HEADER VIRAL PROTEIN 06-OCT-20 7ALI TITLE CRYSTAL STRUCTURE OF THE MAIN PROTEASE (3CLPRO/MPRO) OF SARS-COV-2 AT TITLE 2 1.65A RESOLUTION (SPACEGROUP P2(1)). COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 5 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SARS-COV-2, MPRO, 3CLPRO, EXSCALATE4COV, DRUG DISCOVERY, ELETTRA, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.COSTANZI,N.DEMITRI,B.GIABBAI,A.HEROUX,P.STORICI REVDAT 3 31-JAN-24 7ALI 1 REMARK REVDAT 2 24-NOV-21 7ALI 1 COMPND SOURCE JRNL REVDAT 1 02-DEC-20 7ALI 0 JRNL AUTH E.COSTANZI,M.KUZIKOV,F.ESPOSITO,S.ALBANI,N.DEMITRI, JRNL AUTH 2 B.GIABBAI,M.CAMASTA,E.TRAMONTANO,G.ROSSETTI,A.ZALIANI, JRNL AUTH 3 P.STORICI JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE DUAL INHIBITION JRNL TITL 2 OF MG-132 AGAINST SARS-COV-2 MAIN PROTEASE (MPRO/3CLPRO) AND JRNL TITL 3 HUMAN CATHEPSIN-L. JRNL REF INT J MOL SCI V. 22 2021 JRNL REFN ESSN 1422-0067 JRNL PMID 34769210 JRNL DOI 10.3390/IJMS222111779 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17_3644 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 63083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.190 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 3142 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4600 - 4.6200 0.96 2778 151 0.1788 0.2017 REMARK 3 2 4.6200 - 3.6700 0.99 2812 118 0.1506 0.1572 REMARK 3 3 3.6700 - 3.2100 0.99 2792 118 0.1643 0.2041 REMARK 3 4 3.2100 - 2.9100 0.99 2764 159 0.1727 0.1855 REMARK 3 5 2.9100 - 2.7000 0.99 2773 117 0.1817 0.2238 REMARK 3 6 2.7000 - 2.5400 0.99 2756 156 0.1860 0.2040 REMARK 3 7 2.5400 - 2.4200 0.99 2728 154 0.1865 0.2204 REMARK 3 8 2.4200 - 2.3100 0.98 2770 129 0.1869 0.2334 REMARK 3 9 2.3100 - 2.2200 0.98 2682 157 0.1897 0.2388 REMARK 3 10 2.2200 - 2.1500 0.98 2716 135 0.1900 0.2306 REMARK 3 11 2.1500 - 2.0800 0.98 2744 153 0.1996 0.2366 REMARK 3 12 2.0800 - 2.0200 0.98 2733 130 0.2061 0.2201 REMARK 3 13 2.0200 - 1.9700 0.98 2701 146 0.2126 0.2162 REMARK 3 14 1.9700 - 1.9200 0.98 2717 139 0.2137 0.2821 REMARK 3 15 1.9200 - 1.8700 0.97 2709 143 0.2270 0.2821 REMARK 3 16 1.8700 - 1.8300 0.97 2649 178 0.2364 0.2940 REMARK 3 17 1.8300 - 1.8000 0.97 2660 146 0.2581 0.2532 REMARK 3 18 1.8000 - 1.7600 0.97 2697 156 0.2552 0.2385 REMARK 3 19 1.7600 - 1.7300 0.97 2667 146 0.2620 0.2810 REMARK 3 20 1.7300 - 1.7000 0.97 2684 138 0.2728 0.2843 REMARK 3 21 1.7000 - 1.6800 0.97 2693 132 0.2921 0.2771 REMARK 3 22 1.6800 - 1.6500 0.97 2716 141 0.3022 0.3256 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.181 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.894 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4879 REMARK 3 ANGLE : 0.849 6642 REMARK 3 CHIRALITY : 0.048 749 REMARK 3 PLANARITY : 0.006 866 REMARK 3 DIHEDRAL : 17.916 1760 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.8591 -9.7431 41.9068 REMARK 3 T TENSOR REMARK 3 T11: 0.1295 T22: 0.1508 REMARK 3 T33: 0.1490 T12: -0.0121 REMARK 3 T13: -0.0204 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 1.2352 L22: 2.1884 REMARK 3 L33: 1.5098 L12: 0.5814 REMARK 3 L13: -0.5263 L23: -0.3802 REMARK 3 S TENSOR REMARK 3 S11: -0.0247 S12: 0.0400 S13: -0.0329 REMARK 3 S21: -0.1172 S22: 0.0668 S23: -0.0144 REMARK 3 S31: 0.0292 S32: -0.0153 S33: -0.0266 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4709 8.3142 43.1083 REMARK 3 T TENSOR REMARK 3 T11: 0.1677 T22: 0.1788 REMARK 3 T33: 0.2095 T12: -0.0102 REMARK 3 T13: -0.0097 T23: -0.0454 REMARK 3 L TENSOR REMARK 3 L11: 1.9708 L22: 1.1570 REMARK 3 L33: 0.9993 L12: 1.3628 REMARK 3 L13: -0.8396 L23: -0.7707 REMARK 3 S TENSOR REMARK 3 S11: 0.2164 S12: -0.0853 S13: 0.3335 REMARK 3 S21: 0.0660 S22: -0.0327 S23: 0.2566 REMARK 3 S31: -0.1487 S32: 0.1730 S33: -0.1607 