HEADER ONCOPROTEIN 24-SEP-20 7AH3 TITLE KINASE DOMAIN OF CSRC IN COMPLEX WITH A PYRAZOLOPYRIMIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTO-ONCOGENE C-SRC,PP60C-SRC,P60-SRC; COMPND 5 EC: 2.7.10.2; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 GENE: SRC; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS KINASE DOMAIN SUBSTITUTED PYRAZOLOPYRIMIDINE INHIBITOR COMPLEX C-SRC KEYWDS 2 INHIBITOR, ONCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.DELLO IACONO,S.KLEINBOELTING,A.L.FALLACARA,D.RAUH REVDAT 2 31-JAN-24 7AH3 1 REMARK REVDAT 1 06-OCT-21 7AH3 0 JRNL AUTH L.DELLO IACONO,S.KLEINBOELTING,R.PASSANNANTI,A.L.FALLACARA, JRNL AUTH 2 F.DI PISA,A.RICHTERS,F.MUSUMECI,D.RAUH,S.SCHENONE,M.BOTTA JRNL TITL INSIGHTS INTO THE BINDING OF PYRAZOLOPYRIMIDINES TO SRC JRNL TITL 2 KINASE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.950 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 53856 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2600 - 5.2000 0.97 2708 142 0.1827 0.2132 REMARK 3 2 5.2000 - 4.1300 0.96 2684 141 0.1486 0.1870 REMARK 3 3 4.1300 - 3.6100 0.98 2696 142 0.1553 0.2155 REMARK 3 4 3.6100 - 3.2800 0.98 2731 144 0.1601 0.1872 REMARK 3 5 3.2800 - 3.0400 0.98 2705 143 0.1804 0.2282 REMARK 3 6 3.0400 - 2.8600 0.98 2742 144 0.1856 0.2048 REMARK 3 7 2.8600 - 2.7200 0.98 2736 144 0.1897 0.2355 REMARK 3 8 2.7200 - 2.6000 0.98 2727 143 0.1844 0.2291 REMARK 3 9 2.6000 - 2.5000 0.97 2670 141 0.1885 0.2183 REMARK 3 10 2.5000 - 2.4200 0.97 2732 144 0.2005 0.2663 REMARK 3 11 2.4200 - 2.3400 0.97 2655 139 0.2309 0.2806 REMARK 3 12 2.3400 - 2.2700 0.97 2703 143 0.2429 0.2975 REMARK 3 13 2.2700 - 2.2100 0.96 2656 140 0.2534 0.2780 REMARK 3 14 2.2100 - 2.1600 0.97 2701 142 0.2475 0.2699 REMARK 3 15 2.1600 - 2.1100 0.96 2636 139 0.2564 0.3033 REMARK 3 16 2.1100 - 2.0600 0.97 2730 144 0.2633 0.2706 REMARK 3 17 2.0600 - 2.0200 0.97 2659 140 0.2711 0.2953 REMARK 3 18 2.0200 - 1.9900 0.97 2734 143 0.2893 0.3312 REMARK 3 19 1.9900 - 1.9500 0.94 2558 135 0.3229 0.3616 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.255 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4310 REMARK 3 ANGLE : 1.691 5849 REMARK 3 CHIRALITY : 0.093 628 REMARK 3 PLANARITY : 0.010 741 REMARK 3 DIHEDRAL : 18.869 612 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 257 THROUGH 359 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.8521 4.0498 35.8294 REMARK 3 T TENSOR REMARK 3 T11: 0.6346 T22: 0.3869 REMARK 3 T33: 0.3277 T12: -0.0673 REMARK 3 T13: -0.0027 T23: -0.0453 REMARK 3 L TENSOR REMARK 3 L11: 0.8806 L22: 2.8357 REMARK 3 L33: 8.5310 L12: -0.1600 REMARK 3 L13: -0.1613 L23: 1.7189 REMARK 3 S TENSOR REMARK 3 S11: 0.0748 S12: -0.3384 S13: 0.1011 REMARK 3 S21: 1.0018 S22: -0.1641 S23: -0.0147 REMARK 3 S31: 0.1312 S32: -0.4722 S33: 0.0627 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 