HEADER IMMUNE SYSTEM 07-OCT-20 7ALV
TITLE CRYSTAL STRUCTURE OF NLRP3 NACHT DOMAIN IN COMPLEX WITH A POTENT
TITLE 2 INHIBITOR
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 3;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: NACHT DOMAIN;
COMPND 5 SYNONYM: ANGIOTENSIN/VASOPRESSIN RECEPTOR AII/AVP-LIKE,CATERPILLER
COMPND 6 PROTEIN 1.1,CLR1.1,COLD-INDUCED AUTOINFLAMMATORY SYNDROME 1 PROTEIN,
COMPND 7 CRYOPYRIN,PYRIN-CONTAINING APAF1-LIKE PROTEIN 1;
COMPND 8 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: NLRP3, C1ORF7, CIAS1, NALP3, PYPAF1;
SOURCE 6 EXPRESSION_SYSTEM: UNIDENTIFIED BACULOVIRUS;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10469;
SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9
KEYWDS INFLAMMASOME, IMMUNE SYSTEM
EXPDTA X-RAY DIFFRACTION
AUTHOR C.DEKKER,A.HINNIGER
REVDAT 4 31-JAN-24 7ALV 1 REMARK
REVDAT 3 17-NOV-21 7ALV 1 JRNL
REVDAT 2 03-NOV-21 7ALV 1 JRNL
REVDAT 1 20-OCT-21 7ALV 0
JRNL AUTH C.DEKKER,H.MATTES,M.WRIGHT,A.BOETTCHER,A.HINNIGER,N.HUGHES,
JRNL AUTH 2 S.KAPPS-FOUTHIER,J.EDER,P.ERBEL,N.STIEFL,A.MACKAY,C.J.FARADY
JRNL TITL CRYSTAL STRUCTURE OF NLRP3 NACHT DOMAIN WITH AN INHIBITOR
JRNL TITL 2 DEFINES MECHANISM OF INFLAMMASOME INHIBITION.
JRNL REF J.MOL.BIOL. V. 433 67309 2021
JRNL REFN ESSN 1089-8638
JRNL PMID 34687713
JRNL DOI 10.1016/J.JMB.2021.167309
REMARK 2
REMARK 2 RESOLUTION. 2.84 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.11.7 (20-MAY-2020)
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 79.39
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 68.2
REMARK 3 NUMBER OF REFLECTIONS : 12189
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.215
REMARK 3 R VALUE (WORKING SET) : 0.213
REMARK 3 FREE R VALUE : 0.265
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.190
REMARK 3 FREE R VALUE TEST SET COUNT : 633
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : NULL
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.84
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.09
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 9.81
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : NULL
REMARK 3 BIN R VALUE (WORKING + TEST SET) : NULL
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 376
REMARK 3 BIN R VALUE (WORKING SET) : 0.2651
REMARK 3 BIN FREE R VALUE : 0.3899
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.57
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 18
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.000
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3718
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 56
REMARK 3 SOLVENT ATOMS : 8
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 88.23
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 83.37
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 1.45640
REMARK 3 B22 (A**2) : 1.45640
REMARK 3 B33 (A**2) : -2.91290
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.430
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.474
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.853
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 3864 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 5232 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 1315 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : NULL ; NULL ; NULL
REMARK 3 GENERAL PLANES : 650 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 3864 ; 10.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 503 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 2997 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.009
REMARK 3 BOND ANGLES (DEGREES) : 1.00
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.74
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 20.01
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): 14.3407 34.7814 133.9010
REMARK 3 T TENSOR
REMARK 3 T11: -0.2151 T22: -0.1823
REMARK 3 T33: -0.2008 T12: -0.0799
REMARK 3 T13: 0.0806 T23: -0.0272
REMARK 3 L TENSOR
REMARK 3 L11: 3.6413 L22: 1.9311
REMARK 3 L33: 5.8919 L12: -1.1572
REMARK 3 L13: -2.1833 L23: 2.3965
REMARK 3 S TENSOR
REMARK 3 S11: -0.2009 S12: -0.0349 S13: -0.3912
REMARK 3 S21: 0.1740 S22: -0.0394 S23: 0.0488
REMARK 3 S31: 0.6819 S32: 0.0951 S33: 0.2403
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 7ALV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-OCT-20.
