HEADER STRUCTURAL PROTEIN 07-OCT-20 7ALR
TITLE CRYSTAL STRUCTURE OF TD1-GATORBULIN1 COMPLEX
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: TUBULIN ALPHA-1B CHAIN;
COMPND 3 CHAIN: A;
COMPND 4 SYNONYM: ALPHA-TUBULIN UBIQUITOUS,TUBULIN K-ALPHA-1,TUBULIN ALPHA-
COMPND 5 UBIQUITOUS CHAIN;
COMPND 6 MOL_ID: 2;
COMPND 7 MOLECULE: TUBULIN BETA-3 CHAIN;
COMPND 8 CHAIN: B;
COMPND 9 MOL_ID: 3;
COMPND 10 MOLECULE: DESIGNED ANKYRIN REPEAT PROTEIN (DARPIN) D1;
COMPND 11 CHAIN: F;
COMPND 12 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS;
SOURCE 3 ORGANISM_COMMON: CATTLE;
SOURCE 4 ORGANISM_TAXID: 9913;
SOURCE 5 MOL_ID: 2;
SOURCE 6 ORGANISM_SCIENTIFIC: BOS TAURUS;
SOURCE 7 ORGANISM_COMMON: BOVINE;
SOURCE 8 ORGANISM_TAXID: 9913;
SOURCE 9 MOL_ID: 3;
SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;
SOURCE 11 ORGANISM_TAXID: 32630;
SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS TUBULIN, GATORBULIN, ANTITUMORAL, MICROTUBULE, STRUCTURAL PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR M.A.OLIVA,J.F.DIAZ
REVDAT 3 31-JAN-24 7ALR 1 REMARK
REVDAT 2 10-MAR-21 7ALR 1 JRNL
REVDAT 1 03-MAR-21 7ALR 0
JRNL AUTH S.MATTHEW,Q.Y.CHEN,R.RATNAYAKE,C.S.FERMAINTT,D.LUCENA-AGELL,
JRNL AUTH 2 F.BONATO,A.E.PROTA,S.T.LIM,X.WANG,J.F.DIAZ,A.L.RISINGER,
JRNL AUTH 3 V.J.PAUL,M.A.OLIVA,H.LUESCH
JRNL TITL GATORBULIN-1, A DISTINCT CYCLODEPSIPEPTIDE CHEMOTYPE,
JRNL TITL 2 TARGETS A SEVENTH TUBULIN PHARMACOLOGICAL SITE.
JRNL REF PROC.NATL.ACAD.SCI.USA V. 118 2021
JRNL REFN ESSN 1091-6490
JRNL PMID 33619102
JRNL DOI 10.1073/PNAS.2021847118
REMARK 2
REMARK 2 RESOLUTION. 1.93 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX 1.16_3549
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.21
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2
REMARK 3 NUMBER OF REFLECTIONS : 80966
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.170
REMARK 3 R VALUE (WORKING SET) : 0.168
REMARK 3 FREE R VALUE : 0.204
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030
REMARK 3 FREE R VALUE TEST SET COUNT : 4072
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 49.2080 - 5.9263 0.99 2732 149 0.1694 0.1860
REMARK 3 2 5.9263 - 4.7050 1.00 2707 149 0.1467 0.1748
REMARK 3 3 4.7050 - 4.1106 1.00 2680 149 0.1273 0.1500
REMARK 3 4 4.1106 - 3.7349 1.00 2696 137 0.1377 0.1813
REMARK 3 5 3.7349 - 3.4673 1.00 2690 114 0.1560 0.1764
REMARK 3 6 3.4673 - 3.2629 1.00 2684 141 0.1660 0.2081
REMARK 3 7 3.2629 - 3.0995 1.00 2692 124 0.1792 0.1929
REMARK 3 8 3.0995 - 2.9646 1.00 2656 148 0.1721 0.2247
REMARK 3 9 2.9646 - 2.8505 0.99 2660 148 0.1725 0.2111
REMARK 3 10 2.8505 - 2.7522 0.99 2625 152 0.1741 0.2250
REMARK 3 11 2.7522 - 2.6661 0.99 2648 148 0.1715 0.2072
