HEADER CELL INVASION 01-OCT-20 7AKI TITLE ENAH EVH1 IN COMPLEX WITH AC-[2-CL-F]-[PROM-2]-[PROM-1]-NH2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ENABLED HOMOLOG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: M1A Q11A K21A ARE MUTATED FOR MODELLING AS ONLY THE COMPND 6 BACKBONE WAS VISIBLE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ENAH, MENA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-4T-1 KEYWDS PROLINE-RICH MOTIF, ENA/VASP INHIBITOR, ACTIN, PROTEIN-PROTEIN KEYWDS 2 INTERACTION, CELL INVASION EXPDTA X-RAY DIFFRACTION AUTHOR M.BARONE,Y.ROSKE REVDAT 6 31-JAN-24 7AKI 1 REMARK REVDAT 5 26-OCT-22 7AKI 1 JRNL REMARK REVDAT 4 17-FEB-21 7AKI 1 JRNL REVDAT 3 10-FEB-21 7AKI 1 JRNL REVDAT 2 02-DEC-20 7AKI 1 JRNL REVDAT 1 25-NOV-20 7AKI 0 JRNL AUTH M.BARONE,M.MULLER,S.CHIHA,J.REN,D.ALBAT,A.SOICKE,S.DOHMEN, JRNL AUTH 2 M.KLEIN,J.BRUNS,M.VAN DINTHER,R.OPITZ,P.LINDEMANN, JRNL AUTH 3 M.BEERBAUM,K.MOTZNY,Y.ROSKE,P.SCHMIEDER,R.VOLKMER,M.NAZARE, JRNL AUTH 4 U.HEINEMANN,H.OSCHKINAT,P.TEN DIJKE,H.G.SCHMALZ,R.KUHNE JRNL TITL DESIGNED NANOMOLAR SMALL-MOLECULE INHIBITORS OF ENA/VASP JRNL TITL 2 EVH1 INTERACTION IMPAIR INVASION AND EXTRAVASATION OF BREAST JRNL TITL 3 CANCER CELLS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 117 29684 2020 JRNL REFN ESSN 1091-6490 JRNL PMID 33184177 JRNL DOI 10.1073/PNAS.2007213117 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH R.OPITZ,M.MULLER,C.REUTER,M.BARONE,A.SOICKE,Y.ROSKE, REMARK 1 AUTH 2 K.PIOTUKH,P.HUY,M.BEERBAUM,B.WIESNER,M.BEYERMANN, REMARK 1 AUTH 3 P.SCHMIEDER,C.FREUND,R.VOLKMER,H.OSCHKINAT,H.G.SCHMALZ, REMARK 1 AUTH 4 R.KUHNE REMARK 1 TITL A MODULAR TOOLKIT TO INHIBIT PROLINE-RICH MOTIF-MEDIATED REMARK 1 TITL 2 PROTEIN-PROTEIN INTERACTIONS. REMARK 1 REF PROC. NATL. ACAD. SCI. V. 112 5011 2015 REMARK 1 REF 2 U.S.A. REMARK 1 REFN ESSN 1091-6490 REMARK 1 DOI 10.1073/PNAS.1422054112 REMARK 2 REMARK 2 RESOLUTION. 1.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1_3660 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.5300 - 2.6000 1.00 2949 156 0.1759 0.2179 REMARK 3 2 2.6000 - 2.0600 1.00 2801 147 0.1979 0.2156 REMARK 3 3 2.0600 - 1.8000 1.00 2805 148 0.1915 0.2212 REMARK 3 4 1.8000 - 1.6400 1.00 2776 146 0.2230 0.2841 REMARK 3 5 1.6400 - 1.5200 1.00 2749 145 0.2905 0.3587 REMARK 3 6 1.5200 - 1.4300 1.00 2771 145 0.3389 0.3474 REMARK 3 7 1.4300 - 1.3600 1.00 2755 146 0.4480 0.3990 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.256 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 1112 REMARK 3 ANGLE : 1.644 1539 REMARK 3 CHIRALITY : 0.085 160 REMARK 3 PLANARITY : 0.008 201 REMARK 3 DIHEDRAL : 14.771 462 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0791 8.1102 9.7654 REMARK 3 T TENSOR REMARK 3 T11: 0.2295 T22: 0.1799 REMARK 3 T33: 0.2048 T12: -0.0074 REMARK 3 T13: 0.0136 T23: 0.0151 REMARK 3 L TENSOR REMARK 3 L11: 1.7071 L22: 1.5631 REMARK 3 L33: 2.2922 L12: -0.4176 REMARK 3 L13: 0.4195 L23: 1.6934 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: -0.1166 S13: -0.1151 REMARK 3 S21: 0.2687 S22: -0.0088 S23: 0.0821 REMARK 3 S31: 0.5092 S32: 0.0710 S33: -0.0498 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 18 THROUGH 32 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.6314 18.2202 19.3336 REMARK 3 T TENSOR REMARK 3 T11: 0.1841 T22: 0.2927 REMARK 3 T33: 0.2340 T12: 0.0282 REMARK 3 T13: -0.0463 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 5.4874 L22: 4.3280 REMARK 3 L33: 2.0625 L12: -0.6215 REMARK 3 L13: 0.2268 L23: 2.9319 REMARK 3 S TENSOR REMARK 3 S11: -0.1322 S12: -0.5367 S13: 0.4884 REMARK 3 S21: 0.0314 S22: 0.0594 S23: -0.1496 REMARK 3 S31: -0.2542 S32: -0.0989 S33: 0.0802 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 52 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.6114 1.2817 9.1052 REMARK 3 T TENSOR REMARK 3 T11: 0.2524 T22: 0.1861 REMARK 3 T33: 0.1939 T12: 0.0209 REMARK 3 T13: 0.0410 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 5.8970 L22: 5.8683 REMARK 3 L33: 3.5855 L12: 3.3807 REMARK 3 L13: 1.6866 L23: 1.2235 REMARK 3 S TENSOR REMARK 3 S11: -0.2897 S12: -0.1948 S13: -0.5662 REMARK 3 S21: -0.2253 S22: 0.1432 S23: -0.1409 REMARK 3 S31: 0.5621 S32: -0.1258 S33: 0.1439 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 53 THROUGH 63 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.6502 6.1459 13.0743 REMARK 3 T TENSOR REMARK 3 T11: 0.2420 T22: 0.2859 REMARK 3 T33: 0.2041 T12: 0.0279 REMARK 3 T13: -0.0109 T23: 0.0154 REMARK 3 L TENSOR REMARK 3 L11: 2.3512 L22: 4.1084 REMARK 3 L33: 3.0716 L12: -0.9118 REMARK 3 L13: -2.0967 L23: 0.0570 REMARK 3 S TENSOR REMARK 3 S11: 0.2967 S12: -0.0342 S13: 0.3705 REMARK 3 S21: 0.1308 S22: -0.1808 S23: -0.4425 REMARK 3 S31: 0.1965 S32: 0.3879 S33: 0.0419 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 64 THROUGH 93 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5166 13.3395 13.1656 REMARK 3 T TENSOR REMARK 3 T11: 0.0997 T22: 0.1550 REMARK 3 T33: 0.1501 T12: 0.0107 REMARK 3 T13: -0.0050 T23: -0.0312 REMARK 3 L TENSOR REMARK 3 L11: 5.0302 L22: 3.5859 REMARK 3 L33: 6.2568 L12: 1.4478 REMARK 3 L13: -2.5209 L23: -2.1937 REMARK 3 S TENSOR REMARK 3 S11: -0.0099 S12: -0.0703 S13: 0.0306 REMARK 3 S21: -0.0279 S22: -0.0380 S23: 0.1389 REMARK 3 S31: -0.0908 S32: -0.1995 S33: -0.0445 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 94 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3903 9.2476 3.7337 REMARK 3 T TENSOR REMARK 3 T11: 0.2996 T22: 0.3423 REMARK 3 T33: 0.3403 T12: -0.0148 REMARK 3 T13: 0.0197 T23: -0.0497 REMARK 3 L TENSOR REMARK 3 L11: 4.8857 L22: 4.3765 REMARK 3 L33: 4.0733 L12: 4.0663 REMARK 3 L13: -4.3451 L23: -4.0659 REMARK 3 S TENSOR REMARK 3 S11: -0.2915 S12: 0.6332 S13: -0.4316 REMARK 3 S21: 0.0341 S22: 0.1336 S23: 0.5154 REMARK 3 S31: 0.1944 S32: -0.8458 S33: 0.0738 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AKI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 01-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20643 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.360 REMARK 200 RESOLUTION RANGE LOW (A) : 44.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.36 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5N91 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 33.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.541M AMMONIUM SULFATE, 564MM REMARK 280 POTASSIUM BROMIDE, PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 300.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.53000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.53000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 17.35000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 30.34500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 17.35000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 30.34500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.53000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 17.35000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 30.34500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.53000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 