HEADER PEPTIDE BINDING PROTEIN 23-SEP-20 7AGZ TITLE BSRV NO-HISTAGGED COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROAD SPECIFICITY AMINO-ACID RACEMASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: BROAD SPECTRUM RACEMASE; COMPND 5 EC: 5.1.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39315 SOURCE 3 / EL TOR INABA N16961); SOURCE 4 ORGANISM_TAXID: 243277; SOURCE 5 STRAIN: ATCC 39315 / EL TOR INABA N16961; SOURCE 6 GENE: BSRV, VC_1312; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BROAD SPECTRUM, RACEMASE, PEPTIDOGLYCAN BINDING PROTEIN, PEPTIDE KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR C.CARRASCO-LOPEZ,A.ROJAS-ALTUVE,A.ESPAILLAT,F.CAVA,J.A.HERMOSO REVDAT 3 31-JAN-24 7AGZ 1 REMARK REVDAT 2 20-APR-22 7AGZ 1 JRNL REVDAT 1 06-OCT-21 7AGZ 0 JRNL AUTH A.ESPAILLAT,C.CARRASCO-LOPEZ,N.BERNARDO-GARCIA, JRNL AUTH 2 A.ROJAS-ALTUVE,J.KLETT,A.MORREALE,J.A.HERMOSO,F.CAVA JRNL TITL BINDING OF NON-CANONICAL PEPTIDOGLYCAN CONTROLS VIBRIO JRNL TITL 2 CHOLERAE BROAD SPECTRUM RACEMASE ACTIVITY. JRNL REF COMPUT STRUCT BIOTECHNOL J V. 19 1119 2021 JRNL REFN ESSN 2001-0370 JRNL PMID 33680355 JRNL DOI 10.1016/J.CSBJ.2021.01.031 REMARK 2 REMARK 2 RESOLUTION. 1.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 51.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 111052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.180 REMARK 3 FREE R VALUE TEST SET COUNT : 7979 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 51.2000 - 4.7100 1.00 3722 279 0.1844 0.1836 REMARK 3 2 4.7100 - 3.7400 1.00 3530 299 0.1472 0.1625 REMARK 3 3 3.7400 - 3.2700 1.00 3485 286 0.1586 0.1837 REMARK 3 4 3.2700 - 2.9700 1.00 3484 271 0.1768 0.1805 REMARK 3 5 2.9700 - 2.7500 1.00 3491 264 0.1777 0.1870 REMARK 3 6 2.7500 - 2.5900 1.00 3421 290 0.1769 0.1732 REMARK 3 7 2.5900 - 2.4600 1.00 3443 276 0.1773 0.1922 REMARK 3 8 2.4600 - 2.3500 1.00 3454 264 0.1848 0.1956 REMARK 3 9 2.3500 - 2.2600 1.00 3442 269 0.1811 0.1943 REMARK 3 10 2.2600 - 2.1900 1.00 3394 304 0.1712 0.1881 REMARK 3 11 2.1900 - 2.1200 1.00 3432 275 0.1732 0.1818 REMARK 3 12 2.1200 - 2.0600 1.00 3386 281 0.1748 0.1962 REMARK 3 13 2.0600 - 2.0000 1.00 3391 274 0.1809 0.1960 REMARK 3 14 2.0000 - 1.9500 1.00 3447 277 0.1818 0.2070 REMARK 3 15 1.9500 - 1.9100 1.00 3425 248 0.1973 0.2239 REMARK 3 16 1.9100 - 1.8700 1.00 3429 255 0.1955 0.2359 REMARK 3 17 1.8700 - 1.8300 1.00 3455 242 0.2018 0.2386 REMARK 3 18 1.8300 - 1.8000 1.00 3428 214 0.2046 0.2214 REMARK 3 19 1.8000 - 1.7700 1.00 3410 271 0.2045 0.2206 REMARK 3 20 1.7700 - 1.7400 1.00 3409 257 0.2202 0.2809 REMARK 3 21 1.7400 - 1.7100 1.00 3416 255 0.2161 0.2181 REMARK 3 22 1.7100 - 1.6800 1.00 3388 255 0.2228 0.2401 REMARK 3 23 1.6800 - 1.6600 1.00 3440 261 0.2294 0.2596 REMARK 3 24 1.6600 - 1.6300 1.00 3353 278 0.2325 0.2779 REMARK 3 25 