REMARK 100 THE DEPOSITION ID IS D_1292111519.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 26-FEB-18
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 7.5
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : SLS
REMARK 200 BEAMLINE : X10SA
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.000
REMARK 200 MONOCHROMATOR : NULL
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : PIXEL
REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS
REMARK 200 DATA SCALING SOFTWARE : STARANISO
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12189
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.830
REMARK 200 RESOLUTION RANGE LOW (A) : 79.394
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 18.70
REMARK 200 R MERGE (I) : 0.25500
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 12.9000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.84
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15
REMARK 200 COMPLETENESS FOR SHELL (%) : 13.1
REMARK 200 DATA REDUNDANCY IN SHELL : 18.00
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: PDBID 5IRN, 4KXF
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 54.98
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.40
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES PH 7.5, 1.4M
REMARK 280 SODIUMCITRATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -Y,X-Y,Z+1/3
REMARK 290 3555 -X+Y,-X,Z+2/3
REMARK 290 4555 -X,-Y,Z+1/2
REMARK 290 5555 Y,-X+Y,Z+5/6
REMARK 290 6555 X-Y,X,Z+1/6
REMARK 290 7555 Y,X,-Z+1/3
REMARK 290 8555 X-Y,-Y,-Z
REMARK 290 9555 -X,-X+Y,-Z+2/3
REMARK 290 10555 -Y,-X,-Z+5/6
REMARK 290 11555 -X+Y,Y,-Z+1/2
REMARK 290 12555 X,X-Y,-Z+1/6
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.51333
REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 175.02667
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 131.27000
REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 218.78333
REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.75667
REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.51333
REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000
REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 175.02667
REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000
REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 218.78333
REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 131.27000
REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000
REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000
REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 43.75667
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 TOTAL BURIED SURFACE AREA: 740 ANGSTROM**2
REMARK 350 SURFACE AREA OF THE COMPLEX: 20670 ANGSTROM**2
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 130
REMARK 465 LYS A 131
REMARK 465 MET A 132
REMARK 465 LYS A 133
REMARK 465 ASP A 153
REMARK 465 ARG A 154
REMARK 465 ASN A 155
REMARK 465 ALA A 156
REMARK 465 ARG A 157
REMARK 465 LEU A 158
REMARK 465 GLY A 159
REMARK 465 GLU A 160
REMARK 465 SER A 161
REMARK 465 VAL A 162