REMARK 3 12 2.6661 - 2.5899 1.00 2658 135 0.1636 0.1872
REMARK 3 13 2.5899 - 2.5217 0.99 2661 141 0.1733 0.1991
REMARK 3 14 2.5217 - 2.4602 0.99 2652 143 0.1682 0.2193
REMARK 3 15 2.4602 - 2.4043 0.99 2633 148 0.1758 0.2193
REMARK 3 16 2.4043 - 2.3531 0.99 2644 151 0.1711 0.2184
REMARK 3 17 2.3531 - 2.3060 0.99 2639 133 0.1835 0.2455
REMARK 3 18 2.3060 - 2.2625 0.99 2660 136 0.1812 0.2073
REMARK 3 19 2.2625 - 2.2221 0.99 2651 119 0.1829 0.2411
REMARK 3 20 2.2221 - 2.1845 0.99 2652 128 0.1884 0.2097
REMARK 3 21 2.1845 - 2.1492 0.99 2646 136 0.1930 0.2341
REMARK 3 22 2.1492 - 2.1162 0.99 2652 129 0.1970 0.2658
REMARK 3 23 2.1162 - 2.0850 0.99 2590 167 0.2038 0.2504
REMARK 3 24 2.0850 - 2.0557 0.99 2610 154 0.2031 0.2635
REMARK 3 25 2.0557 - 2.0279 0.99 2608 116 0.2205 0.2697
REMARK 3 26 2.0279 - 2.0015 0.99 2656 161 0.2242 0.2937
REMARK 3 27 2.0015 - 1.9765 0.98 2629 127 0.2345 0.3234
REMARK 3 28 1.9765 - 1.9527 0.98 2605 134 0.2427 0.3067
REMARK 3 29 1.9527 - 1.9300 0.98 2578 155 0.2656 0.3203
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.140
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.06
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : NULL NULL
REMARK 3 ANGLE : NULL NULL
REMARK 3 CHIRALITY : NULL NULL
REMARK 3 PLANARITY : NULL NULL
REMARK 3 DIHEDRAL : NULL NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : NULL
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7ALR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-20.
REMARK 100 THE DEPOSITION ID IS D_1292111615.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 17-JUL-20
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALBA
REMARK 200 BEAMLINE : XALOC
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97926
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81042
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930
REMARK 200 RESOLUTION RANGE LOW (A) : 49.210
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4
REMARK 200 DATA REDUNDANCY : 4.900
REMARK 200 R MERGE (I) : 0.06400
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.1000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97
REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8
REMARK 200 DATA REDUNDANCY IN SHELL : 5.00
REMARK 200 R MERGE FOR SHELL (I) : 0.49400
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 5NM5
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 46.54
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS-TRIS METHANE PH 5.5, 0.20
REMARK 280 AMMONIUM SULFATE, 18-22% PEG 3350, VAPOR DIFFUSION, HANGING DROP,
REMARK 280 TEMPERATURE 293.15K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.64600
