HEADER PROTEIN BINDING 08-OCT-20 7AMC TITLE SMBRD3(2), BROMODOMAIN 2 OF THE BROMODOMAIN 3 PROTEIN FROM SCHISTOSOMA TITLE 2 MANSONI IN COMPLEX WITH IBET726 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE BROMODOMAIN-CONTAINING PROTEIN 3, BRD3; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SCHISTOSOMA MANSONI; SOURCE 3 ORGANISM_COMMON: BLOOD FLUKE; SOURCE 4 ORGANISM_TAXID: 6183; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BROMO DOMAIN, METHYLLYSINE BINDING, EPIGENETIC READER DOMAIN, KEYWDS 2 INHIBITOR, COMPLEX, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.SCHIEDEL,M.A.MCDONOUGH,S.J.CONWAY REVDAT 2 31-JAN-24 7AMC 1 REMARK REVDAT 1 20-OCT-21 7AMC 0 JRNL AUTH M.SCHIEDEL,D.J.B.MCARDLE,M.A.MCDONOUGH,S.J.CONWAY JRNL TITL SBM3, BROMODOMAIN 3 FROM SCHISTOSOMA MANSONI IN COMPLEX WITH JRNL TITL 2 IBET726 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 157260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 8015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.9820 - 3.7894 1.00 4975 268 0.1524 0.1597 REMARK 3 2 3.7894 - 3.0080 1.00 5006 265 0.1326 0.1692 REMARK 3 3 3.0080 - 2.6278 1.00 5013 262 0.1349 0.1370 REMARK 3 4 2.6278 - 2.3876 1.00 5022 202 0.1279 0.1573 REMARK 3 5 2.3876 - 2.2164 1.00 4975 273 0.1355 0.1453 REMARK 3 6 2.2164 - 2.0858 1.00 4949 320 0.1333 0.1386 REMARK 3 7 2.0858 - 1.9813 1.00 4921 305 0.1413 0.1573 REMARK 3 8 1.9813 - 1.8951 1.00 4964 270 0.1470 0.1878 REMARK 3 9 1.8951 - 1.8221 1.00 5006 271 0.1530 0.1727 REMARK 3 10 1.8221 - 1.7592 1.00 4958 280 0.1572 0.1832 REMARK 3 11 1.7592 - 1.7042 1.00 4971 268 0.1568 0.1802 REMARK 3 12 1.7042 - 1.6555 1.00 4987 274 0.1593 0.1831 REMARK 3 13 1.6555 - 1.6119 1.00 5029 271 0.1599 0.1772 REMARK 3 14 1.6119 - 1.5726 1.00 4924 247 0.1714 0.2049 REMARK 3 15 1.5726 - 1.5368 1.00 4985 287 0.1735 0.2003 REMARK 3 16 1.5368 - 1.5041 1.00 5042 255 0.1830 0.2024 REMARK 3 17 1.5041 - 1.4740 1.00 4946 262 0.2005 0.2281 REMARK 3 18 1.4740 - 1.4462 1.00 4929 268 0.2072 0.2250 REMARK 3 19 1.4462 - 1.4204 1.00 5080 259 0.2226 0.2325 REMARK 3 20 1.4204 - 1.3963 1.00 4923 242 0.2352 0.2260 REMARK 3 21 1.3963 - 1.3738 1.00 4964 291 0.2360 0.2509 REMARK 3 22 1.3738 - 1.3526 1.00 4980 285 0.2460 0.2745 REMARK 3 23 1.3526 - 1.3328 1.00 4906 302 0.2565 0.2528 REMARK 3 24 1.3328 - 1.3140 1.00 5083 214 0.2661 0.2529 REMARK 3 25 1.3140 - 1.2962 1.00 4941 232 0.2783 0.2710 REMARK 3 26 1.2962 - 1.2794 1.00 5059 271 0.2896 0.2946 REMARK 3 27 1.2794 - 1.2634 1.00 4897 276 0.3052 0.2940 REMARK 3 28 1.2634 - 1.2482 1.00 5017 256 0.3132 0.3285 REMARK 3 29 1.2482 - 1.2337 1.00 4929 257 0.3272 0.3144 REMARK 3 30 1.2337 - 1.2200 0.98 4864 282 0.3452 0.3419 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.520 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.14 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1673 72.9560 38.2576 REMARK 3 T TENSOR REMARK 3 T11: 0.1793 T22: 0.2979 REMARK 3 T33: 0.2484 T12: -0.0787 REMARK 3 T13: 0.0168 T23: 0.0032 REMARK 3 L TENSOR REMARK 3 L11: 3.5223 L22: 6.8316 REMARK 3 L33: 3.9981 L12: -2.2531 REMARK 3 L13: -3.5769 