HEADER VIRAL PROTEIN 17-SEP-20 7AEJ TITLE CRYSTAL STRUCTURE OF ASYMMETRIC HIV-1 GP41 CONTAINING ALL MEMBRANE TITLE 2 ANCHORS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE GLYCOPROTEIN GP160,ENVELOPE GLYCOPROTEIN GP160; COMPND 3 CHAIN: C, A, B; COMPND 4 SYNONYM: ENV POLYPROTEIN,ENV POLYPROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: GP41 WAS EXPRESSED AS TWO SEPARATE CHAINS, ONE COMPND 7 CONTAINING RESIDUES 512-581 AND ONE CONTAINNG RESIDUES 629-715,GP41 COMPND 8 WAS EXPRESSED AS TWO SEPARATE CHAINS, ONE CONTAINING RESIDUES 512-581 COMPND 9 AND ONE CONTAINNG RESIDUES 629-715,GP41 WAS EXPRESSED AS TWO SEPARATE COMPND 10 CHAINS, ONE CONTAINING RESIDUES 512-581 AND ONE CONTAINNG RESIDUES COMPND 11 629-715,GP41 WAS EXPRESSED AS TWO SEPARATE CHAINS, ONE CONTAINING COMPND 12 RESIDUES 512-581 AND ONE CONTAINNG RESIDUES 629-715; COMPND 13 MOL_ID: 2; COMPND 14 MOLECULE: 2H10; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES; COMPND 17 OTHER_DETAILS: VHH SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; SOURCE 3 ORGANISM_TAXID: 11676; SOURCE 4 GENE: ENV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: LAMA GLAMA; SOURCE 9 ORGANISM_TAXID: 9844; SOURCE 10 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE FUSION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CAILLAT,D.GUILLIGAY,W.WEISSENHORN REVDAT 3 23-OCT-24 7AEJ 1 REMARK REVDAT 2 31-JAN-24 7AEJ 1 REMARK REVDAT 1 26-MAY-21 7AEJ 0 JRNL AUTH C.CAILLAT,D.GUILLIGAY,J.TORRALBA,N.FRIEDRICH,J.L.NIEVA, JRNL AUTH 2 A.TRKOLA,C.J.CHIPOT,F.L.DEHEZ,W.WEISSENHORN JRNL TITL STRUCTURE OF HIV-1 GP41 WITH ITS MEMBRANE ANCHORS TARGETED JRNL TITL 2 BY NEUTRALIZING ANTIBODIES. JRNL REF ELIFE V. 10 2021 JRNL REFN ESSN 2050-084X JRNL PMID 33871352 JRNL DOI 10.7554/ELIFE.65005 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874+SVN REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.3 REMARK 3 NUMBER OF REFLECTIONS : 9184 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.268 REMARK 3 R VALUE (WORKING SET) : 0.265 REMARK 3 FREE R VALUE : 0.308 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.990 REMARK 3 FREE R VALUE TEST SET COUNT : 550 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5600 - 6.0300 0.92 2635 169 0.2560 0.3026 REMARK 3 2 6.0300 - 4.7900 0.85 2311 155 0.2919 0.3041 REMARK 3 3 4.7900 - 4.1800 0.75 2064 117 0.2452 0.2982 REMARK 3 4 4.1800 - 3.8000 0.60 1624 109 0.2869 0.3433 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.517 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.874 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 85.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 91.