HEADER TRANSFERASE 21-SEP-20 7AG6 TITLE CRYSTAL STRUCTURE OF SF KINASE YIHV FROM E. COLI IN COMPLEX WITH TITLE 2 SULFOFRUCTOSE (SF), ADP-MG COMPND MOL_ID: 1; COMPND 2 MOLECULE: SULFOFRUCTOSE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SF KINASE; COMPND 5 EC: 2.7.1.184; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI (STRAIN K12); SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YIHV, B3883, JW5568; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS SULFOFRUCTOSE, SF KINASE, CARBOHYDRATE KINASE, SULFOGLYCOLYSIS, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.SHARMA,G.J.DAVIES REVDAT 2 31-JAN-24 7AG6 1 REMARK REVDAT 1 14-APR-21 7AG6 0 JRNL AUTH M.SHARMA,P.ABAYAKOON,R.EPA,Y.JIN,J.P.LINGFORD,T.SHIMADA, JRNL AUTH 2 M.NAKANO,J.W.MUI,A.ISHIHAMA,E.D.GODDARD-BORGER,G.J.DAVIES, JRNL AUTH 3 S.J.WILLIAMS JRNL TITL MOLECULAR BASIS OF SULFOSUGAR SELECTIVITY IN JRNL TITL 2 SULFOGLYCOLYSIS. JRNL REF ACS CENT.SCI. V. 7 476 2021 JRNL REFN ESSN 2374-7951 JRNL PMID 33791429 JRNL DOI 10.1021/ACSCENTSCI.0C01285 REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0266 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.17 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 50337 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2671 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.08 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3647 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE SET COUNT : 209 REMARK 3 BIN FREE R VALUE : 0.3640 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4375 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 153 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.57000 REMARK 3 B22 (A**2) : 1.57000 REMARK 3 B33 (A**2) : -5.10000 REMARK 3 B12 (A**2) : 0.79000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.162 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.144 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.997 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4546 ; 0.009 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4128 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6219 ; 1.487 ; 1.637 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9455 ; 1.389 ; 1.576 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 598 ; 6.506 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;33.434 ;22.562 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 634 ;13.527 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;22.790 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 621 ; 0.069 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5279 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1011 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 1 297 B 1 297 8993 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7AG6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292111265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUL-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.1 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53073 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 46.