L23: 3.1289 REMARK 3 S TENSOR REMARK 3 S11: 0.0206 S12: -0.0545 S13: 0.2102 REMARK 3 S21: -0.0683 S22: 0.1484 S23: -0.6693 REMARK 3 S31: -0.3671 S32: 0.8373 S33: -0.2131 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8047 78.1290 50.5102 REMARK 3 T TENSOR REMARK 3 T11: 0.2611 T22: 0.2028 REMARK 3 T33: 0.2263 T12: -0.0668 REMARK 3 T13: -0.0080 T23: -0.0751 REMARK 3 L TENSOR REMARK 3 L11: 7.7499 L22: 6.9639 REMARK 3 L33: 4.8110 L12: 2.4565 REMARK 3 L13: 1.3028 L23: 1.6173 REMARK 3 S TENSOR REMARK 3 S11: 0.0979 S12: -0.6638 S13: 0.8633 REMARK 3 S21: 0.3487 S22: -0.1839 S23: -0.0079 REMARK 3 S31: -0.6612 S32: 0.2804 S33: 0.0419 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3948 64.9194 52.0396 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.1922 REMARK 3 T33: 0.1697 T12: 0.0139 REMARK 3 T13: -0.0087 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 4.8948 L22: 4.7407 REMARK 3 L33: 5.9139 L12: 4.7267 REMARK 3 L13: -5.2363 L23: -4.8003 REMARK 3 S TENSOR REMARK 3 S11: 0.1305 S12: -0.4141 S13: -0.3949 REMARK 3 S21: 0.3197 S22: -0.2469 S23: -0.2891 REMARK 3 S31: 0.0370 S32: 0.3863 S33: 0.1787 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 75 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9632 63.3694 45.8955 REMARK 3 T TENSOR REMARK 3 T11: 0.1500 T22: 0.0758 REMARK 3 T33: 0.1457 T12: 0.0020 REMARK 3 T13: 0.0035 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 5.5945 L22: 0.6463 REMARK 3 L33: 3.6501 L12: 0.2776 REMARK 3 L13: -2.8614 L23: -0.1023 REMARK 3 S TENSOR REMARK 3 S11: -0.0782 S12: -0.0085 S13: -0.1190 REMARK 3 S21: -0.0120 S22: -0.0023 S23: -0.0178 REMARK 3 S31: 0.0678 S32: 0.0496 S33: 0.0764 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 76 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.6207 62.6984 34.5462 REMARK 3 T TENSOR REMARK 3 T11: 0.2215 T22: 0.2701 REMARK 3 T33: 0.1931 T12: -0.0014 REMARK 3 T13: 0.0421 T23: -0.0006 REMARK 3 L TENSOR REMARK 3 L11: 3.9502 L22: 3.9489 REMARK 3 L33: 3.4454 L12: -2.9529 REMARK 3 L13: 1.5180 L23: 0.0668 REMARK 3 S TENSOR REMARK 3 S11: 0.0947 S12: 0.2003 S13: -0.1258 REMARK 3 S21: -0.7126 S22: -0.3081 S23: -0.3321 REMARK 3 S31: 0.7654 S32: 0.5402 S33: 0.3984 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.2296 74.9711 39.3949 REMARK 3 T TENSOR REMARK 3 T11: 0.1874 T22: 0.1026 REMARK 3 T33: 0.1374 T12: -0.0080 REMARK 3 T13: -0.0000 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 3.4796 L22: 0.6204 REMARK 3 L33: 3.1187 L12: 0.0133 REMARK 3 L13: -1.7096 L23: -0.1808 REMARK 3 S TENSOR REMARK 3 S11: 0.1062 S12: 0.1745 S13: 0.2801 REMARK 3 S21: -0.0327 S22: -0.0300 S23: -0.0147 REMARK 3 S31: -0.4061 S32: -0.0138 S33: -0.0833 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 124 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.6897 73.8736 26.9407 REMARK 3 T TENSOR REMARK 3 T11: 0.4333 T22: 0.5502 REMARK 3 T33: 0.5385 T12: -0.1413 REMARK 3 T13: 0.2025 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 3.5985 L22: 4.8806 REMARK 3 L33: 7.1630 L12: 4.1796 REMARK 3 L13: -2.8405 L23: -3.6013 REMARK 3 S TENSOR REMARK 3 