360 THROUGH 533 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9230 -4.1062 14.1766 REMARK 3 T TENSOR REMARK 3 T11: 0.2320 T22: 0.2575 REMARK 3 T33: 0.2366 T12: -0.0431 REMARK 3 T13: 0.0063 T23: -0.0414 REMARK 3 L TENSOR REMARK 3 L11: 3.1026 L22: 3.4012 REMARK 3 L33: 2.6315 L12: -0.5999 REMARK 3 L13: -0.4711 L23: 0.0667 REMARK 3 S TENSOR REMARK 3 S11: -0.0324 S12: 0.0665 S13: 0.0314 REMARK 3 S21: 0.1259 S22: -0.0745 S23: 0.2371 REMARK 3 S31: -0.0089 S32: -0.4688 S33: 0.0990 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 256 THROUGH 311 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.4285 -24.7972 -17.7894 REMARK 3 T TENSOR REMARK 3 T11: 1.3363 T22: 0.5159 REMARK 3 T33: 0.4795 T12: 0.0537 REMARK 3 T13: -0.0350 T23: -0.0015 REMARK 3 L TENSOR REMARK 3 L11: 4.3070 L22: 4.9720 REMARK 3 L33: 5.1513 L12: -2.9171 REMARK 3 L13: -2.4593 L23: 1.1801 REMARK 3 S TENSOR REMARK 3 S11: 0.6308 S12: 0.3695 S13: 0.6351 REMARK 3 S21: -0.8597 S22: -0.3099 S23: -0.1236 REMARK 3 S31: -1.8884 S32: -0.0258 S33: -0.2007 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 312 THROUGH 402 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1521 -33.5953 -3.2117 REMARK 3 T TENSOR REMARK 3 T11: 0.3401 T22: 0.2302 REMARK 3 T33: 0.2610 T12: 0.0126 REMARK 3 T13: -0.0468 T23: 0.0078 REMARK 3 L TENSOR REMARK 3 L11: 2.1008 L22: 2.8803 REMARK 3 L33: 5.3938 L12: -0.1894 REMARK 3 L13: -1.2684 L23: -0.0043 REMARK 3 S TENSOR REMARK 3 S11: 0.0405 S12: 0.2728 S13: 0.0582 REMARK 3 S21: -0.6318 S22: -0.0810 S23: 0.1641 REMARK 3 S31: -0.2176 S32: 0.1136 S33: 0.0281 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 403 THROUGH 456 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.0077 -32.6484 5.4550 REMARK 3 T TENSOR REMARK 3 T11: 0.2145 T22: 0.3623 REMARK 3 T33: 0.2436 T12: 0.0228 REMARK 3 T13: 0.0173 T23: 0.0754 REMARK 3 L TENSOR REMARK 3 L11: 5.9468 L22: 5.1564 REMARK 3 L33: 2.9439 L12: 0.9163 REMARK 3 L13: -0.5831 L23: 0.9110 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: 0.1778 S13: -0.0974 REMARK 3 S21: -0.5457 S22: -0.1026 S23: -0.4682 REMARK 3 S31: -0.2156 S32: 0.4948 S33: 0.1082 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 457 THROUGH 533 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.2065 -36.5826 15.6428 REMARK 3 T TENSOR REMARK 3 T11: 0.2327 T22: 0.3380 REMARK 3 T33: 0.2093 T12: 0.0543 REMARK 3 T13: -0.0208 T23: 0.0764 REMARK 3 L TENSOR REMARK 3 L11: 3.2927 L22: 5.6738 REMARK 3 L33: 2.3872 L12: 1.7617 REMARK 3 L13: -0.1026 L23: 0.3203 REMARK 3 S TENSOR REMARK 3 S11: 0.0742 S12: -0.4566 S13: -0.1261 REMARK 3 S21: 0.2112 S22: -0.2138 S23: -0.1108 REMARK 3 S31: 0.0039 S32: 0.4052 S33: 0.1262 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AH3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 24-SEP-20. REMARK 100 THE DEPOSITION ID IS D_1292109400. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53873 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 43.260 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08281 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 1.19600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4O2P REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0 TO 30 MM NACL, PH 7.0 9 TO 20 % REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 248 REMARK 465 HIS A 249 REMARK 465 MET A 250 REMARK 465 GLN A 251 REMARK 465 THR A 252 REMARK 465 GLN A 253 REMARK 465 GLY A 254 REMARK 465 LEU A 255 REMARK 465 ALA A 256 REMARK 465 ASP A 413 REMARK 465 ASN A 414 REMARK 465 GLU A 415 REMARK 465 TYR A 416 REMARK 465 THR A 417 REMARK 465 ALA A 418 REMARK 465 ARG A 419 REMARK 465 GLN A 420 REMARK 465 GLY A 421 REMARK 465 ALA A 422 REMARK 465 LYS A 423 REMARK 465 PHE A 424 REMARK 465 GLY B 248 REMARK 465 HIS B 249 REMARK 465 MET B 250 REMARK 465 GLN B 251 REMARK 465 THR B 252 REMARK 465 GLN B 253 REMARK 465 GLY B 254 REMARK 465 LEU B 255 REMARK 465 GLY B 300 REMARK 465 THR B 301 REMARK 465 MET B 302 REMARK 465 SER B 303 REMARK 465 PRO B 304 REMARK 465 GLU B 305 REMARK 465 ALA B 306 REMARK 465 ALA B 408 REMARK 465 ARG B 409 REMARK 465 LEU B 410 REMARK 465 ILE B 411 REMARK 465 GLU B 412 REMARK 465 ASP B 413 REMARK 465 ASN B 414 REMARK 465 GLU B 415 REMARK 465 TYR B 416 REMARK 465 THR B 417 REMARK 465 ALA B 418 REMARK 465 ARG B 419 REMARK 465 GLN B 420 REMARK 465 GLY B 421 REMARK 465 ALA B 422 REMARK 465 LYS B 423 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 257 CG CD CE NZ REMARK 470 LYS A 298 CG CD CE NZ REMARK 470 SER A 303 OG REMARK 470 GLU A 305 CG CD OE1 OE2 REMARK 470 LEU A 308 CG CD1 CD2 REMARK 470 GLN A 309 CG CD OE1 NE2 REMARK 470 GLN A 312 CG CD OE1 NE2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 GLU A 353 CG CD OE1 OE2 REMARK 470 ARG A 409 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 410 CG CD1 CD2 REMARK 470 GLU A 412 CG CD OE1 OE2 REMARK 470 ARG A 469 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 489 CG CD OE1 OE2 REMARK 470 GLU A 531 CG CD OE1 OE2 REMARK 470 ARG B 268 CG CD NE CZ NH1 NH2 REMARK 470 CYS B 277 SG REMARK 470 LYS B 298 CG CD CE NZ REMARK 470 LEU B 308 CG CD1 CD2 REMARK 470 GLN B 309 CG CD OE1 NE2 REMARK 470 GLN B 312 CG CD OE1 NE2 REMARK 470 GLU B 320 CG CD OE1 OE2 REMARK 470 GLU B 331 CG CD OE1 OE2 REMARK 470 GLU B 353 CG CD OE1 OE2 REMARK 470 LYS B 356 CG CD CE NZ REMARK 470 LEU B 407 CG CD1 CD2 REMARK 470 ARG B 477 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 489 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASN B 397 NH2 ARG B 438 1455 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 268 CZ ARG A 268 NH2 0.101 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 268 NE - CZ - NH1 ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG A 268 NE - CZ - NH2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG A 318 CB - CG - CD ANGL. DEV. = 17.3 DEGREES REMARK 500 ARG A 318 CG - CD - NE ANGL. DEV. = 18.9 DEGREES REMARK 500 LEU A 407 CB - CG - CD2 ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG B 291 CD - NE - CZ ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG B 291 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 GLU B 332 C - N - CA ANGL. DEV. = -22.7 DEGREES REMARK 500 GLU B 332 OE1 - CD - OE2 ANGL. DEV. = -46.8 DEGREES REMARK 500 GLU B 332 CG - CD - OE1 ANGL. DEV. = 37.5 DEGREES REMARK 500 GLU B 332 CG - CD - OE2 ANGL. DEV. = -38.0 DEGREES REMARK 500 ARG B 388 CD - NE - CZ ANGL. DEV. = 15.2 DEGREES REMARK 500 ARG B 388 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG B 438 CD - NE - CZ ANGL. DEV. = 11.3 DEGREES REMARK 500 ARG B 438 NE - CZ - NH1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG B 438 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 GLN B 474 CA - CB - CG ANGL. DEV. = 19.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 385 -9.46 82.34 REMARK 500 ASP A 386 51.93 -148.36 REMARK 500 ALA A 403 -158.53 -94.42 REMARK 500 PHE B 278 -72.01 -94.91 REMARK 500 ARG B 385 -4.51 81.17 REMARK 500 ASP B 386 48.47 -146.19 REMARK 500 PHE B 405 36.97 -76.70 REMARK 500 PRO B 425 46.03 -86.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 388 0.14 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1257 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B1258 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B1259 DISTANCE = 8.56 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RCK A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RCK B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 1005 DBREF 7AH3 A 251 533 UNP P00523 SRC_CHICK 251 533 DBREF 7AH3 B 251 533 UNP P00523 SRC_CHICK 251 533 SEQADV 7AH3 GLY A 248 UNP P00523 EXPRESSION TAG SEQADV 7AH3 HIS A 249 UNP P00523 EXPRESSION TAG SEQADV 7AH3 MET A 250 UNP P00523 EXPRESSION TAG SEQADV 7AH3 GLY B 248 UNP P00523 EXPRESSION TAG SEQADV 7AH3 HIS B 249 UNP P00523 EXPRESSION TAG SEQADV 7AH3 MET B 250 UNP P00523 EXPRESSION TAG SEQRES 1 A 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP SEQRES 2 A 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU SEQRES 3 A 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP SEQRES 4 A 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO SEQRES 5 A 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN SEQRES 6 A 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU SEQRES 7 A 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR SEQRES 8 A 286 GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE LEU LYS SEQRES 9 A 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL SEQRES 10 A 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL SEQRES 11 A 