HEADER DNA BINDING PROTEIN 17-SEP-20 7AEO TITLE HUMAN ARTD2 IN COMPLEX WITH DNA OLIGONUCLEOTIDES COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY [ADP-RIBOSE] POLYMERASE 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HPARP-2,ADP-RIBOSYLTRANSFERASE DIPHTHERIA TOXIN-LIKE 2, COMPND 5 ARTD2,DNA ADP-RIBOSYLTRANSFERASE PARP2,NAD(+) ADP-RIBOSYLTRANSFERASE COMPND 6 2,ADPRT-2,POLY[ADP-RIBOSE] SYNTHASE 2,PADPRT-2,PROTEIN POLY-ADP- COMPND 7 RIBOSYLTRANSFERASE PARP2; COMPND 8 EC: 2.4.2.30,2.4.2.-; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: DNA; COMPND 12 CHAIN: B; COMPND 13 ENGINEERED: YES; COMPND 14 MOL_ID: 3; COMPND 15 MOLECULE: DNA; COMPND 16 CHAIN: C; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARP2, ADPRT2, ADPRTL2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 15 ORGANISM_TAXID: 32630 KEYWDS ARTD2, PARP2, DNA-DAMAGE, DNA-REPAIR, ADP-RIBOSYLATION, DNA-BINDING KEYWDS 2 PROTEIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.OBAJI,M.M.MAKSIMAINEN,A.GALERA-PRAT,L.LEHTIO REVDAT 4 31-JAN-24 7AEO 1 JRNL REVDAT 3 23-JUN-21 7AEO 1 JRNL REVDAT 2 26-MAY-21 7AEO 1 COMPND SOURCE JRNL REVDAT 1 19-MAY-21 7AEO 0 JRNL AUTH E.OBAJI,M.M.MAKSIMAINEN,A.GALERA-PRAT,L.LEHTIO JRNL TITL ACTIVATION OF PARP2/ARTD2 BY DNA DAMAGE INDUCES JRNL TITL 2 CONFORMATIONAL CHANGES RELIEVING ENZYME AUTOINHIBITION. JRNL REF NAT COMMUN V. 12 3479 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34108479 JRNL DOI 10.1038/S41467-021-23800-X REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.OBAJI,M.M.MAKSIMAINEN,A.GALERA-PRAT,L.LEHTIO REMARK 1 TITL ACTIVATION OF ARTD2/PARP2 BY DNA DAMAGE INDUCES REMARK 1 TITL 2 CONFORMATIONAL CHANGES RELIEVING ENZYME AUTOINHIBITION REMARK 1 REF BIORXIV 2020 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2020.11.24.395475 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 24978 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.271 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 1175 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.8400 - 5.5900 0.97 3069 147 0.1975 0.2783 REMARK 3 2 5.5800 - 4.4400 0.99 3002 154 0.2094 0.2420 REMARK 3 3 4.4400 - 3.8800 1.00 2975 153 0.2258 0.2520 REMARK 3 4 3.8800 - 3.5300 0.99 2964 158 0.2585 0.2691 REMARK 3 5 3.5300 - 3.2700 0.99 2934 140 0.2475 0.2338 REMARK 3 6 3.2700 - 3.0800 0.99 2958 142 0.2474 0.3035 REMARK 3 7 3.0800 - 2.9300 1.00 2951 146 0.3579 0.3693 REMARK 3 8 2.9300 - 2.8000 1.00 2950 135 0.4201 0.5239 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.586 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.906 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 98.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 142.