REMARK 465 SER A 163
REMARK 465 ARG A 178
REMARK 465 SER A 179
REMARK 465 GLN A 180
REMARK 465 GLN A 181
REMARK 465 GLU A 182
REMARK 465 ARG A 183
REMARK 465 GLU A 184
REMARK 465 GLN A 185
REMARK 465 GLU A 186
REMARK 465 LEU A 187
REMARK 465 LEU A 188
REMARK 465 ALA A 189
REMARK 465 ILE A 190
REMARK 465 GLY A 191
REMARK 465 LYS A 192
REMARK 465 THR A 193
REMARK 465 LYS A 194
REMARK 465 THR A 195
REMARK 465 CYS A 196
REMARK 465 GLU A 197
REMARK 465 SER A 198
REMARK 465 PRO A 199
REMARK 465 VAL A 200
REMARK 465 ASP A 213
REMARK 465 GLU A 214
REMARK 465 HIS A 215
REMARK 465 SER A 216
REMARK 465 GLN A 452
REMARK 465 PRO A 453
REMARK 465 ARG A 454
REMARK 465 GLY A 455
REMARK 465 GLY A 456
REMARK 465 SER A 457
REMARK 465 GLN A 458
REMARK 465 GLU A 459
REMARK 465 HIS A 460
REMARK 465 GLY A 461
REMARK 465 LEU A 462
REMARK 465 LYS A 496
REMARK 465 ALA A 497
REMARK 465 ASP A 513
REMARK 465 CYS A 514
REMARK 465 GLU A 515
REMARK 465 GLU A 539
REMARK 465 LYS A 540
REMARK 465 GLU A 541
REMARK 465 GLY A 542
REMARK 465 ARG A 543
REMARK 465 THR A 544
REMARK 465 ASN A 545
REMARK 465 VAL A 546
REMARK 465 PRO A 547
REMARK 465 GLY A 548
REMARK 465 SER A 549
REMARK 465 ARG A 550
REMARK 465 LEU A 551
REMARK 465 LYS A 552
REMARK 465 LEU A 553
REMARK 465 PRO A 554
REMARK 465 THR A 589
REMARK 465 GLU A 677
REMARK 465 SER A 678
REMARK 465 LEU A 679
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 134 CG CD CE NZ
REMARK 470 LYS A 139 CG CD CE NZ
REMARK 470 LYS A 142 CG CD CE NZ
REMARK 470 ARG A 147 CG CD NE CZ NH1 NH2
REMARK 470 ILE A 151 CG1 CG2 CD1
REMARK 470 GLU A 152 CG CD OE1 OE2
REMARK 470 LEU A 164 CG CD1 CD2
REMARK 470 ASN A 165 CG OD1 ND2
REMARK 470 ARG A 172 CG CD NE CZ NH1 NH2
REMARK 470 GLU A 176 CG CD OE1 OE2
REMARK 470 HIS A 177 CG ND1 CD2 CE1 NE2
REMARK 470 SER A 201 OG
REMARK 470 GLU A 217 CG CD OE1 OE2
REMARK 470 GLU A 313 CG CD OE1 OE2
REMARK 470 LYS A 430 CG CD CE NZ
REMARK 470 THR A 435 OG1 CG2
REMARK 470 HIS A 465 CG ND1 CD2 CE1 NE2
REMARK 470 LEU A 466 CG CD1 CD2
REMARK 470 GLU A 486 CG CD OE1 OE2
REMARK 470 SER A 487 OG
REMARK 470 ARG A 490 CG CD NE CZ NH1 NH2
REMARK 470 ASN A 491 CG OD1 ND2
REMARK 470 GLN A 495 CG CD OE1 NE2
REMARK 470 ASP A 498 CG OD1 OD2
REMARK 470 VAL A 499 CG1 CG2
REMARK 470 PHE A 502 CG CD1 CD2 CE1 CE2 CZ
REMARK 470 ARG A 504 CG CD NE CZ NH1 NH2
REMARK 470 MET A 505 CG SD CE
REMARK 470 ASN A 506 CG OD1 ND2
REMARK 470 GLN A 509 CG CD OE1 NE2
REMARK 470 LYS A 510 CG CD CE NZ
REMARK 470 GLU A 511 CG CD OE1 OE2
REMARK 470 VAL A 512 CG1 CG2
REMARK 470 LYS A 516 CG CD CE NZ
REMARK 470 GLU A 537 CG CD OE1 OE2
REMARK 470 GLU A 538 CG CD OE1 OE2
REMARK 470 GLU A 563 CG CD OE1 OE2
REMARK 470 LYS A 567 CG CD CE NZ
REMARK 470 LYS A 570 CG CD CE NZ
REMARK 470 TYR A 591 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 LEU A 592 CG CD1 CD2
REMARK 470 LYS A 594 CG CD CE NZ
REMARK 470 LYS A 595 CG CD CE NZ
REMARK 470 LYS A 619 CG CD CE NZ
REMARK 470 LYS A 620 CG CD CE NZ
REMARK 470 LEU A 621 CG CD1 CD2
REMARK 470 LYS A 652 CG CD CE NZ