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 4517 REMARK 3 ANGLE : 0.660 6114 REMARK 3 CHIRALITY : 0.046 694 REMARK 3 PLANARITY : 0.004 765 REMARK 3 DIHEDRAL : 13.514 584 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 518 THROUGH 588 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8891 -8.6532 -55.3547 REMARK 3 T TENSOR REMARK 3 T11: 0.2057 T22: -0.1068 REMARK 3 T33: -0.4312 T12: -0.4108 REMARK 3 T13: -0.8961 T23: -0.5528 REMARK 3 L TENSOR REMARK 3 L11: 1.1284 L22: 3.6390 REMARK 3 L33: 4.2067 L12: -1.5032 REMARK 3 L13: -0.9621 L23: 0.1050 REMARK 3 S TENSOR REMARK 3 S11: 0.2769 S12: 1.1657 S13: -0.2592 REMARK 3 S21: 0.1707 S22: -0.1538 S23: -0.6509 REMARK 3 S31: 0.3161 S32: 1.4072 S33: -1.7990 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 589 THROUGH 670 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.5568 -17.0738 -53.3999 REMARK 3 T TENSOR REMARK 3 T11: 0.3909 T22: 0.8250 REMARK 3 T33: 0.4627 T12: -0.1024 REMARK 3 T13: 0.0670 T23: 0.0636 REMARK 3 L TENSOR REMARK 3 L11: 2.8220 L22: 3.0892 REMARK 3 L33: 1.4382 L12: -0.8134 REMARK 3 L13: -0.7897 L23: 1.5639 REMARK 3 S TENSOR REMARK 3 S11: 0.4094 S12: -0.4810 S13: -0.6952 REMARK 3 S21: -0.1411 S22: -0.3128 S23: -0.0308 REMARK 3 S31: 1.3645 S32: -1.7959 S33: -0.1565 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 671 THROUGH 706 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.4917 -23.3803-100.9305 REMARK 3 T TENSOR REMARK 3 T11: 1.6152 T22: 1.6355 REMARK 3 T33: 1.4077 T12: 0.1154 REMARK 3 T13: -0.2809 T23: -0.0371 REMARK 3 L TENSOR REMARK 3 L11: 0.0841 L22: 0.0408 REMARK 3 L33: 0.1547 L12: -0.0333 REMARK 3 L13: -0.1244 L23: 0.0875 REMARK 3 S TENSOR REMARK 3 S11: -0.0656 S12: 0.0138 S13: -0.7573 REMARK 3 S21: -0.9136 S22: -0.2893 S23: 0.2683 REMARK 3 S31: 0.3173 S32: 0.0972 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 527 THROUGH 588 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.6663 -4.4201 -46.2511 REMARK 3 T TENSOR REMARK 3 T11: 0.6137 T22: 0.5304 REMARK 3 T33: 0.8443 T12: -0.1566 REMARK 3 T13: -0.3438 T23: -0.0646 REMARK 3 L TENSOR REMARK 3 L11: 1.3640 L22: 3.7319 REMARK 3 L33: 2.1143 L12: -1.4661 REMARK 3 L13: -0.1046 L23: 0.7551 REMARK 3 S TENSOR REMARK 3 S11: 0.2566 S12: -1.0797 S13: 0.3967 REMARK 3 S21: 0.9537 S22: 0.1563 S23: 0.0484 REMARK 3 S31: 0.4124 S32: -0.8932 S33: 0.3109 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 589 THROUGH 663 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9780 1.3921 -52.1166 REMARK 3 T TENSOR REMARK 3 T11: 0.6167 T22: 0.5397 REMARK 3 T33: 0.5469 T12: -0.0658 REMARK 3 T13: -0.0775 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 0.5660 L22: 0.8329 REMARK 3 L33: 0.8598 L12: -0.3791 REMARK 3 L13: -0.6291 L23: 0.6678 REMARK 3 S TENSOR REMARK 3 S11: -0.2223 S12: 0.3183 S13: 1.5728 REMARK 3 S21: 0.5664 S22: -0.4893 S23: -0.1123 REMARK 3 S31: 0.1439 S32: 0.3557 S33: -0.0107 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 664 THROUGH 693 ) REMARK 3 ORIGIN FOR THE GROUP (A): -43.8688 -6.7446 -80.7081 REMARK 3 T TENSOR REMARK 3 T11: 1.6919 T22: 0.9925 REMARK 3 T33: 0.4247 T12: -0.2299 REMARK 3 T13: -1.2973 T23: 0.1608 REMARK 3 L TENSOR REMARK 3 L11: 2.8090 L22: 2.9948 REMARK 3 L33: 6.7902 L12: -0.3652 REMARK 3 L13: -0.5430 L23: 2.8987 REMARK 3 S TENSOR REMARK 3 S11: 0.4363 S12: -0.5545 S13: 0.0172 REMARK 3 S21: -0.1816 S22: 1.2624 S23: 0.1765 REMARK 3 S31: 1.1327 S32: -1.2075 S33: 2.8359 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 518 THROUGH 627 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1322 -12.3846 -52.2222 REMARK 3 T TENSOR REMARK 3 T11: 0.4676 T22: 0.8664 REMARK 3 T33: 0.3785 T12: 0.2636 REMARK 3 T13: 0.1655 T23: -0.4083 REMARK 3 L TENSOR REMARK 3 L11: 1.1244 L22: 2.1156 REMARK 3 L33: 0.6986 L12: 0.7306 REMARK 3 L13: -0.0848 L23: -1.2644 REMARK 3 S TENSOR REMARK 3 S11: 0.6500 S12: -0.4392 S13: -0.2816 REMARK 3 S21: -0.0064 S22: 0.0884 S23: 0.3591 REMARK 3 S31: 0.5901 S32: -0.3834 S33: 0.2974 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 628 THROUGH 700 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.9534 -15.6981 -66.0711 REMARK 3 T TENSOR REMARK 3 T11: 0.5211 T22: 1.2191 REMARK 3 T33: 1.0452 T12: 0.0019 REMARK 3 T13: -0.0327 T23: -0.2053 REMARK 3 L TENSOR REMARK 3 L11: 0.5272 L22: 1.9598 REMARK 3 L33: 1.0557 L12: -0.4327 REMARK 3 L13: -0.1287 L23: -1.2130 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: -0.4673 S13: 0.2393 REMARK 3 S21: -0.1897 S22: -0.9157 S23: 0.5599 REMARK 3 S31: 0.5714 S32: -1.7577 S33: -0.0010 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.1659 17.8162 -63.3357 REMARK 3 T TENSOR REMARK 3 T11: 0.5121 T22: 0.4254 REMARK 3 T33: 0.9281 T12: -0.0108 REMARK 3 T13: -0.1675 T23: -0.0499 REMARK 3 L TENSOR REMARK 3 L11: 3.3479 L22: 2.6453 REMARK 3 L33: 1.4750 L12: -1.0738 REMARK 3 L13: -1.6917 L23: -0.3904 REMARK 3 S TENSOR REMARK 3 S11: 0.3037 S12: 0.3623 S13: 0.0879 REMARK 3 S21: -0.3128 S22: -0.0030 S23: 0.0591 REMARK 3 S31: 0.1899 S32: -0.2191 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292110631. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID30B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9763 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS, STARANISO REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11179 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 49.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.23000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 4.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.94 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1ENV, 4B50 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE PH 6.0 0.2M REMARK 280 AMMONIUM SULFATE 20 % PEG 200 0.1 M NACL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 117.20850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 117.20850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.37500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.70700 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.37500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.70700 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 117.20850 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.37500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.70700 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 117.20850 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.37500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.70700 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -141.