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 7760 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 36620 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -65.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, F
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A 1
REMARK 465 ASP A 39
REMARK 465 LYS A 40
REMARK 465 THR A 41
REMARK 465 ILE A 42
REMARK 465 GLY A 43
REMARK 465 GLY A 44
REMARK 465 GLY A 45
REMARK 465 ASP A 46
REMARK 465 THR A 349
REMARK 465 GLY A 436
REMARK 465 VAL A 437
REMARK 465 ASP A 438
REMARK 465 SER A 439
REMARK 465 VAL A 440
REMARK 465 GLU A 441
REMARK 465 GLY A 442
REMARK 465 GLU A 443
REMARK 465 GLY A 444
REMARK 465 GLU A 445
REMARK 465 GLU A 446
REMARK 465 GLU A 447
REMARK 465 GLY A 448
REMARK 465 GLU A 449
REMARK 465 GLU A 450
REMARK 465 TYR A 451
REMARK 465 MET B 1
REMARK 465 GLN B 282
REMARK 465 TYR B 283
REMARK 465 GLU B 442
REMARK 465 GLU B 443
REMARK 465 GLY B 444
REMARK 465 GLU B 445
REMARK 465 MET B 446
REMARK 465 TYR B 447
REMARK 465 GLU B 448
REMARK 465 ASP B 449
REMARK 465 ASP B 450
REMARK 465 GLU B 451
REMARK 465 GLU B 452
REMARK 465 GLU B 453
REMARK 465 SER B 454
REMARK 465 GLU B 455
REMARK 465 ALA B 456
REMARK 465 GLN B 457
REMARK 465 GLY B 458
REMARK 465 PRO B 459
REMARK 465 LYS B 460
REMARK 465 MET F -10
REMARK 465 LYS F -9
REMARK 465 LYS F -8
REMARK 465 ASN F -7
REMARK 465 HIS F -6
REMARK 465 HIS F -5
REMARK 465 HIS F -4
REMARK 465 HIS F -3
REMARK 465 HIS F -2
REMARK 465 HIS F -1
REMARK 465 GLY F 0
REMARK 465 SER F 1
REMARK 465 GLY F 2
REMARK 465 LEU F 3
REMARK 465 GLU F 4
REMARK 465 VAL F 5
REMARK 465 LEU F 6
REMARK 465 PHE F 7
REMARK 465 GLN F 8
REMARK 465 GLY F 9
REMARK 465 PRO F 10
REMARK 465 GLY F 11
REMARK 465 SER F 12
REMARK 465 LEU F 168
REMARK 465 ASN F 169
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 HZ3 LYS A 60 O HOH A 603 1.58
REMARK 500 OD2 ASP B 251 O HOH B 601 2.15
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 ASP A 98 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 THR A 109 -75.04 -92.43
REMARK 500 ASP A 245 96.42 -67.69
REMARK 500 LYS A 280 67.83 -103.41
REMARK 500 PHE A 404 -2.19 68.14
REMARK 500 SER B 58 53.83 72.24
REMARK 500 THR B 109 -101.59 -110.55
REMARK 500 CYS B 131 87.55 -156.52
REMARK 500 ASP F 44 -168.38 -79.16
REMARK 500
REMARK 500 REMARK: NULL
REMARK 525
REMARK 525 SOLVENT
REMARK 525
REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT
REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST
REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT
REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE
REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER;
REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE
REMARK 525 NUMBER; I=INSERTION CODE):
REMARK 525
REMARK 525 M RES CSSEQI