S11: -0.0898 S12: 0.6507 S13: -0.3038 REMARK 3 S21: -1.1962 S22: 0.1201 S23: -2.2560 REMARK 3 S31: 0.0021 S32: 0.8497 S33: -0.2236 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 15 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.3406 44.7797 45.0366 REMARK 3 T TENSOR REMARK 3 T11: 0.1970 T22: 0.0911 REMARK 3 T33: 0.2126 T12: -0.0014 REMARK 3 T13: -0.0396 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 3.2757 L22: 4.8228 REMARK 3 L33: 5.7038 L12: 0.5786 REMARK 3 L13: -0.7547 L23: -0.1187 REMARK 3 S TENSOR REMARK 3 S11: 0.0916 S12: 0.0872 S13: -0.4546 REMARK 3 S21: -0.3928 S22: -0.0982 S23: 0.4274 REMARK 3 S31: 0.4269 S32: -0.3043 S33: 0.0167 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 32 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.6543 47.1467 56.0482 REMARK 3 T TENSOR REMARK 3 T11: 0.1229 T22: 0.1313 REMARK 3 T33: 0.1916 T12: 0.0086 REMARK 3 T13: -0.0172 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 7.3918 L22: 9.1747 REMARK 3 L33: 8.6947 L12: -1.5763 REMARK 3 L13: 1.7112 L23: 2.9506 REMARK 3 S TENSOR REMARK 3 S11: 0.0815 S12: 0.0513 S13: -0.1392 REMARK 3 S21: -0.0649 S22: 0.1903 S23: -0.5370 REMARK 3 S31: 0.3165 S32: 0.5793 S33: -0.2249 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 44 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.6410 46.5631 66.3762 REMARK 3 T TENSOR REMARK 3 T11: 0.2198 T22: 0.2624 REMARK 3 T33: 0.2106 T12: -0.0603 REMARK 3 T13: -0.0348 T23: 0.0493 REMARK 3 L TENSOR REMARK 3 L11: 3.1473 L22: 2.2278 REMARK 3 L33: 4.2399 L12: -0.1062 REMARK 3 L13: -3.1204 L23: 1.7105 REMARK 3 S TENSOR REMARK 3 S11: 0.0472 S12: -0.2696 S13: -0.3120 REMARK 3 S21: 0.3667 S22: -0.1280 S23: -0.0452 REMARK 3 S31: 0.8617 S32: -0.3023 S33: 0.0730 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 49 THROUGH 66 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.8923 54.5793 70.8913 REMARK 3 T TENSOR REMARK 3 T11: 0.1398 T22: 0.3329 REMARK 3 T33: 0.1604 T12: -0.0116 REMARK 3 T13: 0.0186 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.9621 L22: 1.3975 REMARK 3 L33: 5.2751 L12: 0.8678 REMARK 3 L13: 3.1382 L23: 1.2284 REMARK 3 S TENSOR REMARK 3 S11: 0.0165 S12: -0.1327 S13: 0.1088 REMARK 3 S21: 0.1118 S22: -0.1475 S23: 0.1679 REMARK 3 S31: 0.0258 S32: -0.9914 S33: 0.1056 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 67 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8743 52.0216 55.2806 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.2028 REMARK 3 T33: 0.1501 T12: 0.0012 REMARK 3 T13: -0.0017 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 2.1852 L22: 1.2739 REMARK 3 L33: 5.1312 L12: 0.7116 REMARK 3 L13: 2.7970 L23: 1.1826 REMARK 3 S TENSOR REMARK 3 S11: 0.0207 S12: -0.2394 S13: -0.0871 REMARK 3 S21: -0.0743 S22: -0.0689 S23: 0.1251 REMARK 3 S31: -0.0102 S32: -0.6045 S33: 0.0782 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5821 57.9262 53.5917 REMARK 3 T TENSOR REMARK 3 T11: 0.1916 T22: 0.1503 REMARK 3 T33: 0.1753 T12: 0.0033 REMARK 3 T13: 0.0034 T23: 0.0119 REMARK 3 L TENSOR REMARK 3 L11: 4.1434 L22: 1.7025 REMARK 3 L33: 