1.6300 - 1.6100 1.00 3406 262 0.2392 0.2894 REMARK 3 26 1.6100 - 1.5900 1.00 3407 240 0.2427 0.2663 REMARK 3 27 1.5900 - 1.5700 1.00 3430 261 0.2503 0.2706 REMARK 3 28 1.5700 - 1.5500 1.00 3367 268 0.2587 0.3134 REMARK 3 29 1.5500 - 1.5300 1.00 3381 273 0.2614 0.3027 REMARK 3 30 1.5300 - 1.5200 1.00 3407 230 0.2722 0.2860 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.152 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.916 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.34 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.016 6114 REMARK 3 ANGLE : 1.563 8299 REMARK 3 CHIRALITY : 0.098 949 REMARK 3 PLANARITY : 0.014 1084 REMARK 3 DIHEDRAL : 17.933 2269 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.1324 32.3476 -7.8505 REMARK 3 T TENSOR REMARK 3 T11: 0.1691 T22: 0.0949 REMARK 3 T33: 0.1468 T12: 0.0298 REMARK 3 T13: 0.0149 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 0.8458 L22: 0.2622 REMARK 3 L33: 1.6001 L12: -0.3805 REMARK 3 L13: -0.2714 L23: 0.0622 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: 0.0977 S13: -0.1192 REMARK 3 S21: -0.0548 S22: -0.0169 S23: -0.0250 REMARK 3 S31: 0.1974 S32: 0.1790 S33: 0.0133 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 278 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3118 39.8061 13.4188 REMARK 3 T TENSOR REMARK 3 T11: 0.1290 T22: 0.0911 REMARK 3 T33: 0.1017 T12: -0.0012 REMARK 3 T13: 0.0070 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.6746 L22: 0.3209 REMARK 3 L33: 1.2528 L12: -0.1328 REMARK 3 L13: -0.5649 L23: 0.1924 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: -0.1966 S13: 0.0544 REMARK 3 S21: 0.0988 S22: 0.0114 S23: 0.0174 REMARK 3 S31: 0.0641 S32: 0.0501 S33: 0.0272 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 279 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.4968 46.8340 -27.8029 REMARK 3 T TENSOR REMARK 3 T11: 0.0870 T22: 0.0776 REMARK 3 T33: 0.0986 T12: -0.0058 REMARK 3 T13: 0.0082 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.9939 L22: 0.6014 REMARK 3 L33: 1.6449 L12: -0.2940 REMARK 3 L13: 0.0692 L23: -0.3839 REMARK 3 S TENSOR REMARK 3 S11: -0.0354 S12: 0.0273 S13: 0.1033 REMARK 3 S21: -0.0310 S22: -0.0107 S23: -0.0619 REMARK 3 S31: -0.0017 S32: 0.0676 S33: 0.0365 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 379 THROUGH 409 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8528 42.3266 -11.0985 REMARK 3 T TENSOR REMARK 3 T11: 0.0888 T22: 0.1328 REMARK 3 T33: 0.0911 T12: -0.0070 REMARK 3 T13: 0.0108 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.3042 L22: 1.9453 REMARK 3 L33: 2.2079 L12: 0.0516 REMARK 3 L13: -0.7265 L23: 0.2716 REMARK 3 S TENSOR REMARK 3 S11: -0.0284 S12: -0.0412 S13: 0.0664 REMARK 3 S21: 0.0012 S22: 0.0589 S23: -0.0842 REMARK 3 S31: -0.0247 S32: 0.1101 S33: -0.0105 