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4425 REMARK 3 ANGLE : 0.739 6118 REMARK 3 CHIRALITY : 0.043 663 REMARK 3 PLANARITY : 0.004 678 REMARK 3 DIHEDRAL : 21.114 1682 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 91 THROUGH 365 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.4426 -27.6600 51.3561 REMARK 3 T TENSOR REMARK 3 T11: 0.9846 T22: 1.2738 REMARK 3 T33: 0.9308 T12: 0.1537 REMARK 3 T13: -0.1733 T23: 0.0727 REMARK 3 L TENSOR REMARK 3 L11: 5.2437 L22: 1.9667 REMARK 3 L33: 2.8989 L12: -0.7133 REMARK 3 L13: -3.8405 L23: 2.0764 REMARK 3 S TENSOR REMARK 3 S11: -0.2784 S12: 0.6075 S13: -0.4882 REMARK 3 S21: -0.6910 S22: -0.0121 S23: 0.5021 REMARK 3 S31: -0.3489 S32: -0.2763 S33: 0.2861 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 366 THROUGH 583 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8278 -25.8532 31.3169 REMARK 3 T TENSOR REMARK 3 T11: 1.0887 T22: 0.8065 REMARK 3 T33: 0.7244 T12: 0.1064 REMARK 3 T13: 0.1519 T23: -0.2548 REMARK 3 L TENSOR REMARK 3 L11: 4.8298 L22: 4.2186 REMARK 3 L33: 6.0821 L12: 1.1625 REMARK 3 L13: -0.0165 L23: -2.1994 REMARK 3 S TENSOR REMARK 3 S11: -0.4257 S12: 0.3911 S13: -0.1295 REMARK 3 S21: -0.1632 S22: -0.1350 S23: 0.4926 REMARK 3 S31: -0.4768 S32: -0.6006 S33: 0.5448 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 5 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.8542 19.3771 47.8960 REMARK 3 T TENSOR REMARK 3 T11: 2.0172 T22: 1.1028 REMARK 3 T33: 1.0522 T12: 0.3519 REMARK 3 T13: -0.3273 T23: 0.2456 REMARK 3 L TENSOR REMARK 3 L11: 4.7620 L22: 4.9796 REMARK 3 L33: 5.1159 L12: -0.6218 REMARK 3 L13: 1.6554 L23: -4.9066 REMARK 3 S TENSOR REMARK 3 S11: 0.1666 S12: -0.8845 S13: -0.7820 REMARK 3 S21: 1.9913 S22: -0.8608 S23: -0.5742 REMARK 3 S31: -0.0712 S32: 1.4094 S33: 0.6647 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 6 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.0502 -0.6154 63.2598 REMARK 3 T TENSOR REMARK 3 T11: 1.9010 T22: 1.3502 REMARK 3 T33: 1.6833 T12: 0.4203 REMARK 3 T13: -0.1558 T23: 0.5921 REMARK 3 L TENSOR REMARK 3 L11: 6.2129 L22: 5.4982 REMARK 3 L33: 4.1281 L12: -5.7972 REMARK 3 L13: 5.0402 L23: -4.7548 REMARK 3 S TENSOR REMARK 3 S11: 1.7570 S12: 1.0872 S13: 0.0726 REMARK 3 S21: -0.8322 S22: -0.2853 S23: 1.5209 REMARK 3 S31: -0.7246 S32: -0.6920 S33: -0.8888 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 1 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.3442 -1.7280 64.2256 REMARK 3 T TENSOR REMARK 3 T11: 1.7532 T22: 1.3556 REMARK 3 T33: 1.3829 T12: 0.4570 REMARK 3 T13: -0.2287 T23: 0.3442 REMARK 3 L TENSOR REMARK 3 L11: 2.9960 L22: 5.8694 REMARK 3 L33: 3.2218 L12: -3.7720 REMARK 3 L13: 1.8442 L23: -3.4053 REMARK 3 S TENSOR REMARK 3 S11: 0.1834 S12: 0.9297 S13: 0.4930 REMARK 3 S21: 0.6406 S22: 0.3278 S23: 0.2018 REMARK 3 S31: -2.0780 S32: 0.5759 S33: -0.3233 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.7765 14.1163 48.0682 REMARK 3 T TENSOR REMARK 3 T11: 1.5883 T22: 1.3128 REMARK 3 T33: 1.4645 T12: 0.3649 REMARK 3 T13: 0.0346 T23: 0.4983 REMARK 3 L TENSOR REMARK 3 L11: 4.6838 L22: 4.5201 REMARK 3 L33: 6.0317 L12: -4.5712 REMARK 3 L13: 1.7134 L23: -0.8805 REMARK 3 S TENSOR REMARK 3 S11: 0.4047 S12: 1.1689 S13: -0.0594 REMARK 3 S21: 0.2079 S22: -1.2010 S23: -0.6352 REMARK 3 S31: 0.1966 S32: 0.8759 S33: 0.6385 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AEO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292111234. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9687 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24990 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 1.