REMARK 470 ILE A 653 CG1 CG2 CD1
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 337 2.22 -67.10
REMARK 500 LEU A 341 71.72 50.49
REMARK 500 ALA A 433 130.09 -171.87
REMARK 500 LEU A 450 47.31 -90.57
REMARK 500 ASN A 564 54.55 -116.83
REMARK 500 TYR A 572 -42.94 76.27
REMARK 500 GLU A 639 109.02 -48.43
REMARK 500
REMARK 500 REMARK: NULL
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue RM5 A 701
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 702
DBREF 7ALV A 131 679 UNP Q96P20 NLRP3_HUMAN 131 679
SEQADV 7ALV GLY A 130 UNP Q96P20 EXPRESSION TAG
SEQRES 1 A 550 GLY LYS MET LYS LYS ASP TYR ARG LYS LYS TYR ARG LYS
SEQRES 2 A 550 TYR VAL ARG SER ARG PHE GLN CYS ILE GLU ASP ARG ASN
SEQRES 3 A 550 ALA ARG LEU GLY GLU SER VAL SER LEU ASN LYS ARG TYR
SEQRES 4 A 550 THR ARG LEU ARG LEU ILE LYS GLU HIS ARG SER GLN GLN
SEQRES 5 A 550 GLU ARG GLU GLN GLU LEU LEU ALA ILE GLY LYS THR LYS
SEQRES 6 A 550 THR CYS GLU SER PRO VAL SER PRO ILE LYS MET GLU LEU
SEQRES 7 A 550 LEU PHE ASP PRO ASP ASP GLU HIS SER GLU PRO VAL HIS
SEQRES 8 A 550 THR VAL VAL PHE GLN GLY ALA ALA GLY ILE GLY LYS THR
SEQRES 9 A 550 ILE LEU ALA ARG LYS MET MET LEU ASP TRP ALA SER GLY
SEQRES 10 A 550 THR LEU TYR GLN ASP ARG PHE ASP TYR LEU PHE TYR ILE
SEQRES 11 A 550 HIS CYS ARG GLU VAL SER LEU VAL THR GLN ARG SER LEU
SEQRES 12 A 550 GLY ASP LEU ILE MET SER CYS CYS PRO ASP PRO ASN PRO
SEQRES 13 A 550 PRO ILE HIS LYS ILE VAL ARG LYS PRO SER ARG ILE LEU
SEQRES 14 A 550 PHE LEU MET ASP GLY PHE ASP GLU LEU GLN GLY ALA PHE
SEQRES 15 A 550 ASP GLU HIS ILE GLY PRO LEU CYS THR ASP TRP GLN LYS
SEQRES 16 A 550 ALA GLU ARG GLY ASP ILE LEU LEU SER SER LEU ILE ARG
SEQRES 17 A 550 LYS LYS LEU LEU PRO GLU ALA SER LEU LEU ILE THR THR
SEQRES 18 A 550 ARG PRO VAL ALA LEU GLU LYS LEU GLN HIS LEU LEU ASP
SEQRES 19 A 550 HIS PRO ARG HIS VAL GLU ILE LEU GLY PHE SER GLU ALA
SEQRES 20 A 550 LYS ARG LYS GLU TYR PHE PHE LYS TYR PHE SER ASP GLU
SEQRES 21 A 550 ALA GLN ALA ARG ALA ALA PHE SER LEU ILE GLN GLU ASN
SEQRES 22 A 550 GLU VAL LEU PHE THR MET CYS PHE ILE PRO LEU VAL CYS
SEQRES 23 A 550 TRP ILE VAL CYS THR GLY LEU LYS GLN GLN MET GLU SER
SEQRES 24 A 550 GLY LYS SER LEU ALA GLN THR SER LYS THR THR THR ALA
SEQRES 25 A 550 VAL TYR VAL PHE PHE LEU SER SER LEU LEU GLN PRO ARG
SEQRES 26 A 550 GLY GLY SER GLN GLU HIS GLY LEU CYS ALA HIS LEU TRP
SEQRES 27 A 550 GLY LEU CYS SER LEU ALA ALA ASP GLY ILE TRP ASN GLN
SEQRES 28 A 550 LYS ILE LEU PHE GLU GLU SER ASP LEU ARG ASN HIS GLY
SEQRES 29 A 550 LEU GLN LYS ALA ASP VAL SER ALA PHE LEU ARG MET ASN
SEQRES 30 A 550 LEU PHE GLN LYS GLU VAL ASP CYS GLU LYS PHE TYR SER
SEQRES 31 A 550 PHE ILE HIS MET THR PHE GLN GLU PHE PHE ALA ALA MET
SEQRES 32 A 550 TYR TYR LEU LEU GLU GLU GLU LYS GLU GLY ARG THR ASN
SEQRES 33 A 550 VAL PRO GLY SER ARG LEU LYS LEU PRO SER ARG ASP VAL
SEQRES 34 A 550 THR VAL LEU LEU GLU ASN TYR GLY LYS PHE GLU LYS GLY
SEQRES 35 A 550 TYR LEU ILE PHE VAL VAL ARG PHE LEU PHE GLY LEU VAL
SEQRES 36 A 550 ASN GLN GLU ARG THR SER TYR LEU GLU LYS LYS LEU SER