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 24 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9958 31.9804 -14.9831 REMARK 3 T TENSOR REMARK 3 T11: 0.1361 T22: 0.0863 REMARK 3 T33: 0.1098 T12: -0.0233 REMARK 3 T13: 0.0075 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 1.5368 L22: 0.7508 REMARK 3 L33: 1.5903 L12: 0.1231 REMARK 3 L13: 0.6976 L23: 0.1846 REMARK 3 S TENSOR REMARK 3 S11: 0.0969 S12: -0.1486 S13: -0.0846 REMARK 3 S21: 0.1378 S22: -0.0209 S23: -0.0229 REMARK 3 S31: 0.1801 S32: -0.2010 S33: 0.2519 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 63 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0853 28.6679 -32.3223 REMARK 3 T TENSOR REMARK 3 T11: 0.1195 T22: 0.1019 REMARK 3 T33: 0.1155 T12: 0.0038 REMARK 3 T13: -0.0059 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.8882 L22: 0.5888 REMARK 3 L33: 0.9508 L12: 0.0645 REMARK 3 L13: -0.5743 L23: 0.0916 REMARK 3 S TENSOR REMARK 3 S11: -0.0358 S12: 0.0489 S13: -0.0659 REMARK 3 S21: -0.0002 S22: 0.0294 S23: 0.0061 REMARK 3 S31: 0.1024 S32: -0.0260 S33: -0.0019 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 166 THROUGH 378 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.7761 45.3183 -21.2136 REMARK 3 T TENSOR REMARK 3 T11: 0.0913 T22: 0.0630 REMARK 3 T33: 0.1239 T12: 0.0111 REMARK 3 T13: 0.0115 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.3370 L22: 0.2024 REMARK 3 L33: 1.0610 L12: 0.0022 REMARK 3 L13: -0.0846 L23: 0.1336 REMARK 3 S TENSOR REMARK 3 S11: 0.0060 S12: 0.0452 S13: 0.0664 REMARK 3 S21: -0.0062 S22: -0.0091 S23: 0.0237 REMARK 3 S31: -0.0468 S32: -0.0820 S33: -0.0241 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 379 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0485 40.9254 -13.1473 REMARK 3 T TENSOR REMARK 3 T11: 0.1278 T22: 0.1606 REMARK 3 T33: 0.1429 T12: 0.0040 REMARK 3 T13: 0.0119 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 0.7860 L22: 0.1414 REMARK 3 L33: 0.6420 L12: -0.0826 REMARK 3 L13: -0.3835 L23: 0.0801 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: 0.0571 S13: 0.0409 REMARK 3 S21: 0.0075 S22: -0.0210 S23: 0.0924 REMARK 3 S31: -0.0169 S32: -0.0801 S33: 0.0032 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AGZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292111403. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : AIMLESS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 111214 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.516 REMARK 200 RESOLUTION RANGE LOW (A) : 51.