REMARK 525 HOH F 679 DISTANCE = 5.92 ANGSTROMS
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 GLY A 501
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 503 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GTP A 502 O1G
REMARK 620 2 GTP A 502 O2B 87.4
REMARK 620 3 HOH A 619 O 90.9 87.5
REMARK 620 4 HOH A 626 O 175.1 95.3 85.1
REMARK 620 5 HOH A 693 O 86.8 171.7 98.5 90.9
REMARK 620 6 HOH A 733 O 87.6 87.1 174.5 96.6 86.7
REMARK 620 N 1 2 3 4 5
DBREF 7ALR A 1 451 UNP P81947 TBA1B_BOVIN 1 451
DBREF 7ALR B 1 460 UNP Q2T9S0 TBB3_BOVIN 1 450
DBREF 7ALR F -10 169 PDB 7ALR 7ALR -10 169
SEQRES 1 A 451 MET ARG GLU CYS ILE SER ILE HIS VAL GLY GLN ALA GLY
SEQRES 2 A 451 VAL GLN ILE GLY ASN ALA CYS TRP GLU LEU TYR CYS LEU
SEQRES 3 A 451 GLU HIS GLY ILE GLN PRO ASP GLY GLN MET PRO SER ASP
SEQRES 4 A 451 LYS THR ILE GLY GLY GLY ASP ASP SER PHE ASN THR PHE
SEQRES 5 A 451 PHE SER GLU THR GLY ALA GLY LYS HIS VAL PRO ARG ALA
SEQRES 6 A 451 VAL PHE VAL ASP LEU GLU PRO THR VAL ILE ASP GLU VAL
SEQRES 7 A 451 ARG THR GLY THR TYR ARG GLN LEU PHE HIS PRO GLU GLN
SEQRES 8 A 451 LEU ILE THR GLY LYS GLU ASP ALA ALA ASN ASN TYR ALA
SEQRES 9 A 451 ARG GLY HIS TYR THR ILE GLY LYS GLU ILE ILE ASP LEU
SEQRES 10 A 451 VAL LEU ASP ARG ILE ARG LYS LEU ALA ASP GLN CYS THR
SEQRES 11 A 451 GLY LEU GLN GLY PHE LEU VAL PHE HIS SER PHE GLY GLY
SEQRES 12 A 451 GLY THR GLY SER GLY PHE THR SER LEU LEU MET GLU ARG
SEQRES 13 A 451 LEU SER VAL ASP TYR GLY LYS LYS SER LYS LEU GLU PHE
SEQRES 14 A 451 SER ILE TYR PRO ALA PRO GLN VAL SER THR ALA VAL VAL
SEQRES 15 A 451 GLU PRO TYR ASN SER ILE LEU THR THR HIS THR THR LEU
SEQRES 16 A 451 GLU HIS SER ASP CYS ALA PHE MET VAL ASP ASN GLU ALA
SEQRES 17 A 451 ILE TYR ASP ILE CYS ARG ARG ASN LEU ASP ILE GLU ARG
SEQRES 18 A 451 PRO THR TYR THR ASN LEU ASN ARG LEU ILE SER GLN ILE
SEQRES 19 A 451 VAL SER SER ILE THR ALA SER LEU ARG PHE ASP GLY ALA
SEQRES 20 A 451 LEU ASN VAL ASP LEU THR GLU PHE GLN THR ASN LEU VAL
SEQRES 21 A 451 PRO TYR PRO ARG ILE HIS PHE PRO LEU ALA THR TYR ALA
SEQRES 22 A 451 PRO VAL ILE SER ALA GLU LYS ALA TYR HIS GLU GLN LEU
SEQRES 23 A 451 SER VAL ALA GLU ILE THR ASN ALA CYS PHE GLU PRO ALA
SEQRES 24 A 451 ASN GLN MET VAL LYS CYS ASP PRO ARG HIS GLY LYS TYR
SEQRES 25 A 451 MET ALA CYS CYS LEU LEU TYR ARG GLY ASP VAL VAL PRO
SEQRES 26 A 451 LYS ASP VAL ASN ALA ALA ILE ALA THR ILE LYS THR LYS
SEQRES 27 A 451 ARG SER ILE GLN PHE VAL ASP TRP CYS PRO THR GLY PHE
SEQRES 28 A 451 LYS VAL GLY ILE ASN TYR GLN PRO PRO THR VAL VAL PRO
SEQRES 29 A 451 GLY GLY ASP LEU ALA LYS VAL GLN ARG ALA VAL CYS MET
SEQRES 30 A 451 LEU SER ASN THR THR ALA ILE ALA GLU ALA TRP ALA ARG
SEQRES 31 A 451 LEU ASP HIS LYS PHE ASP LEU MET TYR ALA LYS ARG ALA