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.70 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.13 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 12.30 REMARK 200 R MERGE FOR SHELL (I) : 1.96300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1RKD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500 W/V, 0.1 M MIB (MALONIC REMARK 280 ACID, IMIDAZOLE, BORIC ACID) BUFFER PH 5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 111.62000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 55.81000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.81000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 111.62000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -53.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 530 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 577 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 LEU B 299 REMARK 465 GLU B 300 REMARK 465 HIS B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 THR A 23 OG1 CG2 REMARK 470 GLU A 24 CG CD OE1 OE2 REMARK 470 GLN A 54 CD OE1 NE2 REMARK 470 ARG A 86 NE CZ NH1 NH2 REMARK 470 LYS A 91 CD CE NZ REMARK 470 LYS A 102 CE NZ REMARK 470 GLU A 123 CD OE1 OE2 REMARK 470 LYS A 144 NZ REMARK 470 ARG A 187 NE CZ NH1 NH2 REMARK 470 LYS A 192 CG CD CE NZ REMARK 470 MET A 194 CG SD CE REMARK 470 LYS A 199 CE NZ REMARK 470 GLN A 200 CG CD OE1 NE2 REMARK 470 ARG A 226 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 233 CG CD CE NZ REMARK 470 ARG A 277 NE CZ NH1 NH2 REMARK 470 LEU A 296 CG CD1 CD2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 HIS A 302 CG ND1 CD2 CE1 NE2 REMARK 470 ARG B 3 NE CZ NH1 NH2 REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 GLN B 54 CG CD OE1 NE2 REMARK 470 ARG B 86 NH1 NH2 REMARK 470 LYS B 91 CE NZ REMARK 470 LYS B 102 CD CE NZ REMARK 470 GLU B 124 OE1 OE2 REMARK 470 GLN B 152 CG CD OE1 NE2 REMARK 470 LYS B 192 CG CD CE NZ REMARK 470 GLU B 193 CG CD OE1 OE2 REMARK 470 LYS B 199 CD CE NZ REMARK 470 LYS B 233 CG CD CE NZ REMARK 470 GLU B 262 CD OE1 OE2 REMARK 470 ARG B 277 NE CZ NH1 NH2 REMARK 470 ASP B 288 CG OD1 OD2 REMARK 470 ARG B 291 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 281 -39.92 -131.22 REMARK 500 ARG B 281 -42.94 -131.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 401 O1A REMARK 620 2 HOH A 502 O 94.9 REMARK 620 3 HOH A 503 O 100.2 94.5 REMARK 620 4 HOH A 538 O 166.9 88.5 92.1 REMARK 620 5 HOH A 553 O 85.3 81.3 173.4 82.7 REMARK 620 6 HOH A 559 O 98.0 154.4 104.8 74.3 77.