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA SEQRES 12 A 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA SEQRES 13 A 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR SEQRES 14 A 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR SEQRES 15 A 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SEQRES 16 A 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU SEQRES 17 A 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN SEQRES 18 A 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET SEQRES 19 A 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU SEQRES 20 A 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO SEQRES 21 A 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE SEQRES 22 A 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU SEQRES 1 B 286 GLY HIS MET GLN THR GLN GLY LEU ALA LYS ASP ALA TRP SEQRES 2 B 286 GLU ILE PRO ARG GLU SER LEU ARG LEU GLU VAL LYS LEU SEQRES 3 B 286 GLY GLN GLY CYS PHE GLY GLU VAL TRP MET GLY THR TRP SEQRES 4 B 286 ASN GLY THR THR ARG VAL ALA ILE LYS THR LEU LYS PRO SEQRES 5 B 286 GLY THR MET SER PRO GLU ALA PHE LEU GLN GLU ALA GLN SEQRES 6 B 286 VAL MET LYS LYS LEU ARG HIS GLU LYS LEU VAL GLN LEU SEQRES 7 B 286 TYR ALA VAL VAL SER GLU GLU PRO ILE TYR ILE VAL THR SEQRES 8 B 286 GLU TYR MET SER LYS GLY SER LEU LEU ASP PHE LEU LYS SEQRES 9 B 286 GLY GLU MET GLY LYS TYR LEU ARG LEU PRO GLN LEU VAL SEQRES 10 B 286 ASP MET ALA ALA GLN ILE ALA SER GLY MET ALA TYR VAL SEQRES 11 B 286 GLU ARG MET ASN TYR VAL HIS ARG ASP LEU ARG ALA ALA SEQRES 12 B 286 ASN ILE LEU VAL GLY GLU ASN LEU VAL CYS LYS VAL ALA SEQRES 13 B 286 ASP PHE GLY LEU ALA ARG LEU ILE GLU ASP ASN GLU TYR SEQRES 14 B 286 THR ALA ARG GLN GLY ALA LYS PHE PRO ILE LYS TRP THR SEQRES 15 B 286 ALA PRO GLU ALA ALA LEU TYR GLY ARG PHE THR ILE LYS SEQRES 16 B 286 SER ASP VAL TRP SER PHE GLY ILE LEU LEU THR GLU LEU SEQRES 17 B 286 THR THR LYS GLY ARG VAL PRO TYR PRO GLY MET VAL ASN SEQRES 18 B 286 ARG GLU VAL LEU ASP GLN VAL GLU ARG GLY TYR ARG MET SEQRES 19 B 286 PRO CYS PRO PRO GLU CYS PRO GLU SER LEU HIS ASP LEU SEQRES 20 B 286 MET CYS GLN CYS TRP ARG LYS ASP PRO GLU GLU ARG PRO SEQRES 21 B 286 THR PHE GLU TYR LEU GLN ALA PHE LEU GLU ASP TYR PHE SEQRES 22 B 286 THR SER THR GLU PRO GLN TYR GLN PRO GLY GLU ASN LEU HET RCK A 601 34 HET EDO A 602 4 HET EDO A 603 4 HET DMS A 604 4 HET RCK B1001 34 HET EDO B1002 4 HET EDO B1003 4 HET GOL B1004 6 HET GOL B1005 6 HETNAM RCK ~{N}-[(2-FLUOROPHENYL)METHYL]-6-(MORPHOLIN-4- HETNAM 2 RCK YLMETHYLSULFANYL)-1-(2-PHENYLETHYL)PYRAZOLO[3,4- HETNAM 3 RCK D]PYRIMIDIN-4-AMINE HETNAM EDO 1,2-ETHANEDIOL HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 RCK 2(C25 H27 F N6 O S) FORMUL 4 EDO 4(C2 H6 O2) FORMUL 6 DMS C2 H6 O S FORMUL 10 GOL 2(C3 H8 O3) FORMUL 12 HOH *331(H2 O) HELIX 1 AA1 PRO A 263 GLU A 265 5 3 HELIX 2 AA2 SER A 303 LEU A 317 1 15 HELIX 