SEQRES 32 A 451 PHE VAL HIS TRP TYR VAL GLY GLU GLY MET GLU GLU GLY
SEQRES 33 A 451 GLU PHE SER GLU ALA ARG GLU ASP MET ALA ALA LEU GLU
SEQRES 34 A 451 LYS ASP TYR GLU GLU VAL GLY VAL ASP SER VAL GLU GLY
SEQRES 35 A 451 GLU GLY GLU GLU GLU GLY GLU GLU TYR
SEQRES 1 B 450 MET ARG GLU ILE VAL HIS ILE GLN ALA GLY GLN CYS GLY
SEQRES 2 B 450 ASN GLN ILE GLY ALA LYS PHE TRP GLU VAL ILE SER ASP
SEQRES 3 B 450 GLU HIS GLY ILE ASP PRO SER GLY ASN TYR VAL GLY ASP
SEQRES 4 B 450 SER ASP LEU GLN LEU GLU ARG ILE SER VAL TYR TYR ASN
SEQRES 5 B 450 GLU ALA SER SER HIS LYS TYR VAL PRO ARG ALA ILE LEU
SEQRES 6 B 450 VAL ASP LEU GLU PRO GLY THR MET ASP SER VAL ARG SER
SEQRES 7 B 450 GLY ALA PHE GLY HIS LEU PHE ARG PRO ASP ASN PHE ILE
SEQRES 8 B 450 PHE GLY GLN SER GLY ALA GLY ASN ASN TRP ALA LYS GLY
SEQRES 9 B 450 HIS TYR THR GLU GLY ALA GLU LEU VAL ASP SER VAL LEU
SEQRES 10 B 450 ASP VAL VAL ARG LYS GLU CYS GLU ASN CYS ASP CYS LEU
SEQRES 11 B 450 GLN GLY PHE GLN LEU THR HIS SER LEU GLY GLY GLY THR
SEQRES 12 B 450 GLY SER GLY MET GLY THR LEU LEU ILE SER LYS VAL ARG
SEQRES 13 B 450 GLU GLU TYR PRO ASP ARG ILE MET ASN THR PHE SER VAL
SEQRES 14 B 450 VAL PRO SER PRO LYS VAL SER ASP THR VAL VAL GLU PRO
SEQRES 15 B 450 TYR ASN ALA THR LEU SER ILE HIS GLN LEU VAL GLU ASN
SEQRES 16 B 450 THR ASP GLU THR TYR CYS ILE ASP ASN GLU ALA LEU TYR
SEQRES 17 B 450 ASP ILE CYS PHE ARG THR LEU LYS LEU ALA THR PRO THR
SEQRES 18 B 450 TYR GLY ASP LEU ASN HIS LEU VAL SER ALA THR MET SER
SEQRES 19 B 450 GLY VAL THR THR SER LEU ARG PHE PRO GLY GLN LEU ASN
SEQRES 20 B 450 ALA ASP LEU ARG LYS LEU ALA VAL ASN MET VAL PRO PHE
SEQRES 21 B 450 PRO ARG LEU HIS PHE PHE MET PRO GLY PHE ALA PRO LEU
SEQRES 22 B 450 THR ALA ARG GLY SER GLN GLN TYR ARG ALA LEU THR VAL
SEQRES 23 B 450 PRO GLU LEU THR GLN GLN MET PHE ASP ALA LYS ASN MET
SEQRES 24 B 450 MET ALA ALA CYS ASP PRO ARG HIS GLY ARG TYR LEU THR
SEQRES 25 B 450 VAL ALA THR VAL PHE ARG GLY ARG MET SER MET LYS GLU
SEQRES 26 B 450 VAL ASP GLU GLN MET LEU ALA ILE GLN SER LYS ASN SER
SEQRES 27 B 450 SER TYR PHE VAL GLU TRP ILE PRO ASN ASN VAL LYS VAL
SEQRES 28 B 450 ALA VAL CYS ASP ILE PRO PRO ARG GLY LEU LYS MET SER
SEQRES 29 B 450 SER THR PHE ILE GLY ASN SER THR ALA ILE GLN GLU LEU
SEQRES 30 B 450 PHE LYS ARG ILE SER GLU GLN PHE THR ALA MET PHE ARG
SEQRES 31 B 450 ARG LYS ALA PHE LEU HIS TRP TYR THR GLY GLU GLY MET
SEQRES 32 B 450 ASP GLU MET GLU PHE THR GLU ALA GLU SER ASN MET ASN
SEQRES 33 B 450 ASP LEU VAL SER GLU TYR GLN GLN TYR GLN ASP ALA THR
SEQRES 34 B 450 ALA GLU GLU GLU GLY GLU MET TYR GLU ASP ASP GLU GLU
SEQRES 35 B 450 GLU SER GLU ALA GLN GLY PRO LYS
SEQRES 1 F 180 MET LYS LYS ASN HIS HIS HIS HIS HIS HIS GLY SER GLY
SEQRES 2 F 180 LEU GLU VAL LEU PHE GLN GLY PRO GLY SER ASP LEU GLY