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP B 401 O2A REMARK 620 2 HOH B 503 O 94.0 REMARK 620 3 HOH B 513 O 92.7 82.7 REMARK 620 4 HOH B 520 O 86.7 86.1 168.7 REMARK 620 5 HOH B 525 O 97.3 168.5 94.8 96.4 REMARK 620 6 HOH B 526 O 172.2 79.4 82.4 96.8 89.2 REMARK 620 N 1 2 3 4 5 DBREF 7AG6 A 1 298 UNP P32143 SQUV_ECOLI 1 298 DBREF 7AG6 B 1 298 UNP P32143 SQUV_ECOLI 1 298 SEQADV 7AG6 LEU A 299 UNP P32143 EXPRESSION TAG SEQADV 7AG6 GLU A 300 UNP P32143 EXPRESSION TAG SEQADV 7AG6 HIS A 301 UNP P32143 EXPRESSION TAG SEQADV 7AG6 HIS A 302 UNP P32143 EXPRESSION TAG SEQADV 7AG6 HIS A 303 UNP P32143 EXPRESSION TAG SEQADV 7AG6 HIS A 304 UNP P32143 EXPRESSION TAG SEQADV 7AG6 HIS A 305 UNP P32143 EXPRESSION TAG SEQADV 7AG6 HIS A 306 UNP P32143 EXPRESSION TAG SEQADV 7AG6 LEU B 299 UNP P32143 EXPRESSION TAG SEQADV 7AG6 GLU B 300 UNP P32143 EXPRESSION TAG SEQADV 7AG6 HIS B 301 UNP P32143 EXPRESSION TAG SEQADV 7AG6 HIS B 302 UNP P32143 EXPRESSION TAG SEQADV 7AG6 HIS B 303 UNP P32143 EXPRESSION TAG SEQADV 7AG6 HIS B 304 UNP P32143 EXPRESSION TAG SEQADV 7AG6 HIS B 305 UNP P32143 EXPRESSION TAG SEQADV 7AG6 HIS B 306 UNP P32143 EXPRESSION TAG SEQRES 1 A 306 MET ILE ARG VAL ALA CYS VAL GLY ILE THR VAL MET ASP SEQRES 2 A 306 ARG ILE TYR TYR VAL GLU GLY LEU PRO THR GLU SER GLY SEQRES 3 A 306 LYS TYR VAL ALA ARG ASN TYR THR GLU VAL GLY GLY GLY SEQRES 4 A 306 PRO ALA ALA THR ALA ALA VAL ALA ALA ALA ARG LEU GLY SEQRES 5 A 306 ALA GLN VAL ASP PHE ILE GLY ARG VAL GLY ASP ASP ASP SEQRES 6 A 306 THR GLY ASN SER LEU LEU ALA GLU LEU GLU SER TRP GLY SEQRES 7 A 306 VAL ASN THR ARG TYR THR LYS ARG TYR ASN GLN ALA LYS SEQRES 8 A 306 SER SER GLN SER ALA ILE MET VAL ASP THR LYS GLY GLU SEQRES 9 A 306 ARG ILE ILE ILE ASN TYR PRO SER PRO ASP LEU LEU PRO SEQRES 10 A 306 ASP ALA GLU TRP LEU GLU GLU ILE ASP PHE SER GLN TRP SEQRES 11 A 306 ASP VAL VAL LEU ALA ASP VAL ARG TRP HIS ASP GLY ALA SEQRES 12 A 306 LYS LYS ALA PHE THR LEU ALA ARG GLN ALA GLY VAL MET SEQRES 13 A 306 THR VAL LEU ASP GLY ASP ILE THR PRO GLN ASP ILE SER SEQRES 14 A 306 GLU LEU VAL ALA LEU SER ASP HIS ALA ALA PHE SER GLU SEQRES 15 A 306 PRO GLY LEU ALA ARG LEU THR GLY VAL LYS GLU MET ALA SEQRES 16 A 306 SER ALA LEU LYS GLN ALA GLN THR LEU THR ASN GLY HIS SEQRES 17 A 306 VAL TYR VAL THR GLN GLY SER ALA GLY CYS ASP TRP LEU SEQRES 18 A 306 GLU ASN GLY GLY ARG GLN HIS GLN PRO ALA PHE LYS VAL SEQRES 19 A 306 ASP VAL VAL ASP THR THR GLY ALA GLY ASP VAL PHE HIS SEQRES 20 A 306 GLY ALA LEU ALA VAL ALA LEU ALA THR SER GLY ASP LEU SEQRES 21 A 306 ALA GLU SER VAL ARG PHE ALA SER GLY VAL ALA ALA LEU SEQRES 22 A 306 LYS CYS THR ARG PRO GLY GLY ARG ALA GLY ILE PRO ASP SEQRES 23 A 306 CYS ASP GLN THR ARG SER PHE