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 501 REMARK 465 ALA C 502 REMARK 465 MET C 503 REMARK 465 ASP C 504 REMARK 465 TYR C 505 REMARK 465 LYS C 506 REMARK 465 ASP C 507 REMARK 465 ASP C 508 REMARK 465 ASP C 509 REMARK 465 ASP C 510 REMARK 465 LYS C 511 REMARK 465 ALA C 512 REMARK 465 VAL C 513 REMARK 465 GLY C 514 REMARK 465 ILE C 515 REMARK 465 GLY C 516 REMARK 465 ALA C 517 REMARK 465 GLN C 617 REMARK 465 LEU C 618 REMARK 465 LEU C 619 REMARK 465 GLY C 620 REMARK 465 GLY C 621 REMARK 465 ALA C 622 REMARK 465 MET C 623 REMARK 465 ARG C 707 REMARK 465 VAL C 708 REMARK 465 ARG C 709 REMARK 465 GLN C 710 REMARK 465 GLY C 711 REMARK 465 TYR C 712 REMARK 465 SER C 713 REMARK 465 PRO C 714 REMARK 465 LEU C 715 REMARK 465 SER C 716 REMARK 465 ARG C 717 REMARK 465 ARG C 718 REMARK 465 GLY A 501 REMARK 465 ALA A 502 REMARK 465 MET A 503 REMARK 465 ASP A 504 REMARK 465 TYR A 505 REMARK 465 LYS A 506 REMARK 465 ASP A 507 REMARK 465 ASP A 508 REMARK 465 ASP A 509 REMARK 465 ASP A 510 REMARK 465 LYS A 511 REMARK 465 ALA A 512 REMARK 465 VAL A 513 REMARK 465 GLY A 514 REMARK 465 ILE A 515 REMARK 465 GLY A 516 REMARK 465 ALA A 517 REMARK 465 LEU A 518 REMARK 465 LEU A 519 REMARK 465 LEU A 520 REMARK 465 GLY A 521 REMARK 465 PHE A 522 REMARK 465 LEU A 523 REMARK 465 GLY A 524 REMARK 465 ALA A 525 REMARK 465 ALA A 526 REMARK 465 GLN A 616 REMARK 465 GLN A 617 REMARK 465 LEU A 618 REMARK 465 LEU A 619 REMARK 465 GLY A 620 REMARK 465 GLY A 621 REMARK 465 ALA A 622 REMARK 465 MET A 623 REMARK 465 ASP A 624 REMARK 465 ASP A 625 REMARK 465 ASP A 626 REMARK 465 ASP A 627 REMARK 465 GLY A 694 REMARK 465 LEU A 695 REMARK 465 ARG A 696 REMARK 465 ILE A 697 REMARK 465 VAL A 698 REMARK 465 PHE A 699 REMARK 465 ALA A 700 REMARK 465 VAL A 701 REMARK 465 LEU A 702 REMARK 465 SER A 703 REMARK 465 VAL A 704 REMARK 465 VAL A 705 REMARK 465 ASN A 706 REMARK 465 ARG A 707 REMARK 465 VAL A 708 REMARK 465 ARG A 709 REMARK 465 GLN A 710 REMARK 465 GLY A 711 REMARK 465 TYR A 712 REMARK 465 SER A 713 REMARK 465 PRO A 714 REMARK 465 LEU A 715 REMARK 465 SER A 716 REMARK 465 ARG A 717 REMARK 465 ARG A 718 REMARK 465 GLY B 501 REMARK 465 ALA B 502 REMARK 465 MET B 503 REMARK 465 ASP B 504 REMARK 465 TYR B 505 REMARK 465 LYS B 506 REMARK 465 ASP B 507 REMARK 465 ASP B 508 REMARK 465 ASP B 509 REMARK 465 ASP B 510 REMARK 465 LYS B 511 REMARK 465 ALA B 512 REMARK 465 VAL B 513 REMARK 465 GLY B 514 REMARK 465 ILE B 515 REMARK 465 GLY B 516 REMARK 465 ALA B 517 REMARK 465 ASP B 615 REMARK 465 GLN B 616 REMARK 465 GLN B 617 REMARK 465 LEU B 618 REMARK 465 LEU B 619 REMARK 465 GLY B 620 REMARK 465 GLY B 621 REMARK 465 ALA B 622 REMARK 465 MET B 623 REMARK 465 ASP B 624 REMARK 465 ASP B 625 REMARK 465 ASP B 626 REMARK 465 VAL B 701 REMARK 465 LEU B 702 REMARK 465 SER B 703 REMARK 465 VAL B 704 REMARK 465 VAL B 705 REMARK 465 ASN B 706 REMARK 465 ARG B 707 REMARK 465 VAL B 708 REMARK 465 ARG B 709 REMARK 465 GLN B 710 REMARK 465 GLY B 711 REMARK 465 TYR B 712 REMARK 465 SER B 713 REMARK 465 PRO B 714 REMARK 465 LEU B 715 REMARK 465 SER B 716 REMARK 465 ARG B 717 REMARK 465 ARG B 718 REMARK 465 SER D 113 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP C 624 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C 