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.590 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MRBUMP REMARK 200 STARTING MODEL: F6IK AND 5DSY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SAMPLE WAS CRYSTALLIZED IN 0.1 M MES REMARK 280 PH 6.5 AND 1 M AMMONIUM SULFATE. CRYO SOLUTION WAS A MIXTURE OF REMARK 280 10% (V/V) GLYCEROL, 10% (V/V) DIETHYLENE GLYCOL, AND 10% (V/V) 2- REMARK 280 PROPANOL WITH THE CRYSTALLIZATION CONDITIONS, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 83.41500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 83.41500 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.92000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 83.41500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 35.96000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 83.41500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.88000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 83.41500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 107.88000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 83.41500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.96000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 83.41500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 83.41500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.92000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 83.41500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 83.41500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 71.92000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 83.41500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 107.88000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 83.41500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 35.96000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 83.41500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 35.96000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 83.41500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 107.88000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 83.41500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 83.41500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 71.92000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 143.84000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 88 REMARK 465 MET A 89 REMARK 465 GLY A 90 REMARK 465 THR A 210 REMARK 465 ASN A 211 REMARK 465 THR A 212 REMARK 465 GLN A 213 REMARK 465 ASP A 214 REMARK 465 GLU A 215 REMARK 465 GLU A 216 REMARK 465 GLU A 217 REMARK 465 THR A 218 REMARK 465 LYS A 219 REMARK 465 LYS A 220 REMARK 465 GLU A 221 REMARK 465 GLU A 222 REMARK 465 SER A 223 REMARK 465 LEU A 224 REMARK 465 LYS A 225 REMARK 465 SER A 226 REMARK 465 PRO A 227 REMARK 465 LEU A 228 REMARK 465 LYS A 229 REMARK 465 PRO A 230 REMARK 465 ASP A 339 REMARK 465 ILE A 340 REMARK 465 GLU A 341 REMARK 465 ILE A 342 REMARK 465 ALA A 343 REMARK 465 ILE A 344 REMARK 465 LYS A 345 REMARK 465 LEU A 346 REMARK 465 VAL A 347 REMARK 465 LYS A 348 REMARK 465 THR A 349 REMARK 465 GLU A 350 REMARK 465 LEU A 351 REMARK 465 GLN A 352 REMARK 465 