LEU SER LEU PHE VAL LEU SEQRES 24 A 306 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 306 MET ILE ARG VAL ALA CYS VAL GLY ILE THR VAL MET ASP SEQRES 2 B 306 ARG ILE TYR TYR VAL GLU GLY LEU PRO THR GLU SER GLY SEQRES 3 B 306 LYS TYR VAL ALA ARG ASN TYR THR GLU VAL GLY GLY GLY SEQRES 4 B 306 PRO ALA ALA THR ALA ALA VAL ALA ALA ALA ARG LEU GLY SEQRES 5 B 306 ALA GLN VAL ASP PHE ILE GLY ARG VAL GLY ASP ASP ASP SEQRES 6 B 306 THR GLY ASN SER LEU LEU ALA GLU LEU GLU SER TRP GLY SEQRES 7 B 306 VAL ASN THR ARG TYR THR LYS ARG TYR ASN GLN ALA LYS SEQRES 8 B 306 SER SER GLN SER ALA ILE MET VAL ASP THR LYS GLY GLU SEQRES 9 B 306 ARG ILE ILE ILE ASN TYR PRO SER PRO ASP LEU LEU PRO SEQRES 10 B 306 ASP ALA GLU TRP LEU GLU GLU ILE ASP PHE SER GLN TRP SEQRES 11 B 306 ASP VAL VAL LEU ALA ASP VAL ARG TRP HIS ASP GLY ALA SEQRES 12 B 306 LYS LYS ALA PHE THR LEU ALA ARG GLN ALA GLY VAL MET SEQRES 13 B 306 THR VAL LEU ASP GLY ASP ILE THR PRO GLN ASP ILE SER SEQRES 14 B 306 GLU LEU VAL ALA LEU SER ASP HIS ALA ALA PHE SER GLU SEQRES 15 B 306 PRO GLY LEU ALA ARG LEU THR GLY VAL LYS GLU MET ALA SEQRES 16 B 306 SER ALA LEU LYS GLN ALA GLN THR LEU THR ASN GLY HIS SEQRES 17 B 306 VAL TYR VAL THR GLN GLY SER ALA GLY CYS ASP TRP LEU SEQRES 18 B 306 GLU ASN GLY GLY ARG GLN HIS GLN PRO ALA PHE LYS VAL SEQRES 19 B 306 ASP VAL VAL ASP THR THR GLY ALA GLY ASP VAL PHE HIS SEQRES 20 B 306 GLY ALA LEU ALA VAL ALA LEU ALA THR SER GLY ASP LEU SEQRES 21 B 306 ALA GLU SER VAL ARG PHE ALA SER GLY VAL ALA ALA LEU SEQRES 22 B 306 LYS CYS THR ARG PRO GLY GLY ARG ALA GLY ILE PRO ASP SEQRES 23 B 306 CYS ASP GLN THR ARG SER PHE LEU SER LEU PHE VAL LEU SEQRES 24 B 306 GLU HIS HIS HIS HIS HIS HIS HET ADP A 401 27 HET RB8 A 402 15 HET MG A 403 1 HET ADP B 401 27 HET RB8 B 402 15 HET MG B 403 1 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM RB8 6-DEOXY-6-SULFO-D-FRUCTOSE HETNAM MG MAGNESIUM ION HETSYN RB8 [(2~{S},3~{S},4~{S},5~{R})-5-(HYDROXYMETHYL)-3,4,5- HETSYN 2 RB8 TRIS(OXIDANYL)OXOLAN-2-YL]METHANESULFONIC ACID FORMUL 3 ADP 2(C10 H15 N5 O10 P2) FORMUL 4 RB8 2(C6 H12 O8 S) FORMUL 5 MG 2(MG 2+) FORMUL 9 HOH *153(H2 O) HELIX 1 AA1 GLY A 39 LEU A 51 1 13 HELIX 2 AA2 ASP A 64 TRP A 77 1 14 HELIX 3 AA3 ALA A 119 ILE A 125 5 7 HELIX 4 AA4 ASP A 126 TRP A 130 5 5 HELIX 5 AA5 TRP A 139 GLY A 154 1 16 HELIX 6 AA6 ILE A 168 LEU A 174 1 7 HELIX 7 AA7 GLU A 182 GLY A 190 1 9 HELIX 8 AA8 GLU A 193 THR A 203 1 11 HELIX 9 AA9 GLY A 214 ALA A 216 5 3 HELIX 10 AB1 GLY A 241 GLY A 258 1 18 HELIX 11 AB2 ASP A 259 CYS A 275 1 17 HELIX 12 AB3 ASP A 286 LEU A 296 1 11 HELIX 13 AB4 PHE A 297 GLU A 300 5 4 HELIX 14 AB5 GLY B 39 LEU B 51 1 13 HELIX 15 AB6 ASP B 64 TRP B 77 1 14 HELIX 16 AB7 ALA B 119 ILE B 125 5 7 HELIX 17 AB8 ASP B 126 TRP B 130 5 5 HELIX 