SEQRES 3 F 180 LYS LYS LEU LEU GLU ALA ALA ARG ALA GLY GLN ASP ASP
SEQRES 4 F 180 GLU VAL ARG ILE LEU MET ALA ASN GLY ALA ASP VAL ASN
SEQRES 5 F 180 ALA THR ASP ALA SER GLY LEU THR PRO LEU HIS LEU ALA
SEQRES 6 F 180 ALA THR TYR GLY HIS LEU GLU ILE VAL GLU VAL LEU LEU
SEQRES 7 F 180 LYS HIS GLY ALA ASP VAL ASN ALA ILE ASP ILE MET GLY
SEQRES 8 F 180 SER THR PRO LEU HIS LEU ALA ALA LEU ILE GLY HIS LEU
SEQRES 9 F 180 GLU ILE VAL GLU VAL LEU LEU LYS HIS GLY ALA ASP VAL
SEQRES 10 F 180 ASN ALA VAL ASP THR TRP GLY ASP THR PRO LEU HIS LEU
SEQRES 11 F 180 ALA ALA ILE MET GLY HIS LEU GLU ILE VAL GLU VAL LEU
SEQRES 12 F 180 LEU LYS HIS GLY ALA ASP VAL ASN ALA GLN ASP LYS PHE
SEQRES 13 F 180 GLY LYS THR ALA PHE ASP ILE SER ILE ASP ASN GLY ASN
SEQRES 14 F 180 GLU ASP LEU ALA GLU ILE LEU GLN LYS LEU ASN
HET GLY A 501 6
HET GTP A 502 41
HET MG A 503 1
HET RQK A 504 63
HET SO4 A 505 5
HET SO4 A 506 5
HET GDP B 500 38
HET GOL B 501 14
HET GOL B 502 14
HET GOL F 500 14
HETNAM GLY GLYCINE
HETNAM GTP GUANOSINE-5'-TRIPHOSPHATE
HETNAM MG MAGNESIUM ION
HETNAM RQK (2~{R})-2-OXIDANYL-2-[(6~{S},9~{S},12~{S},15~{S},
HETNAM 2 RQK 17~{S})-6,10,12,17-TETRAMETHYL-3-METHYLIDENE-7-
HETNAM 3 RQK OXIDANYL-2,5,8,11,14-PENTAKIS(OXIDANYLIDENE)-13-OXA-1,
HETNAM 4 RQK 4,7,10-TETRAZABICYCLO[13.3.0]OCTADECAN-9-YL]ETHANAMIDE
HETNAM SO4 SULFATE ION
HETNAM GDP GUANOSINE-5'-DIPHOSPHATE
HETNAM GOL GLYCEROL
HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL
FORMUL 4 GLY C2 H5 N O2
FORMUL 5 GTP C10 H16 N5 O14 P3
FORMUL 6 MG MG 2+
FORMUL 7 RQK C20 H29 N5 O9
FORMUL 8 SO4 2(O4 S 2-)
FORMUL 10 GDP C10 H15 N5 O11 P2
FORMUL 11 GOL 3(C3 H8 O3)
FORMUL 14 HOH *384(H2 O)
HELIX 1 AA1 GLY A 10 HIS A 28 1 19
HELIX 2 AA2 ASP A 47 THR A 51 5 5
HELIX 3 AA3 PRO A 72 GLY A 81 1 10
HELIX 4 AA4 HIS A 88 GLU A 90 5 3
HELIX 5 AA5 ASN A 102 TYR A 108 1 7
HELIX 6 AA6 THR A 109 GLU A 113 5 5
HELIX 7 AA7 ILE A 114 GLN A 128 1 15
HELIX 8 AA8 GLY A 143 TYR A 161 1 19
HELIX 9 AA9 ALA A 174 SER A 178 5 5
HELIX 10 AB1 VAL A 182 LEU A 195 1 14
HELIX 11 AB2 GLU A 196 SER A 198 5 3
HELIX 12 AB3 ASN A 206 LEU A 217 1 12
HELIX 13 AB4 THR A 223 PHE A 244 1 22
HELIX 14 AB5 ASP A 251 VAL A 260 1 10
HELIX 15 AB6 SER A 287 CYS A 295 1 9
HELIX 16 AB7 PHE A 296 GLN A 301 5 6
HELIX 17 AB8 ASP A 306 GLY A 310 5 5
HELIX 18 AB9 VAL A 324 THR A 337 1 14
HELIX 19 AC1 ILE A 384 ALA A 400 1 17
HELIX 20 AC2 PHE A 404 GLY A 410 1 7
HELIX 21 AC3 GLU A 415 VAL A 435 1 21
HELIX 22 AC4 GLY B 10 GLY B 29 1 20
HELIX 23 AC5 ASP B 41 ARG B 48 1 6
HELIX 24 AC6 ILE B 49 VAL B 51 5 3
HELIX 25 AC7 PRO B 72 GLY B 81 1 10
HELIX 26 AC8 ARG B 88 ASP B 90 5 3
HELIX 27 AC9 ASN B 102 THR B 109 1 8
HELIX 28 AD1 THR B 109 ASN B 128 1 20