SER A 353 REMARK 465 PRO A 354 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 143 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 231 CG CD OE1 OE2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 LYS A 276 CG CD CE NZ REMARK 470 ILE A 285 CG1 CG2 CD1 REMARK 470 GLN A 293 CG CD OE1 NE2 REMARK 470 HIS A 294 CG ND1 CD2 CE1 NE2 REMARK 470 GLN A 324 CG CD OE1 NE2 REMARK 470 GLU A 355 CG CD OE1 OE2 REMARK 470 LYS A 413 CG CD CE NZ REMARK 470 LYS A 459 CG CD CE NZ REMARK 470 LYS A 504 CG CD CE NZ REMARK 470 GLN A 510 CG CD OE1 NE2 REMARK 470 LEU A 580 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG C 1 P DG C 1 OP3 -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DA C 16 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 120 138.10 -170.92 REMARK 500 ASN A 129 70.06 -154.57 REMARK 500 SER A 166 -139.89 59.80 REMARK 500 ASP A 190 41.46 -103.89 REMARK 500 ARG A 296 -3.54 72.14 REMARK 500 HIS A 394 55.29 -97.04 REMARK 500 LEU A 401 96.11 -69.33 REMARK 500 REMARK 500 REMARK: NULL DBREF 7AEO A 90 583 UNP Q9UGN5 PARP2_HUMAN 90 583 DBREF 7AEO B 1 16 PDB 7AEO 7AEO 1 16 DBREF 7AEO C 1 16 PDB 7AEO 7AEO 1 16 SEQADV 7AEO SER A 88 UNP Q9UGN5 EXPRESSION TAG SEQADV 7AEO MET A 89 UNP Q9UGN5 EXPRESSION TAG SEQRES 1 A 496 SER MET GLY LYS ALA PRO VAL ASP PRO GLU CYS THR ALA SEQRES 2 A 496 LYS VAL GLY LYS ALA HIS VAL TYR CYS GLU GLY ASN ASP SEQRES 3 A 496 VAL TYR ASP VAL MET LEU ASN GLN THR ASN LEU GLN PHE SEQRES 4 A 496 ASN ASN ASN LYS TYR TYR LEU ILE GLN LEU LEU GLU ASP SEQRES 5 A 496 ASP ALA GLN ARG ASN PHE SER VAL TRP MET ARG TRP GLY SEQRES 6 A 496 ARG VAL GLY LYS MET GLY GLN HIS SER LEU VAL ALA CYS SEQRES 7 A 496 SER GLY ASN LEU ASN LYS ALA LYS GLU ILE PHE GLN LYS SEQRES 8 A 496 LYS PHE LEU ASP LYS THR LYS ASN ASN TRP GLU ASP ARG SEQRES 9 A 496 GLU LYS PHE GLU LYS VAL PRO GLY LYS TYR ASP MET LEU SEQRES 10 A 496 GLN MET ASP TYR ALA THR ASN THR GLN ASP GLU GLU GLU SEQRES 11 A 496 THR LYS LYS GLU GLU SER LEU LYS SER PRO LEU LYS PRO SEQRES 12 A 496 GLU SER GLN LEU ASP LEU ARG VAL GLN GLU LEU ILE LYS SEQRES 13 A 496 LEU ILE CYS ASN VAL GLN ALA MET GLU GLU MET MET MET SEQRES 14 A 496 GLU MET LYS TYR ASN THR LYS LYS ALA PRO LEU GLY LYS SEQRES 15 A 496 LEU THR VAL ALA GLN ILE LYS ALA GLY TYR GLN SER LEU SEQRES 16 A 496 LYS LYS ILE GLU ASP CYS ILE ARG ALA GLY GLN HIS GLY SEQRES 17 A 496 ARG ALA LEU MET GLU ALA CYS ASN GLU PHE TYR THR ARG SEQRES 18 A 496 ILE PRO HIS ASP PHE GLY LEU ARG THR PRO PRO LEU ILE SEQRES 19 A 496 ARG THR GLN LYS GLU LEU SER GLU LYS ILE GLN LEU LEU SEQRES 20 A 496 GLU ALA LEU GLY ASP ILE GLU ILE ALA ILE LYS LEU VAL SEQRES 21 A 496 LYS THR GLU LEU GLN SER PRO GLU HIS PRO LEU ASP GLN SEQRES 22 A 496 HIS TYR ARG ASN LEU HIS CYS ALA LEU ARG PRO LEU ASP SEQRES 23 A 496 HIS GLU SER TYR GLU PHE LYS VAL ILE SER GLN TYR LEU SEQRES 24 A 496 GLN SER THR HIS ALA PRO THR HIS SER ASP TYR THR MET SEQRES 25 A 496 THR LEU LEU ASP LEU PHE GLU VAL GLU LYS ASP GLY GLU SEQRES 26 A 496 LYS GLU ALA PHE ARG GLU ASP LEU HIS ASN ARG MET LEU SEQRES 27 A 496 LEU TRP HIS GLY SER ARG MET SER ASN TRP VAL GLY ILE SEQRES 28 A 496 LEU SER HIS GLY LEU ARG ILE ALA PRO PRO GLU ALA