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.57 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4BEU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS PROPANE PH 7.5, 0.2 M REMARK 280 SODIUM IODIDE, AND 24% (P/V) OF PEG 3350, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.01500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 80.10500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 80.10500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.01500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 410 REMARK 465 TYR A 411 REMARK 465 PHE A 412 REMARK 465 GLN A 413 REMARK 465 PHE B 412 REMARK 465 GLN B 413 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 74 C4A PLP B 501 1.13 REMARK 500 NZ LYS A 74 C4A PLP A 501 1.17 REMARK 500 O HOH B 839 O HOH B 919 1.95 REMARK 500 O HOH A 885 O HOH B 622 2.11 REMARK 500 O HOH A 707 O HOH A 915 2.16 REMARK 500 O HOH A 777 O HOH A 798 2.17 REMARK 500 OH TYR B 411 O HOH B 601 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 29 129.30 -33.06 REMARK 500 ASP A 29 129.30 -32.74 REMARK 500 ARG A 173 -83.58 -124.49 REMARK 500 TYR A 208 44.94 -92.18 REMARK 500 LEU A 256 -137.31 49.92 REMARK 500 GLU A 274 1.18 -68.56 REMARK 500 LYS A 329 -45.81 -131.78 REMARK 500 GLN A 373 -125.82 58.39 REMARK 500 ASP B 29 116.21 -39.27 REMARK 500 ASP B 29 116.21 -39.31 REMARK 500 ARG B 173 -87.19 -127.34 REMARK 500 LEU B 256 -136.69 50.21 REMARK 500 GLU B 274 0.43 -67.44 REMARK 500 ASP B 300 -2.49 74.87 REMARK 500 PRO B 315 49.50 -84.80 REMARK 500 LYS B 329 -50.04 -132.72 REMARK 500 GLN B 373 -123.84 58.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE A 28 10.56 REMARK 500 ILE A 28 11.12 REMARK 500 SER A 346 -11.01 REMARK 500 HIS B 27 11.12 REMARK 500 HIS B 27 11.14 REMARK 500 PRO B 194 12.60 REMARK 500 PRO B 194 12.50 REMARK 500 SER B 195 -10.75 REMARK 500 SER B 195 -11.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 964 DISTANCE = 5.84 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PLP A 501 REMARK 610 PLP B 501 DBREF 7AGZ A 24 407 UNP Q9KSE5 BSR_VIBCH 24 407 DBREF 7AGZ B 24 407 UNP Q9KSE5 BSR_VIBCH 24 407 SEQADV 7AGZ GLU A 408 UNP Q9KSE5 EXPRESSION TAG SEQADV 7AGZ ASN A 409 UNP Q9KSE5 EXPRESSION TAG SEQADV 7AGZ LEU A 410 UNP Q9KSE5 EXPRESSION TAG SEQADV 7AGZ TYR A 411 UNP Q9KSE5 EXPRESSION TAG SEQADV 7AGZ PHE A 412 UNP Q9KSE5 EXPRESSION TAG SEQADV 7AGZ GLN A 413 UNP Q9KSE5 EXPRESSION TAG SEQADV 7AGZ GLU B 408 UNP Q9KSE5 EXPRESSION TAG SEQADV 7AGZ ASN B 409 UNP Q9KSE5 EXPRESSION TAG SEQADV 7AGZ LEU B 410 UNP Q9KSE5 EXPRESSION TAG SEQADV 7AGZ TYR B 411 UNP Q9KSE5 EXPRESSION TAG SEQADV 7AGZ PHE B 412 UNP Q9KSE5 EXPRESSION TAG SEQADV 7AGZ GLN B 413 UNP Q9KSE5 EXPRESSION TAG SEQRES 1 A 390 ALA PRO LEU HIS ILE ASP THR ALA LEU PRO ASP ALA ALA SEQRES 2 A 390 GLN ILE GLN GLN SER ASN SER TRP LEU GLU ILE SER LEU SEQRES 3 A 390 GLY GLN PHE GLN SER ASN ILE GLU GLN PHE LYS SER HIS SEQRES 4 A 390 MET ASN ALA ASN THR LYS ILE CYS ALA ILE MET LYS ALA SEQRES 5 A 390 ASP ALA TYR GLY ASN GLY ILE ARG GLY LEU MET PRO THR SEQRES 6 A 390 ILE ILE ALA GLN GLY ILE PRO CYS VAL GLY VAL ALA SER SEQRES 7 A 390 ASN ALA GLU ALA