HELIX 29 AD2 GLY B 144 TYR B 161 1 18
HELIX 30 AD3 VAL B 182 THR B 198 1 17
HELIX 31 AD4 ASN B 206 THR B 216 1 11
HELIX 32 AD5 THR B 223 PHE B 244 1 22
HELIX 33 AD6 ASP B 251 VAL B 260 1 10
HELIX 34 AD7 THR B 287 ASP B 297 1 11
HELIX 35 AD8 ALA B 298 MET B 301 5 4
HELIX 36 AD9 ASP B 306 GLY B 310 5 5
HELIX 37 AE1 SER B 324 ASN B 339 1 16
HELIX 38 AE2 SER B 340 PHE B 343 5 4
HELIX 39 AE3 ILE B 384 ARG B 401 1 18
HELIX 40 AE4 LEU B 405 GLY B 410 1 6
HELIX 41 AE5 ASP B 414 ALA B 438 1 25
HELIX 42 AE6 LEU F 14 GLY F 25 1 12
HELIX 43 AE7 GLN F 26 ASN F 36 1 11
HELIX 44 AE8 THR F 49 GLY F 58 1 10
HELIX 45 AE9 HIS F 59 HIS F 69 1 11
HELIX 46 AF1 THR F 82 GLY F 91 1 10
HELIX 47 AF2 HIS F 92 HIS F 102 1 11
HELIX 48 AF3 THR F 115 MET F 123 1 9
HELIX 49 AF4 HIS F 125 HIS F 135 1 11
HELIX 50 AF5 THR F 148 ASN F 156 1 9
HELIX 51 AF6 ASN F 158 LYS F 167 1 10
SHEET 1 AA1 6 LEU A 92 THR A 94 0
SHEET 2 AA1 6 ALA A 65 ASP A 69 1 N PHE A 67 O ILE A 93
SHEET 3 AA1 6 CYS A 4 VAL A 9 1 N HIS A 8 O VAL A 68
SHEET 4 AA1 6 GLY A 134 SER A 140 1 O LEU A 136 N ILE A 7
SHEET 5 AA1 6 SER A 165 TYR A 172 1 O LEU A 167 N VAL A 137
SHEET 6 AA1 6 CYS A 200 ASP A 205 1 O PHE A 202 N GLU A 168
SHEET 1 AA2 2 PHE A 53 GLU A 55 0
SHEET 2 AA2 2 HIS A 61 PRO A 63 -1 O VAL A 62 N SER A 54
SHEET 1 AA3 4 LEU A 269 ALA A 273 0
SHEET 2 AA3 4 ARG A 373 THR A 381 -1 O SER A 379 N LEU A 269
SHEET 3 AA3 4 TYR A 312 GLY A 321 -1 N MET A 313 O ASN A 380
SHEET 4 AA3 4 LYS A 352 ASN A 356 1 O GLY A 354 N TYR A 319
SHEET 1 AA410 PHE B 92 PHE B 94 0
SHEET 2 AA410 ALA B 65 ASP B 69 1 N LEU B 67 O ILE B 93
SHEET 3 AA410 GLU B 3 ALA B 9 1 N GLN B 8 O VAL B 68
SHEET 4 AA410 LEU B 132 SER B 140 1 O GLN B 133 N GLU B 3
SHEET 5 AA410 ILE B 165 VAL B 172 1 O ILE B 165 N PHE B 135
SHEET 6 AA410 GLU B 200 ASP B 205 1 O TYR B 202 N THR B 168
SHEET 7 AA410 PHE B 267 ALA B 273 1 O PHE B 268 N THR B 201
SHEET 8 AA410 SER B 374 SER B 381 -1 O PHE B 377 N GLY B 271
SHEET 9 AA410 TYR B 312 ARG B 320 -1 N ARG B 320 O SER B 374
SHEET 10 AA410 VAL B 351 CYS B 356 1 O CYS B 356 N PHE B 319
SHEET 1 AA5 2 TYR B 53 GLU B 55 0
SHEET 2 AA5 2 TYR B 61 PRO B 63 -1 O VAL B 62 N ASN B 54
LINK O1G GTP A 502 MG MG A 503 1555 1555 2.21
LINK O2B GTP A 502 MG MG A 503 1555 1555 2.13
LINK MG MG A 503 O HOH A 619 1555 1555 2.07
LINK MG MG A 503 O HOH A 626 1555 1555 2.10
LINK MG MG A 503 O HOH A 693 1555 1555 2.15
LINK MG MG A 503 O HOH A 733 1555 1555 2.14
CISPEP 1 ALA A 273 PRO A 274 0 -1.44
CISPEP 2 ALA B 273 PRO B 274 0 -6.53
CRYST1 73.462 91.292 82.970 90.00 97.44 90.00 P 1 21 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.013612 0.000000 0.001777 0.00000
SCALE2 0.000000 0.010954 0.000000 0.00000
SCALE3 0.000000 0.000000 0.012155 0.00000