532 163.90 67.50 REMARK 500 ASP C 627 44.43 -85.72 REMARK 500 LYS C 628 -52.24 -130.68 REMARK 500 ASN C 671 -125.94 62.75 REMARK 500 TRP A 666 154.01 66.19 REMARK 500 ALA A 667 -159.14 70.74 REMARK 500 LEU A 669 -130.11 178.77 REMARK 500 ASN A 671 -72.83 -89.09 REMARK 500 PHE A 673 -55.76 -176.78 REMARK 500 SER D 99 -150.46 -129.50 REMARK 500 REMARK 500 REMARK: NULL DBREF 7AEJ C 512 620 UNP B2CPZ5 B2CPZ5_9HIV1 512 594 DBREF 7AEJ C 629 718 UNP B2CPZ5 B2CPZ5_9HIV1 629 718 DBREF 7AEJ A 512 620 UNP B2CPZ5 B2CPZ5_9HIV1 512 594 DBREF 7AEJ A 629 718 UNP B2CPZ5 B2CPZ5_9HIV1 629 718 DBREF 7AEJ B 512 620 UNP B2CPZ5 B2CPZ5_9HIV1 512 594 DBREF 7AEJ B 629 718 UNP B2CPZ5 B2CPZ5_9HIV1 629 718 DBREF 7AEJ D 1 113 PDB 7AEJ 7AEJ 1 113 SEQADV 7AEJ GLY C 501 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ALA C 502 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ MET C 503 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP C 504 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ TYR C 505 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ LYS C 506 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP C 507 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP C 508 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP C 509 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP C 510 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ LYS C 511 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ LEU C 519 UNP B2CPZ5 PHE 519 CONFLICT SEQADV 7AEJ GLY C 621 UNP B2CPZ5 LINKER SEQADV 7AEJ ALA C 622 UNP B2CPZ5 LINKER SEQADV 7AEJ MET C 623 UNP B2CPZ5 LINKER SEQADV 7AEJ ASP C 624 UNP B2CPZ5 LINKER SEQADV 7AEJ ASP C 625 UNP B2CPZ5 LINKER SEQADV 7AEJ ASP C 626 UNP B2CPZ5 LINKER SEQADV 7AEJ ASP C 627 UNP B2CPZ5 LINKER SEQADV 7AEJ LYS C 628 UNP B2CPZ5 LINKER SEQADV 7AEJ ARG C 717 UNP B2CPZ5 PHE 717 ENGINEERED MUTATION SEQADV 7AEJ ARG C 718 UNP B2CPZ5 GLN 718 ENGINEERED MUTATION SEQADV 7AEJ GLY A 501 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ALA A 502 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ MET A 503 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP A 504 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ TYR A 505 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ LYS A 506 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP A 507 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP A 508 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP A 509 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP A 510 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ LYS A 511 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ LEU A 519 UNP B2CPZ5 PHE 519 CONFLICT SEQADV 7AEJ GLY A 621 UNP B2CPZ5 LINKER SEQADV 7AEJ ALA A 622 UNP B2CPZ5 LINKER SEQADV 7AEJ MET A 623 UNP B2CPZ5 LINKER SEQADV 7AEJ ASP A 624 UNP B2CPZ5 LINKER SEQADV 7AEJ ASP A 625 UNP B2CPZ5 LINKER SEQADV 7AEJ ASP A 626 UNP B2CPZ5 LINKER SEQADV 7AEJ ASP A 627 UNP B2CPZ5 LINKER SEQADV 7AEJ LYS A 628 UNP B2CPZ5 LINKER SEQADV 7AEJ ARG A 717 UNP B2CPZ5 PHE 717 ENGINEERED MUTATION SEQADV 7AEJ ARG A 718 UNP B2CPZ5 GLN 718 ENGINEERED MUTATION