ARG ALA VAL ARG GLU SER GLY PHE LYS SEQRES 8 A 390 GLY GLU LEU ILE ARG VAL ARG SER ALA SER LEU SER GLU SEQRES 9 A 390 MET SER SER ALA LEU ASP LEU ASN ILE GLU GLU LEU ILE SEQRES 10 A 390 GLY THR HIS GLN GLN ALA LEU ASP LEU ALA GLU LEU ALA SEQRES 11 A 390 LYS GLN SER GLY LYS THR LEU LYS VAL HIS ILE ALA LEU SEQRES 12 A 390 ASN ASP GLY GLY MET GLY ARG ASN GLY ILE ASP MET THR SEQRES 13 A 390 THR GLU ALA GLY LYS LYS GLU ALA VAL SER ILE ALA THR SEQRES 14 A 390 GLN PRO SER LEU SER VAL VAL GLY ILE MET THR HIS PHE SEQRES 15 A 390 PRO ASN TYR ASN ALA ASP GLU VAL ARG ALA LYS LEU ALA SEQRES 16 A 390 GLN PHE LYS GLU SER SER THR TRP LEU MET GLN GLN ALA SEQRES 17 A 390 ASN LEU LYS ARG GLU GLU ILE THR LEU HIS VAL ALA ASN SEQRES 18 A 390 SER TYR THR ALA LEU ASN VAL PRO GLU ALA GLN LEU ASP SEQRES 19 A 390 MET VAL ARG PRO GLY GLY VAL LEU PHE GLY ASP LEU PRO SEQRES 20 A 390 THR ASN PRO GLU TYR PRO SER ILE VAL SER PHE LYS THR SEQRES 21 A 390 ARG VAL SER SER LEU HIS HIS LEU PRO LYS ASP SER THR SEQRES 22 A 390 VAL GLY TYR ASP SER THR PHE THR THR SER ARG ASP SER SEQRES 23 A 390 VAL LEU ALA ASN LEU PRO VAL GLY TYR SER ASP GLY TYR SEQRES 24 A 390 PRO ARG LYS MET GLY ASN LYS ALA GLU VAL LEU ILE ASN SEQRES 25 A 390 GLY GLN ARG ALA LYS VAL VAL GLY VAL THR SER MET ASN SEQRES 26 A 390 THR THR VAL VAL ASP VAL THR GLU ILE LYS GLY VAL LEU SEQRES 27 A 390 PRO GLY GLN GLU VAL VAL LEU PHE GLY GLN GLN GLN LYS SEQRES 28 A 390 GLN SER ILE ALA VAL SER GLU MET GLU ASN ASN ALA GLU SEQRES 29 A 390 LEU ILE PHE PRO GLU LEU TYR THR LEU TRP GLY THR SER SEQRES 30 A 390 ASN PRO ARG PHE TYR VAL LYS GLU ASN LEU TYR PHE GLN SEQRES 1 B 390 ALA PRO LEU HIS ILE ASP THR ALA LEU PRO ASP ALA ALA SEQRES 2 B 390 GLN ILE GLN GLN SER ASN SER TRP LEU GLU ILE SER LEU SEQRES 3 B 390 GLY GLN PHE GLN SER ASN ILE GLU GLN PHE LYS SER HIS SEQRES 4 B 390 MET ASN ALA ASN THR LYS ILE CYS ALA ILE MET LYS ALA SEQRES 5 B 390 ASP ALA TYR GLY ASN GLY ILE ARG GLY LEU MET PRO THR SEQRES 6 B 390 ILE ILE ALA GLN GLY ILE PRO CYS VAL GLY VAL ALA SER SEQRES 7 B 390 ASN ALA GLU ALA ARG ALA VAL ARG GLU SER GLY PHE LYS SEQRES 8 B 390 GLY GLU LEU ILE ARG VAL ARG SER ALA SER LEU SER GLU SEQRES 9 B 390 MET SER SER ALA LEU ASP LEU ASN ILE GLU GLU LEU ILE SEQRES 10 B 390 GLY THR HIS GLN GLN ALA LEU ASP LEU ALA GLU LEU ALA SEQRES 11 B 390 LYS GLN SER GLY LYS THR LEU LYS VAL HIS ILE ALA LEU SEQRES 12 B 390 ASN ASP GLY GLY MET GLY ARG ASN GLY ILE ASP MET THR SEQRES 13 B 390 THR GLU ALA GLY LYS LYS GLU ALA VAL SER ILE ALA THR SEQRES 14 B 390 GLN PRO SER LEU SER VAL VAL GLY ILE MET THR HIS PHE SEQRES 15 B 390 PRO ASN TYR ASN ALA ASP GLU VAL ARG ALA LYS LEU ALA SEQRES 16 B 390 GLN PHE LYS GLU SER SER THR TRP LEU MET GLN GLN ALA SEQRES 17 B 390 ASN LEU LYS ARG GLU GLU ILE THR LEU HIS VAL ALA ASN SEQRES 18 B 390 SER TYR THR ALA LEU ASN VAL PRO GLU ALA GLN