PRO SEQRES 29 A 496 ILE THR GLY TYR MET PHE GLY LYS GLY ILE TYR PHE ALA SEQRES 30 A 496 ASP MET SER SER LYS SER ALA ASN TYR CYS PHE ALA SER SEQRES 31 A 496 ARG LEU LYS ASN THR GLY LEU LEU LEU LEU SER GLU VAL SEQRES 32 A 496 ALA LEU GLY GLN CYS ASN GLU LEU LEU GLU ALA ASN PRO SEQRES 33 A 496 LYS ALA GLU GLY LEU LEU GLN GLY LYS HIS SER THR LYS SEQRES 34 A 496 GLY LEU GLY LYS MET ALA PRO SER SER ALA HIS PHE VAL SEQRES 35 A 496 THR LEU ASN GLY SER THR VAL PRO LEU GLY PRO ALA SER SEQRES 36 A 496 ASP THR GLY ILE LEU ASN PRO ASP GLY TYR THR LEU ASN SEQRES 37 A 496 TYR ASN GLU TYR ILE VAL TYR ASN PRO ASN GLN VAL ARG SEQRES 38 A 496 MET ARG TYR LEU LEU LYS VAL GLN PHE ASN PHE LEU GLN SEQRES 39 A 496 LEU TRP SEQRES 1 B 16 DT DG DT DG DC DT DC DC DG DG DG DT DC SEQRES 2 B 16 DG DT DC SEQRES 1 C 16 DG DA DC DG DA DC DC DC DG DG DA DG DC SEQRES 2 C 16 DA DC DA HET SO4 A 601 5 HET SO4 A 602 5 HETNAM SO4 SULFATE ION FORMUL 4 SO4 2(O4 S 2-) HELIX 1 AA1 LEU A 124 ASN A 127 5 4 HELIX 2 AA2 ASN A 168 LYS A 185 1 18 HELIX 3 AA3 ASP A 235 CYS A 246 1 12 HELIX 4 AA4 ASN A 247 TYR A 260 1 14 HELIX 5 AA5 ASN A 261 ALA A 265 5 5 HELIX 6 AA6 THR A 271 ALA A 291 1 21 HELIX 7 AA7 ARG A 296 ILE A 309 1 14 HELIX 8 AA8 THR A 323 ALA A 336 1 14 HELIX 9 AA9 HIS A 356 HIS A 366 1 11 HELIX 10 AB1 SER A 376 THR A 389 1 14 HELIX 11 AB2 GLY A 411 PHE A 416 1 6 HELIX 12 AB3 ARG A 431 SER A 433 5 3 HELIX 13 AB4 ASN A 434 GLY A 442 1 9 HELIX 14 AB5 MET A 466 ASN A 472 1 7 HELIX 15 AB6 TYR A 473 PHE A 475 5 3 HELIX 16 AB7 LYS A 504 GLN A 510 5 7 HELIX 17 AB8 SER A 525 PHE A 528 5 4 HELIX 18 AB9 ASN A 563 ASN A 565 5 3 SHEET 1 AA1 4 ALA A 105 VAL A 107 0 SHEET 2 AA1 4 ASN A 128 ASP A 139 -1 O GLU A 138 N HIS A 106 SHEET 3 AA1 4 PHE A 145 ARG A 153 -1 O SER A 146 N LEU A 137 SHEET 4 AA1 4 GLN A 159 SER A 166 -1 O GLN A 159 N TRP A 151 SHEET 1 AA2 4 ALA A 105 VAL A 107 0 SHEET 2 AA2 4 ASN A 128 ASP A 139 -1 O GLU A 138 N HIS A 106 SHEET 3 AA2 4 ASP A 116 ASN A 123 -1 N LEU A 119 O TYR A 132 SHEET 4 AA2 4 ASP A 202 LEU A 204 -1 O ASP A 202 N ASN A 120 SHEET 1 AA3 2 CYS A 109 GLU A 110 0 SHEET 2 AA3 2 ASP A 113 VAL A 114 -1 O ASP A 113 N GLU A 110 SHEET 1 AA4 2 CYS A 367 ALA A 368 0 SHEET 2 AA4 2 GLU A 408 LYS A 409 -1 O GLU A 408 N ALA A 368 SHEET 1 AA5 4 TYR A 397 GLU A 406 0 SHEET 2 AA5 4 VAL A 567 PHE A 579 -1 O LEU A 572 N PHE A 405 SHEET 3 AA5 4 LEU A 484 ALA A 491 -1 N GLU A 489 O ARG A 568 SHEET 4 AA5 4 ARG A 423 GLY A 429 -1 N MET A 424 O VAL A 490 SHEET 1 AA6 4 ILE A 461 PHE A 463 0 SHEET 2 AA6 4 GLU A 558 VAL A 561 -1 O TYR A 559 N PHE A 463 SHEET 3 AA6 4 SER A 514 GLY A 517 -1 N THR A 515 O ILE A 560 SHEET 4 AA6 4 CYS A 495 LEU A 498 1 N ASN A 496 O LYS A 516 SHEET 1 AA7 3 ALA A 541 ASP A 543 0 SHEET 2 AA7 3 GLY A 519 PRO A 523 -1 N ALA A 522 O SER A 542 SHEET 3 AA7 3 LEU A 554 TYR A 556 1 O LEU A 554 N LYS A 520 SHEET 1 AA8 2 VAL A 529 LEU A 531 0 SHEET 2 AA8 2 SER A 534 VAL A 536 -1 O VAL A 536 N VAL A 529 CISPEP 1 GLY A 539 PRO A 540 0 -0.71 CRYST1 166.830 166.830 143.840 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005994 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006952 0.00000