SEQRES 37 A 550 CYS LYS ILE SER GLN GLN ILE ARG LEU GLU LEU LEU LYS
SEQRES 38 A 550 TRP ILE GLU VAL LYS ALA LYS ALA LYS LYS LEU GLN ILE
SEQRES 39 A 550 GLN PRO SER GLN LEU GLU LEU PHE TYR CYS LEU TYR GLU
SEQRES 40 A 550 MET GLN GLU GLU ASP PHE VAL GLN ARG ALA MET ASP TYR
SEQRES 41 A 550 PHE PRO LYS ILE GLU ILE ASN LEU SER THR ARG MET ASP
SEQRES 42 A 550 HIS MET VAL SER SER PHE CYS ILE GLU ASN CYS HIS ARG
SEQRES 43 A 550 VAL GLU SER LEU
HET RM5 A 701 29
HET ADP A 702 27
HETNAM RM5 1-[4-CHLORANYL-2,6-DI(PROPAN-2-YL)PHENYL]-3-[4-(2-
HETNAM 2 RM5 OXIDANYLPROPAN-2-YL)FURAN-2-YL]SULFONYL-UREA
HETNAM ADP ADENOSINE-5'-DIPHOSPHATE
FORMUL 2 RM5 C20 H27 CL N2 O5 S
FORMUL 3 ADP C10 H15 N5 O10 P2
FORMUL 4 HOH *8(H2 O)
HELIX 1 AA1 LYS A 134 PHE A 148 1 15
HELIX 2 AA2 LEU A 164 TYR A 168 5 5
HELIX 3 AA3 LYS A 204 LEU A 208 5 5
HELIX 4 AA4 GLY A 231 SER A 245 1 15
HELIX 5 AA5 ARG A 262 VAL A 264 5 3
HELIX 6 AA6 SER A 271 CYS A 279 1 9
HELIX 7 AA7 PRO A 286 VAL A 291 1 6
HELIX 8 AA8 LYS A 293 SER A 295 5 3
HELIX 9 AA9 PHE A 304 LEU A 307 5 4
HELIX 10 AB1 GLY A 328 ARG A 337 1 10
HELIX 11 AB2 ARG A 351 VAL A 353 5 3
HELIX 12 AB3 ALA A 354 HIS A 360 1 7
HELIX 13 AB4 SER A 374 PHE A 386 1 13
HELIX 14 AB5 ASP A 388 ASN A 402 1 15
HELIX 15 AB6 ASN A 402 CYS A 409 1 8
HELIX 16 AB7 ILE A 411 SER A 428 1 18
HELIX 17 AB8 THR A 438 LEU A 450 1 13
HELIX 18 AB9 HIS A 465 ASN A 479 1 15
HELIX 19 AC1 GLU A 486 HIS A 492 1 7
HELIX 20 AC2 ALA A 501 LEU A 507 1 7
HELIX 21 AC3 HIS A 522 LEU A 535 1 14
HELIX 22 AC4 ASP A 557 ASN A 564 1 8
HELIX 23 AC5 LEU A 573 ASN A 585 1 13
HELIX 24 AC6 SER A 590 LYS A 594 5 5
HELIX 25 AC7 SER A 597 LYS A 617 1 21
HELIX 26 AC8 SER A 626 MET A 637 1 12
HELIX 27 AC9 GLU A 639 ASP A 648 1 10
HELIX 28 AD1 THR A 659 ASN A 672 1 14
SHEET 1 AA1 6 ARG A 172 LYS A 175 0
SHEET 2 AA1 6 PRO A 365 GLY A 372 -1 O LEU A 371 N ARG A 172
SHEET 3 AA1 6 THR A 221 GLN A 225 1 N GLN A 225 O ILE A 370
SHEET 4 AA1 6 SER A 345 THR A 350 1 O ILE A 348 N PHE A 224
SHEET 5 AA1 6 ILE A 297 ASP A 302 1 N PHE A 299 O SER A 345
SHEET 6 AA1 6 TYR A 255 HIS A 260 1 N PHE A 257 O LEU A 300
SHEET 1 AA2 2 GLN A 269 ARG A 270 0
SHEET 2 AA2 2 GLU A 326 ARG A 327 -1 O GLU A 326 N ARG A 270
SHEET 1 AA3 3 PHE A 484 GLU A 485 0
SHEET 2 AA3 3 PHE A 517 PHE A 520 -1 O TYR A 518 N PHE A 484
SHEET 3 AA3 3 PHE A 508 LYS A 510 -1 N GLN A 509 O SER A 519
CISPEP 1 GLY A 316 PRO A 317 0 -3.70
CISPEP 2 GLN A 624 PRO A 625 0 0.06
SITE 1 AC1 14 ALA A 227 ALA A 228 ARG A 351 PRO A 352
SITE 2 AC1 14 MET A 408 PHE A 410 ILE A 411 THR A 439
SITE 3 AC1 14 ILE A 574 PHE A 575 ARG A 578 LEU A 628
SITE 4 AC1 14 TYR A 632 MET A 661
SITE 1 AC2 13 ARG A 167 TYR A 168 THR A 169 LEU A 171
SITE 2 AC2 13 GLY A 229 GLY A 231 LYS A 232 THR A 233
SITE 3 AC2 13 ILE A 234 TYR A 381 PRO A 412 TRP A 416
SITE 4 AC2 13 HIS A 522
CRYST1 96.180 96.180 262.540 90.00 90.00 120.00 P 61 2 2 12
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010397 0.006003 0.000000 0.00000
SCALE2 0.000000 0.012006 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003809 0.00000