SEQADV 7AEJ GLY B 501 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ALA B 502 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ MET B 503 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP B 504 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ TYR B 505 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ LYS B 506 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP B 507 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP B 508 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP B 509 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ ASP B 510 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ LYS B 511 UNP B2CPZ5 EXPRESSION TAG SEQADV 7AEJ LEU B 519 UNP B2CPZ5 PHE 519 CONFLICT SEQADV 7AEJ GLY B 621 UNP B2CPZ5 LINKER SEQADV 7AEJ ALA B 622 UNP B2CPZ5 LINKER SEQADV 7AEJ MET B 623 UNP B2CPZ5 LINKER SEQADV 7AEJ ASP B 624 UNP B2CPZ5 LINKER SEQADV 7AEJ ASP B 625 UNP B2CPZ5 LINKER SEQADV 7AEJ ASP B 626 UNP B2CPZ5 LINKER SEQADV 7AEJ ASP B 627 UNP B2CPZ5 LINKER SEQADV 7AEJ LYS B 628 UNP B2CPZ5 LINKER SEQADV 7AEJ ARG B 717 UNP B2CPZ5 PHE 717 ENGINEERED MUTATION SEQADV 7AEJ ARG B 718 UNP B2CPZ5 GLN 718 ENGINEERED MUTATION SEQRES 1 C 192 GLY ALA MET ASP TYR LYS ASP ASP ASP ASP LYS ALA VAL SEQRES 2 C 192 GLY ILE GLY ALA LEU LEU LEU GLY PHE LEU GLY ALA ALA SEQRES 3 C 192 GLY SER THR MET GLY ALA ALA SER MET THR LEU THR VAL SEQRES 4 C 192 GLN ALA ARG GLN LEU LEU SER GLY ILE VAL GLN GLN GLN SEQRES 5 C 192 ASN ASN LEU LEU ARG ALA ILE GLU ALA GLN GLN HIS LEU SEQRES 6 C 192 LEU GLN LEU THR VAL TRP GLY ILE LYS GLN LEU GLN ALA SEQRES 7 C 192 ARG ILE LEU ALA VAL GLU ARG TYR LEU LYS ASP GLN GLN SEQRES 8 C 192 LEU LEU GLY GLY ALA MET ASP ASP ASP ASP LYS MET GLU SEQRES 9 C 192 TRP ASP ARG GLU ILE ASN ASN TYR THR SER LEU ILE HIS SEQRES 10 C 192 SER LEU ILE GLU GLU SER GLN ASN GLN GLN GLU LYS ASN SEQRES 11 C 192 GLU GLN GLU LEU LEU GLU LEU ASP LYS TRP ALA SER LEU SEQRES 12 C 192 TRP ASN TRP PHE ASN ILE THR ASN TRP LEU TRP TYR ILE SEQRES 13 C 192 LYS LEU PHE ILE MET ILE VAL GLY GLY LEU VAL GLY LEU SEQRES 14 C 192 ARG ILE VAL PHE ALA VAL LEU SER VAL VAL ASN ARG VAL SEQRES 15 C 192 ARG GLN GLY TYR SER PRO LEU SER ARG ARG SEQRES 1 A 192 GLY ALA MET ASP TYR LYS ASP ASP ASP ASP LYS ALA VAL SEQRES 2 A 192 GLY ILE GLY ALA LEU LEU LEU GLY PHE LEU GLY ALA ALA SEQRES 3 A 192 GLY SER THR MET GLY ALA ALA SER MET THR LEU THR VAL SEQRES 4 A 192 GLN ALA ARG GLN LEU LEU SER GLY ILE VAL GLN GLN GLN SEQRES 5 A 192 ASN ASN LEU LEU ARG ALA ILE GLU ALA GLN GLN HIS LEU SEQRES 6 A 192 LEU GLN LEU THR VAL TRP GLY ILE LYS GLN LEU GLN ALA SEQRES 7 A 192 ARG ILE LEU ALA VAL GLU ARG TYR LEU LYS ASP GLN GLN SEQRES 8 A 192 LEU LEU GLY GLY ALA MET ASP ASP ASP ASP LYS MET GLU SEQRES 9 A 192 TRP ASP ARG GLU ILE ASN ASN TYR THR SER LEU ILE HIS SEQRES 10 A 192 SER LEU ILE GLU GLU SER GLN ASN GLN GLN GLU LYS ASN SEQRES 11 A 192 GLU GLN GLU LEU LEU GLU LEU ASP LYS TRP ALA SER LEU SEQRES 12 A 192 TRP ASN TRP PHE ASN ILE THR ASN TRP LEU TRP TYR ILE SEQRES 13 A 192 LYS LEU PHE ILE MET ILE VAL GLY GLY LEU VAL GLY LEU SEQRES 14 A 192 ARG ILE VAL PHE ALA VAL LEU SER