17.35000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 30.34500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 357 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 359 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 GLN A 8 CG CD OE1 NE2 REMARK 470 LYS A 21 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS A 22 O HOH A 301 1.29 REMARK 500 HZ3 LYS A 22 O HOH A 301 1.33 REMARK 500 HH21 ARG A 10 O2 NO3 A 201 1.56 REMARK 500 NZ LYS A 22 O HOH A 301 1.57 REMARK 500 O LEU A 111 O HOH A 302 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 362 O HOH A 362 4555 1.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 7 145.63 -170.04 REMARK 500 ASN A 61 88.10 -152.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ARG A 81 ASP A 82 144.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 301 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NO3 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RJQ A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RJQ A 203 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4MY6 RELATED DB: PDB REMARK 900 SAME INHIBITOR COMPOSITION BUT WITH AMIDATED C-TERMINUS DBREF 7AKI A 1 111 UNP Q8N8S7 ENAH_HUMAN 1 111 SEQADV 7AKI GLY A -1 UNP Q8N8S7 EXPRESSION TAG SEQADV 7AKI SER A 0 UNP Q8N8S7 EXPRESSION TAG SEQRES 1 A 113 GLY SER MET SER GLU GLN SER ILE CYS GLN ALA ARG ALA SEQRES 2 A 113 ALA VAL MET VAL TYR ASP ASP ALA ASN LYS LYS TRP VAL SEQRES 3 A 113 PRO ALA GLY GLY SER THR GLY PHE SER ARG VAL HIS ILE SEQRES 4 A 113 TYR HIS HIS THR GLY ASN ASN THR PHE ARG VAL VAL GLY SEQRES 5 A 113 ARG LYS ILE GLN ASP HIS GLN VAL VAL ILE ASN CYS ALA SEQRES 6 A 113 ILE PRO LYS GLY LEU LYS TYR ASN GLN ALA THR GLN THR SEQRES 7 A 113 PHE HIS GLN TRP ARG ASP ALA ARG GLN VAL TYR GLY LEU SEQRES 8 A 113 ASN PHE GLY SER LYS GLU ASP ALA ASN VAL PHE ALA SER SEQRES 9 A 113 ALA MET MET HIS ALA LEU GLU VAL LEU HET NO3 A 201 4 HET RJQ A 202 89 HET RJQ A 203 178 HETNAM NO3 NITRATE ION HETNAM RJQ (3~{S},7~{R},10~{R},13~{S})-4-[(3~{S},6~{R},8~{A}~{S})- HETNAM 2 RJQ 1'-[(2~{S})-2-ACETAMIDO-3-(2-CHLOROPHENYL)PROPANOYL]- HETNAM 3 RJQ 5-OXIDANYLIDENE-SPIRO[1,2,3,8~{A}- HETNAM 4 RJQ TETRAHYDROINDOLIZINE-6,2'-PYRROLIDINE]-3-YL]CARBONYL- HETNAM 5 RJQ 2-OXIDANYLIDENE-1,4-DIAZATRICYCLO[8.3.0.0^{3, HETNAM 6 RJQ 7}]TRIDEC-8-ENE-13-CARBOXAMIDE FORMUL 2 NO3 N O3 1- FORMUL 3 RJQ 2(C35 H41 CL N6 O6) FORMUL 5 HOH *62(H2 O) HELIX 1 AA1 GLY A 27 SER A 29 5 3 HELIX 2 AA2 SER A 93 LEU A 111 1 19 SHEET 1 AA1 5 LYS A 22 PRO A 25 0 SHEET 2 AA1 5 GLU A 3 ASP A 17 -1 N ASP A 17 O LYS A 22 SHEET 3 AA1 5 PHE A 32 HIS A 40 -1 O VAL A 35 N ALA A 9 SHEET 4 AA1 5 THR A 45 LYS A 52 -1 O ARG A 47 N TYR A 38 SHEET 5 AA1 5 VAL A 58 ILE A 64 -1 O CYS A 62 N VAL A 48 SHEET 1 AA2 5 LYS A 22 PRO A 25 0 SHEET 2 AA2 5 GLU A 3 ASP A 17 -1 N ASP A 17 O LYS A 22 SHEET 3 AA2 5 VAL A 86 PHE A 91 -1 O GLY A 88 N MET A 14 SHEET 4 AA2 5 PHE A 77 ARG A 81 -1 N TRP A 80 O TYR A 87 SHEET 5 AA2 5 ASN A 71 GLN A 72 -1 N ASN A 71 O GLN A 79 SITE 1 AC1 5 ARG A 10 PHE A 32 ILE A 53 GLU A 95 SITE 2 AC1 5 ASN A 98 SITE 1 AC2 10 TYR A 16 ASP A 18 LYS A 22 TRP A 23 SITE 2 AC2 10 LYS A 66 ASN A 71 GLN A 79 ARG A 81 SITE 3 AC2 10 VAL A 86 HOH A 334 SITE 1 AC3 14 GLY A -1 SER A 0 GLU A 3 GLN A 4 SITE 2 AC3 14 GLN A 8 ARG A 34 TYR A 38 ARG A 47 SITE 3 AC3 14 VAL A 58 ASN A 61 GLN A 72 ALA A 73 SITE 4 AC3 14 GLN A 75 HOH A 322 CRYST1 34.700 60.690 89.060 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028818 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016477 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011228 0.00000