18 AB9 TRP B 139 ALA B 153 1 15 HELIX 19 AC1 ILE B 168 LEU B 174 1 7 HELIX 20 AC2 GLU B 182 GLY B 190 1 9 HELIX 21 AC3 GLU B 193 THR B 203 1 11 HELIX 22 AC4 GLY B 214 ALA B 216 5 3 HELIX 23 AC5 GLY B 241 SER B 257 1 17 HELIX 24 AC6 ASP B 259 CYS B 275 1 17 HELIX 25 AC7 ASP B 286 SER B 295 1 10 SHEET 1 AA1 9 VAL A 79 ASN A 80 0 SHEET 2 AA1 9 GLN A 54 ILE A 58 1 N PHE A 57 O ASN A 80 SHEET 3 AA1 9 ARG A 3 VAL A 7 1 N CYS A 6 O ILE A 58 SHEET 4 AA1 9 VAL A 132 ASP A 136 1 O LEU A 134 N ALA A 5 SHEET 5 AA1 9 MET A 156 GLY A 161 1 O MET A 156 N VAL A 133 SHEET 6 AA1 9 HIS A 177 SER A 181 1 O HIS A 177 N LEU A 159 SHEET 7 AA1 9 HIS A 208 THR A 212 1 O HIS A 208 N ALA A 178 SHEET 8 AA1 9 CYS A 218 GLU A 222 -1 O ASP A 219 N VAL A 211 SHEET 9 AA1 9 GLY A 225 GLN A 229 -1 O GLN A 227 N TRP A 220 SHEET 1 AA2 5 ASN A 32 GLY A 38 0 SHEET 2 AA2 5 VAL A 11 TYR A 17 -1 N ASP A 13 O VAL A 36 SHEET 3 AA2 5 SER A 93 VAL A 99 1 O ILE A 97 N TYR A 16 SHEET 4 AA2 5 ARG A 105 TYR A 110 -1 O ILE A 108 N ALA A 96 SHEET 5 AA2 5 GLY B 26 VAL B 29 1 O TYR B 28 N ASN A 109 SHEET 1 AA3 5 GLY A 26 VAL A 29 0 SHEET 2 AA3 5 ARG B 105 TYR B 110 1 O ILE B 107 N TYR A 28 SHEET 3 AA3 5 SER B 93 VAL B 99 -1 N ALA B 96 O ILE B 108 SHEET 4 AA3 5 VAL B 11 TYR B 17 1 N TYR B 16 O ILE B 97 SHEET 5 AA3 5 ASN B 32 GLY B 38 -1 O VAL B 36 N ASP B 13 SHEET 1 AA4 2 ARG A 60 VAL A 61 0 SHEET 2 AA4 2 LYS A 85 ARG A 86 1 O LYS A 85 N VAL A 61 SHEET 1 AA5 9 VAL B 79 ASN B 80 0 SHEET 2 AA5 9 GLN B 54 ILE B 58 1 N PHE B 57 O ASN B 80 SHEET 3 AA5 9 ARG B 3 VAL B 7 1 N CYS B 6 O ILE B 58 SHEET 4 AA5 9 VAL B 132 ASP B 136 1 O LEU B 134 N ALA B 5 SHEET 5 AA5 9 MET B 156 GLY B 161 1 O MET B 156 N VAL B 133 SHEET 6 AA5 9 HIS B 177 SER B 181 1 O HIS B 177 N LEU B 159 SHEET 7 AA5 9 HIS B 208 THR B 212 1 O HIS B 208 N ALA B 178 SHEET 8 AA5 9 CYS B 218 GLU B 222 -1 O ASP B 219 N VAL B 211 SHEET 9 AA5 9 GLY B 225 GLN B 229 -1 O GLN B 227 N TRP B 220 SHEET 1 AA6 2 ARG B 60 GLY B 62 0 SHEET 2 AA6 2 LYS B 85 TYR B 87 1 O TYR B 87 N VAL B 61 LINK O1A ADP A 401 MG MG A 403 1555 1555 1.92 LINK MG MG A 403 O HOH A 502 1555 1555 2.07 LINK MG MG A 403 O HOH A 503 1555 1555 2.22 LINK MG MG A 403 O HOH A 538 1555 1555 2.14 LINK MG MG A 403 O HOH A 553 1555 1555 2.25 LINK MG MG A 403 O HOH A 559 1555 1555 2.10 LINK O2A ADP B 401 MG MG B 403 1555 1555 1.92 LINK MG MG B 403 O HOH B 503 1555 1555 2.23 LINK MG MG B 403 O HOH B 513 1555 1555 2.03 LINK MG MG B 403 O HOH B 520 1555 1555 1.92 LINK MG MG B 403 O HOH B 525 1555 1555 2.06 LINK MG MG B 403 O HOH B 526 1555 1555 2.15 CRYST1 94.880 94.880 167.430 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010540 0.006085 0.000000 0.00000 SCALE2 0.000000 0.012170 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005973 0.00000