VAL VAL ASN ARG VAL SEQRES 15 A 192 ARG GLN GLY TYR SER PRO LEU SER ARG ARG SEQRES 1 B 192 GLY ALA MET ASP TYR LYS ASP ASP ASP ASP LYS ALA VAL SEQRES 2 B 192 GLY ILE GLY ALA LEU LEU LEU GLY PHE LEU GLY ALA ALA SEQRES 3 B 192 GLY SER THR MET GLY ALA ALA SER MET THR LEU THR VAL SEQRES 4 B 192 GLN ALA ARG GLN LEU LEU SER GLY ILE VAL GLN GLN GLN SEQRES 5 B 192 ASN ASN LEU LEU ARG ALA ILE GLU ALA GLN GLN HIS LEU SEQRES 6 B 192 LEU GLN LEU THR VAL TRP GLY ILE LYS GLN LEU GLN ALA SEQRES 7 B 192 ARG ILE LEU ALA VAL GLU ARG TYR LEU LYS ASP GLN GLN SEQRES 8 B 192 LEU LEU GLY GLY ALA MET ASP ASP ASP ASP LYS MET GLU SEQRES 9 B 192 TRP ASP ARG GLU ILE ASN ASN TYR THR SER LEU ILE HIS SEQRES 10 B 192 SER LEU ILE GLU GLU SER GLN ASN GLN GLN GLU LYS ASN SEQRES 11 B 192 GLU GLN GLU LEU LEU GLU LEU ASP LYS TRP ALA SER LEU SEQRES 12 B 192 TRP ASN TRP PHE ASN ILE THR ASN TRP LEU TRP TYR ILE SEQRES 13 B 192 LYS LEU PHE ILE MET ILE VAL GLY GLY LEU VAL GLY LEU SEQRES 14 B 192 ARG ILE VAL PHE ALA VAL LEU SER VAL VAL ASN ARG VAL SEQRES 15 B 192 ARG GLN GLY TYR SER PRO LEU SER ARG ARG SEQRES 1 D 122 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 D 122 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 D 122 SER ILE SER SER VAL ASP VAL MET SER TRP TYR ARG GLN SEQRES 4 D 122 ALA PRO GLY LYS GLN ARG GLU LEU VAL ALA PHE ILE THR SEQRES 5 D 122 ASP ARG GLY ARG THR ASN TYR LYS VAL SER VAL LYS GLY SEQRES 6 D 122 ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN MET VAL SEQRES 7 D 122 TYR LEU GLN MET ASN SER LEU LYS PRO GLU ASP THR ALA SEQRES 8 D 122 ASP TYR LEU CYS ARG ALA GLU SER ARG THR SER TRP SER SEQRES 9 D 122 SER PRO SER PRO LEU ASP VAL TRP GLY ARG GLY THR GLN SEQRES 10 D 122 VAL THR VAL SER SER HELIX 1 AA1 LEU C 518 MET C 530 1 13 HELIX 2 AA2 GLY C 531 ASP C 589 1 59 HELIX 3 AA3 LYS C 628 ASN C 671 1 44 HELIX 4 AA4 PHE C 673 ASN C 706 1 34 HELIX 5 AA5 ALA A 533 ASP A 589 1 57 HELIX 6 AA6 GLU A 630 GLU A 662 1 33 HELIX 7 AA7 PHE A 673 VAL A 693 1 21 HELIX 8 AA8 LEU B 519 MET B 530 1 12 HELIX 9 AA9 MET B 530 LYS B 588 1 59 HELIX 10 AB1 LYS B 628 ALA B 700 1 73 HELIX 11 AB2 VAL D 61 LYS D 64 5 4 HELIX 12 AB3 LYS D 83 THR D 87 5 5 SHEET 1 AA1 4 LEU D 4 SER D 7 0 SHEET 2 AA1 4 LEU D 18 ALA D 24 -1 O ALA D 23 N VAL D 5 SHEET 3 AA1 4 MET D 77 MET D 82 -1 O VAL D 78 N CYS D 22 SHEET 4 AA1 4 PHE D 67 ASP D 72 -1 N THR D 68 O GLN D 81 SHEET 1 AA2 6 GLY D 10 VAL D 12 0 SHEET 2 AA2 6 THR D 107 VAL D 111 1 O THR D 110 N GLY D 10 SHEET 3 AA2 6 ALA D 88 SER D 96 -1 N TYR D 90 O THR D 107 SHEET 4 AA2 6 VAL D 33 GLN D 39 -1 N VAL D 33 O GLU D 95 SHEET 5 AA2 6 ARG D 45 THR D 52 -1 O GLU D 46 N ARG D 38 SHEET 6 AA2 6 ASN D 58 TYR D 59 -1 O ASN D 58 N PHE D 50 SHEET 1 AA3 4 GLY D 10 VAL D 12 0 SHEET 2 AA3 4 THR D 107 VAL D 111 1 O THR D 110 N GLY D 10 SHEET 3 AA3 4 ALA D 88 SER D 96 -1 N TYR D 90 O THR D 107 SHEET 4 AA3 4 LEU D 100F TRP D 103 -1 O VAL D 102 N ALA D 94 SSBOND 1 CYS D 22 CYS D 92 1555 1555 2.03 CRYST1 96.750 101.414 234.417 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010336 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004266 0.00000