3 AA3 SER A 345 GLY A 352 1 8 HELIX 4 AA4 MET A 354 LEU A 358 5 5 HELIX 5 AA5 ARG A 359 MET A 380 1 22 HELIX 6 AA6 ARG A 388 ALA A 390 5 3 HELIX 7 AA7 GLU A 396 LEU A 398 5 3 HELIX 8 AA8 ASP A 404 GLU A 412 1 9 HELIX 9 AA9 PRO A 425 THR A 429 5 5 HELIX 10 AB1 ALA A 430 GLY A 437 1 8 HELIX 11 AB2 THR A 440 THR A 457 1 18 HELIX 12 AB3 VAL A 467 ARG A 477 1 11 HELIX 13 AB4 PRO A 488 TRP A 499 1 12 HELIX 14 AB5 ASP A 502 ARG A 506 5 5 HELIX 15 AB6 THR A 508 ASP A 518 1 11 HELIX 16 AB7 ASP A 518 THR A 523 1 6 HELIX 17 AB8 PRO B 263 GLU B 265 5 3 HELIX 18 AB9 ALA B 311 LEU B 317 1 7 HELIX 19 AC1 SER B 345 GLY B 352 1 8 HELIX 20 AC2 GLU B 353 TYR B 357 5 5 HELIX 21 AC3 ARG B 359 MET B 380 1 22 HELIX 22 AC4 ARG B 388 ALA B 390 5 3 HELIX 23 AC5 GLU B 396 LEU B 398 5 3 HELIX 24 AC6 PRO B 425 THR B 429 5 5 HELIX 25 AC7 ALA B 430 GLY B 437 1 8 HELIX 26 AC8 THR B 440 THR B 457 1 18 HELIX 27 AC9 VAL B 467 ARG B 477 1 11 HELIX 28 AD1 PRO B 488 TRP B 499 1 12 HELIX 29 AD2 ASP B 502 ARG B 506 5 5 HELIX 30 AD3 THR B 508 ASP B 518 1 11 HELIX 31 AD4 ASP B 518 THR B 523 1 6 SHEET 1 AA1 5 LEU A 267 GLN A 275 0 SHEET 2 AA1 5 GLY A 279 TRP A 286 -1 O VAL A 281 N LEU A 273 SHEET 3 AA1 5 THR A 290 LEU A 297 -1 O ILE A 294 N TRP A 282 SHEET 4 AA1 5 ILE A 334 THR A 338 -1 O ILE A 336 N LYS A 295 SHEET 5 AA1 5 LEU A 325 VAL A 329 -1 N TYR A 326 O VAL A 337 SHEET 1 AA2 2 ILE A 392 VAL A 394 0 SHEET 2 AA2 2 CYS A 400 VAL A 402 -1 O LYS A 401 N LEU A 393 SHEET 1 AA3 5 LEU B 267 GLN B 275 0 SHEET 2 AA3 5 GLU B 280 TRP B 286 -1 O MET B 283 N VAL B 271 SHEET 3 AA3 5 THR B 290 THR B 296 -1 O THR B 296 N GLU B 280 SHEET 4 AA3 5 TYR B 335 GLU B 339 -1 O ILE B 336 N LYS B 295 SHEET 5 AA3 5 LEU B 325 VAL B 329 -1 N VAL B 329 O TYR B 335 SHEET 1 AA4 2 ILE B 392 VAL B 394 0 SHEET 2 AA4 2 CYS B 400 VAL B 402 -1 O LYS B 401 N LEU B 393 CISPEP 1 GLU A 332 PRO A 333 0 -6.38 CISPEP 2 GLU B 332 PRO B 333 0 3.12 SITE 1 AC1 12 ALA A 293 LYS A 295 VAL A 323 ILE A 336 SITE 2 AC1 12 THR A 338 GLU A 339 TYR A 340 MET A 341 SITE 3 AC1 12 SER A 342 GLY A 344 LEU A 393 ASP A 404 SITE 1 AC2 1 HOH A 701 SITE 1 AC3 4 PRO A 484 PRO A 485 GLU A 486 CYS A 487 SITE 1 AC4 5 LYS A 351 HOH A 720 TYR B 511 ALA B 514 SITE 2 AC4 5 PHE B 515 SITE 1 AC5 12 VAL B 281 ALA B 293 LYS B 295 MET B 314 SITE 2 AC5 12 ILE B 336 THR B 338 GLU B 339 MET B 341 SITE 3 AC5 12 SER B 342 GLY B 344 LEU B 393 ASP B 404 SITE 1 AC6 3 GLN B 497 ARG B 500 HOH B1180 SITE 1 AC7 6 GLY A 465 HOH A 764 GLU B 517 ASP B 518 SITE 2 AC7 6 HOH B1144 HOH B1163 SITE 1 AC8 6 GLU A 517 ASP A 518 LYS B 427 PRO B 464 SITE 2 AC8 6 GLY B 465 HOH B1141 SITE 1 AC9 2 GLN B 362 ARG B 438 CRYST1 42.260 63.420 74.930 101.72 90.90 90.01 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023663 0.000003 0.000378 0.00000 SCALE2 0.000000 0.015768 0.003272 0.00000 SCALE3 0.000000 0.000000 0.013632 0.00000