LEU ASP SEQRES 19 B 390 MET VAL ARG PRO GLY GLY VAL LEU PHE GLY ASP LEU PRO SEQRES 20 B 390 THR ASN PRO GLU TYR PRO SER ILE VAL SER PHE LYS THR SEQRES 21 B 390 ARG VAL SER SER LEU HIS HIS LEU PRO LYS ASP SER THR SEQRES 22 B 390 VAL GLY TYR ASP SER THR PHE THR THR SER ARG ASP SER SEQRES 23 B 390 VAL LEU ALA ASN LEU PRO VAL GLY TYR SER ASP GLY TYR SEQRES 24 B 390 PRO ARG LYS MET GLY ASN LYS ALA GLU VAL LEU ILE ASN SEQRES 25 B 390 GLY GLN ARG ALA LYS VAL VAL GLY VAL THR SER MET ASN SEQRES 26 B 390 THR THR VAL VAL ASP VAL THR GLU ILE LYS GLY VAL LEU SEQRES 27 B 390 PRO GLY GLN GLU VAL VAL LEU PHE GLY GLN GLN GLN LYS SEQRES 28 B 390 GLN SER ILE ALA VAL SER GLU MET GLU ASN ASN ALA GLU SEQRES 29 B 390 LEU ILE PHE PRO GLU LEU TYR THR LEU TRP GLY THR SER SEQRES 30 B 390 ASN PRO ARG PHE TYR VAL LYS GLU ASN LEU TYR PHE GLN HET PLP A 501 15 HET GOL A 502 6 HET CL A 503 1 HET PLP B 501 15 HET GOL B 502 6 HET CL B 503 1 HETNAM PLP PYRIDOXAL-5'-PHOSPHATE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN PLP VITAMIN B6 PHOSPHATE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 PLP 2(C8 H10 N O6 P) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 CL 2(CL 1-) FORMUL 9 HOH *703(H2 O) HELIX 1 AA1 ASP A 34 GLN A 39 1 6 HELIX 2 AA2 LEU A 49 SER A 61 1 13 HELIX 3 AA3 MET A 73 GLY A 79 1 7 HELIX 4 AA4 GLY A 81 GLN A 92 1 12 HELIX 5 AA5 SER A 101 SER A 111 1 11 HELIX 6 AA6 SER A 124 ALA A 131 1 8 HELIX 7 AA7 LEU A 132 ASN A 135 5 4 HELIX 8 AA8 THR A 142 GLY A 157 1 16 HELIX 9 AA9 THR A 180 THR A 192 1 13 HELIX 10 AB1 ASN A 209 ALA A 231 1 23 HELIX 11 AB2 LYS A 234 ILE A 238 5 5 HELIX 12 AB3 ASN A 244 VAL A 251 1 8 HELIX 13 AB4 PRO A 252 GLN A 255 5 4 HELIX 14 AB5 GLY A 262 GLY A 267 5 6 HELIX 15 AB6 GLY A 298 THR A 302 5 5 HELIX 16 AB7 GLY A 317 GLY A 321 5 5 HELIX 17 AB8 PRO A 323 GLY A 327 5 5 HELIX 18 AB9 ALA A 378 GLU A 387 1 10 HELIX 19 AC1 ILE A 389 ASN A 401 1 13 HELIX 20 AC2 ASP B 34 GLN B 40 1 7 HELIX 21 AC3 LEU B 49 SER B 61 1 13 HELIX 22 AC4 MET B 73 GLY B 79 1 7 HELIX 23 AC5 GLY B 81 GLN B 92 1 12 HELIX 24 AC6 SER B 101 SER B 111 1 11 HELIX 25 AC7 SER B 124 SER B 130 1 7 HELIX 26 AC8 ALA B 131 ASN B 135 5 5 HELIX 27 AC9 THR B 142 GLY B 157 1 16 HELIX 28 AD1 THR B 180 THR B 192 1 13 HELIX 29 AD2 ASN B 209 ALA B 231 1 23 HELIX 30 AD3 LYS B 234 ILE B 238 5 5 HELIX 31 AD4 ASN B 244 VAL B 251 1 8 HELIX 32 AD5 PRO B 252 GLN B 255 5 4 HELIX 33 AD6 GLY B 262 GLY B 267 1 6 HELIX 34 AD7 GLY B 298 THR B 302 5 5 HELIX 35 AD8 GLY B 317 GLY B 321 5 5 HELIX 36 AD9 PRO B 323 GLY B 327 5 5 HELIX 37 AE1 ALA B 378 GLU B 387 1 10 HELIX 38 AE2 ILE B 389 ASN B 401 1 13 SHEET 1 AA1 4 GLN A 337 LYS A 340 0 SHEET 2 AA1 4 GLU A 331 ILE A 334 -1 N ILE A 334 O GLN A 337 SHEET 3 AA1 4 GLU A 365 GLN A 372 -1 O VAL A 367 N LEU A 333 SHEET 4 AA1 4 GLN A 375 ILE A 377 -1 O GLN A 375 N GLN A 