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 215 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8979 18.5784 41.3021 REMARK 3 T TENSOR REMARK 3 T11: 0.2308 T22: 0.2415 REMARK 3 T33: 0.2085 T12: -0.0731 REMARK 3 T13: -0.0209 T23: -0.0214 REMARK 3 L TENSOR REMARK 3 L11: 2.5747 L22: 1.9432 REMARK 3 L33: 2.0999 L12: -0.7453 REMARK 3 L13: 0.8550 L23: -0.1046 REMARK 3 S TENSOR REMARK 3 S11: -0.1713 S12: 0.0615 S13: 0.1725 REMARK 3 S21: 0.1353 S22: 0.0201 S23: -0.1777 REMARK 3 S31: -0.2838 S32: 0.2591 S33: 0.1221 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4417 7.6525 32.1664 REMARK 3 T TENSOR REMARK 3 T11: 0.2281 T22: 0.3707 REMARK 3 T33: 0.2485 T12: -0.0672 REMARK 3 T13: 0.0128 T23: -0.0869 REMARK 3 L TENSOR REMARK 3 L11: 2.6023 L22: 3.1727 REMARK 3 L33: 2.8055 L12: -0.5015 REMARK 3 L13: 0.6704 L23: 0.0292 REMARK 3 S TENSOR REMARK 3 S11: 0.0365 S12: 0.4814 S13: -0.3387 REMARK 3 S21: -0.2703 S22: -0.1206 S23: 0.1110 REMARK 3 S31: 0.2351 S32: 0.1591 S33: 0.1038 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8439 -8.4516 23.8376 REMARK 3 T TENSOR REMARK 3 T11: 0.2536 T22: 0.2222 REMARK 3 T33: 0.1986 T12: -0.0020 REMARK 3 T13: 0.0284 T23: 0.0309 REMARK 3 L TENSOR REMARK 3 L11: 1.8964 L22: 2.9172 REMARK 3 L33: 2.2178 L12: -1.7798 REMARK 3 L13: -0.4449 L23: 0.4998 REMARK 3 S TENSOR REMARK 3 S11: -0.1201 S12: 0.1286 S13: -0.0329 REMARK 3 S21: 0.3370 S22: -0.0622 S23: -0.2032 REMARK 3 S31: 0.3409 S32: 0.0480 S33: 0.1432 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 120 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8126 -14.4845 11.7817 REMARK 3 T TENSOR REMARK 3 T11: 0.3210 T22: 0.2258 REMARK 3 T33: 0.2779 T12: 0.0957 REMARK 3 T13: 0.0651 T23: 0.0350 REMARK 3 L TENSOR REMARK 3 L11: 1.3102 L22: 1.6757 REMARK 3 L33: 3.3492 L12: 1.2223 REMARK 3 L13: -1.9421 L23: -0.3983 REMARK 3 S TENSOR REMARK 3 S11: -0.3788 S12: -0.3164 S13: -0.5080 REMARK 3 S21: -0.0808 S22: -0.0191 S23: -0.3216 REMARK 3 S31: 0.6729 S32: 0.5136 S33: 0.2250 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 121 THROUGH 139 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3519 1.6146 17.9301 REMARK 3 T TENSOR REMARK 3 T11: 0.2370 T22: 0.2079 REMARK 3 T33: 0.2540 T12: 0.0255 REMARK 3 T13: 0.0240 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.0119 L22: 1.7353 REMARK 3 L33: 3.7068 L12: -0.0252 REMARK 3 L13: 0.3478 L23: -2.3289 REMARK 3 S TENSOR REMARK 3 S11: 0.1419 S12: 0.0188 S13: 0.1070 REMARK 3 S21: 0.0794 S22: -0.0913 S23: -0.0645 REMARK 3 S31: -0.1139 S32: 0.2974 S33: -0.1130 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 140 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.7513 0.7430 13.8344 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.1843 REMARK 3 T33: 0.1619 T12: -0.0151 REMARK 3 T13: -0.0179 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.9094 L22: 1.7645 REMARK 3 L33: 1.6219 L12: -1.1277 REMARK 3 L13: -1.0992 L23: 0.6443 REMARK 3 S TENSOR REMARK 3 S11: 0.0417 S12: -0.0117 S13: 0.0125 REMARK 3 S21: -0.0695 S22: -0.0189 S23: -0.0604 REMARK 3 S31: 0.0340 S32: 0.0691 S33: -0.0300 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 215 THROUGH 292 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.8746 17.4348 16.8846 REMARK 3 T TENSOR REMARK 3 T11: 0.2791 T22: 0.2700 REMARK 3 T33: 0.4122 T12: 0.0791 REMARK 3 T13: 0.0570 T23: 0.0446 REMARK 3 L TENSOR REMARK 3 L11: 3.2234 L22: 1.5778 REMARK 3 L33: 2.6798 L12: 1.2698 REMARK 3 L13: -0.5430 L23: -0.1921 REMARK 3 S TENSOR REMARK 3 S11: 0.1195 S12: 0.1494 S13: 0.9583 REMARK 3 S21: -0.0758 S22: 0.0760 S23: 0.3039 REMARK 3 S31: -0.5459 S32: -0.3947 S33: -0.1198 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 293 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.6140 -1.7263 22.4227 REMARK 3 T TENSOR REMARK 3 T11: 0.3423 T22: 0.4554 REMARK 3 T33: 0.4034 T12: -0.0213 REMARK 3 T13: 0.0011 T23: 0.1204 REMARK 3 L TENSOR REMARK 3 L11: 3.0551 L22: 7.2997 REMARK 3 L33: 1.9468 L12: 0.1586 REMARK 3 L13: -0.2489 L23: -2.2459 REMARK 3 S TENSOR REMARK 3 S11: -0.0087 S12: -0.7351 S13: -1.0023 REMARK 3 S21: -0.1789 S22: 0.1994 S23: 0.0302 REMARK 3 S31: 0.4506 S32: -0.5093 S33: -0.2635 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 1 THROUGH 109 OR REMARK 3 RESID 111 THROUGH 164 OR RESID 166 REMARK 3 THROUGH 253 OR RESID 255 THROUGH 287 OR REMARK 3 RESID 289 THROUGH 305)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 1 THROUGH 109 OR REMARK 3 RESID 111 THROUGH 164 OR RESID 166 REMARK 3 THROUGH 253 OR RESID 255 THROUGH 287 OR REMARK 3 RESID 289 THROUGH 305)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7ALI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 06-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI(111) DCM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63251 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 48.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.06900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6Y2E REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M NA ACETATE, 20% PEG 3350, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.84900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN B 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -133.61 52.21 REMARK 500 ASN A 51 67.17 -159.81 REMARK 500 ASN A 84 -122.72 53.42 REMARK 500 TYR A 154 -109.48 42.20 REMARK 500 ASP B 33 -133.29 51.55 REMARK 500 ASN B 51 67.22 -159.66 REMARK 500 ASN B 84 -122.02 53.26 REMARK 500 TYR B 154 -108.51 42.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 674 DISTANCE = 6.45 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7ALH RELATED DB: PDB DBREF 7ALI A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 DBREF 7ALI B 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN FORMUL 3 HOH *490(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 GLU A 47 ASN A 51 5 5 HELIX 4 AA4 ASN A 53 ARG A 60 1 8 HELIX 5 AA5 LYS A 61 HIS A 64 5 4 HELIX 6 AA6 ILE A 200 ASN A 214 1 15 HELIX 7 AA7 THR A 226 TYR A 237 1 12 HELIX 8 AA8 THR A 243 LEU A 250 1 8 HELIX 9 AA9 LEU A 250 GLY A 258 1 9 HELIX 10 AB1 ALA A 260 GLY A 275 1 16 HELIX 11 AB2 THR A 292 GLY A 302 1 11 HELIX 12 AB3 SER B 10 GLY B 15 1 6 HELIX 13 AB4 HIS B 41 CYS B 44 5 4 HELIX 14 AB5 GLU B 47 ASN B 51 5 5 HELIX 15 AB6 ASN B 53 ARG B 60 1 8 HELIX 16 AB7 LYS B 61 HIS B 64 5 4 HELIX 17 AB8 ILE B 200 ASN B 214 1 15 HELIX 18 AB9 THR B 226 TYR B 237 1 12 HELIX 19 AC1 THR B 243 LEU B 250 1 8 HELIX 20 AC2 LEU B 250 GLY B 258 1 9 HELIX 21 AC3 ALA B 260 GLY B 275 1 16 HELIX 22 AC4 THR B 292 GLY B 302 1 11 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O VAL A 35 N LEU A 32 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 5 LYS A 100 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 LYS A 100 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 PHE B 66 ALA B 70 -1 N ALA B 70 O VAL B 73 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O GLY B 29 N VAL B 18 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O VAL B 35 N LEU B 32 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N GLN B 83 O VAL B 86 SHEET 1 AA5 5 LYS B 100 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O TYR B 126 N VAL B 114 SHEET 1 AA6 3 LYS B 100 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 CRYST1 44.776 53.698 114.550 90.00 101.17 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022333 0.000000 0.004411 0.00000 SCALE2 0.000000 0.018623 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008898 0.00000