372 SHEET 1 AA2 6 GLN A 337 LYS A 340 0 SHEET 2 AA2 6 GLU A 331 ILE A 334 -1 N ILE A 334 O GLN A 337 SHEET 3 AA2 6 GLU A 365 GLN A 372 -1 O VAL A 367 N LEU A 333 SHEET 4 AA2 6 VAL A 279 ARG A 284 -1 N PHE A 281 O LEU A 368 SHEET 5 AA2 6 SER A 43 SER A 48 -1 N TRP A 44 O LYS A 282 SHEET 6 AA2 6 ARG A 403 VAL A 406 1 O PHE A 404 N ILE A 47 SHEET 1 AA3 8 GLU A 116 ARG A 119 0 SHEET 2 AA3 8 CYS A 96 VAL A 99 1 N VAL A 97 O ILE A 118 SHEET 3 AA3 8 LYS A 68 ILE A 72 1 N ALA A 71 O GLY A 98 SHEET 4 AA3 8 MET A 258 VAL A 259 1 O VAL A 259 N CYS A 70 SHEET 5 AA3 8 THR A 239 ALA A 243 1 O LEU A 240 N MET A 258 SHEET 6 AA3 8 LEU A 196 MET A 202 1 N VAL A 199 O THR A 239 SHEET 7 AA3 8 LEU A 160 ALA A 165 1 N VAL A 162 O SER A 197 SHEET 8 AA3 8 GLU A 138 ILE A 140 1 N GLU A 138 O HIS A 163 SHEET 1 AA4 3 SER A 287 LEU A 291 0 SHEET 2 AA4 3 SER A 309 LEU A 314 -1 O LEU A 311 N HIS A 289 SHEET 3 AA4 3 THR A 350 ASP A 353 -1 O VAL A 352 N ALA A 312 SHEET 1 AA5 2 THR A 296 VAL A 297 0 SHEET 2 AA5 2 PHE A 303 THR A 304 -1 O PHE A 303 N VAL A 297 SHEET 1 AA6 7 SER B 287 LEU B 291 0 SHEET 2 AA6 7 SER B 309 LEU B 314 -1 O SER B 309 N LEU B 291 SHEET 3 AA6 7 THR B 350 ASP B 353 -1 O THR B 350 N LEU B 314 SHEET 4 AA6 7 GLN B 337 VAL B 341 -1 N LYS B 340 O ASP B 353 SHEET 5 AA6 7 GLU B 331 ILE B 334 -1 N ILE B 334 O GLN B 337 SHEET 6 AA6 7 GLU B 365 GLN B 372 -1 O VAL B 367 N LEU B 333 SHEET 7 AA6 7 GLN B 375 ILE B 377 -1 O ILE B 377 N GLY B 370 SHEET 1 AA7 9 SER B 287 LEU B 291 0 SHEET 2 AA7 9 SER B 309 LEU B 314 -1 O SER B 309 N LEU B 291 SHEET 3 AA7 9 THR B 350 ASP B 353 -1 O THR B 350 N LEU B 314 SHEET 4 AA7 9 GLN B 337 VAL B 341 -1 N LYS B 340 O ASP B 353 SHEET 5 AA7 9 GLU B 331 ILE B 334 -1 N ILE B 334 O GLN B 337 SHEET 6 AA7 9 GLU B 365 GLN B 372 -1 O VAL B 367 N LEU B 333 SHEET 7 AA7 9 VAL B 279 ARG B 284 -1 N PHE B 281 O LEU B 368 SHEET 8 AA7 9 SER B 43 SER B 48 -1 N TRP B 44 O LYS B 282 SHEET 9 AA7 9 ARG B 403 VAL B 406 1 O PHE B 404 N LEU B 45 SHEET 1 AA8 8 GLU B 116 ARG B 119 0 SHEET 2 AA8 8 CYS B 96 VAL B 99 1 N VAL B 97 O ILE B 118 SHEET 3 AA8 8 LYS B 68 ILE B 72 1 N ALA B 71 O GLY B 98 SHEET 4 AA8 8 MET B 258 VAL B 259 1 O VAL B 259 N CYS B 70 SHEET 5 AA8 8 THR B 239 ALA B 243 1 O LEU B 240 N MET B 258 SHEET 6 AA8 8 LEU B 196 MET B 202 1 N VAL B 199 O THR B 239 SHEET 7 AA8 8 LEU B 160 ALA B 165 1 N LEU B 160 O SER B 197 SHEET 8 AA8 8 GLU B 138 ILE B 140 1 N GLU B 138 O HIS B 163 SHEET 1 AA9 2 THR B 296 VAL B 297 0 SHEET 2 AA9 2 PHE B 303 THR B 304 -1 O PHE B 303 N VAL B 297 SSBOND 1 CYS A 70 CYS A 96 1555 1555 2.15 SSBOND 2 CYS B 70 CYS B 96 1555 1555 2.23 CRYST1 54.030 82.090 160.210 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018508 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012182 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006242 0.00000