5.2167 L12: 2.2569 REMARK 3 L13: 4.6704 L23: 2.7150 REMARK 3 S TENSOR REMARK 3 S11: -0.0796 S12: 0.1141 S13: -0.0521 REMARK 3 S21: -0.0861 S22: 0.0805 S23: -0.1036 REMARK 3 S31: -0.3620 S32: 0.2411 S33: 0.0054 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6678 51.6755 38.5678 REMARK 3 T TENSOR REMARK 3 T11: 0.3112 T22: 0.2864 REMARK 3 T33: 0.2702 T12: 0.0185 REMARK 3 T13: -0.0955 T23: -0.0428 REMARK 3 L TENSOR REMARK 3 L11: 3.9124 L22: 6.3498 REMARK 3 L33: 3.8409 L12: -0.3601 REMARK 3 L13: 3.7316 L23: -1.1624 REMARK 3 S TENSOR REMARK 3 S11: 0.1168 S12: 0.4731 S13: -0.2277 REMARK 3 S21: -0.5497 S22: -0.0263 S23: 0.6809 REMARK 3 S31: 0.1084 S32: -0.5941 S33: -0.0820 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7AMC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111683. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I24 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97862 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER R 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS 1.12.5 REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.3 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 157260 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.220 REMARK 200 RESOLUTION RANGE LOW (A) : 43.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.40 REMARK 200 R MERGE (I) : 0.19300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.60 REMARK 200 R MERGE FOR SHELL (I) : 2.05100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3JVL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM DIHYDROGEN PHOSPHATE REMARK 280 MONOHYDRATE, 20% W/V PEG 3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.30250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.30250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 25.90050 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.62500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 25.90050 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.62500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 63.30250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 25.90050 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.62500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 63.30250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 25.90050 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.62500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 449 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 1 REMARK 465 PRO A 2 REMARK 465 LYS A 3 REMARK 465 ARG A 4 REMARK 465 GLU A 5 REMARK 465 TYR A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 8 REMARK 465 ARG A 9 REMARK 465 ASN A 10 REMARK 465 VAL A 11 REMARK 465 GLY A 12 REMARK 465 LYS A 13 REMARK 465 ARG A 14 REMARK 465 SER B 1 REMARK 465 PRO B 2 REMARK 465 LYS B 3 REMARK 465 ARG B 4 REMARK 465 GLU B 5 REMARK 465 TYR B 6 REMARK 465 GLU B 7 REMARK 465 GLU B 8 REMARK 465 ARG B 9 REMARK 465 ASN B 10 REMARK 465 VAL B 11 REMARK 465 GLY B 12 REMARK 465 LYS B 13 REMARK 465 ARG B 14 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 15 CG CD1 CD2 REMARK 470 ARG A 16 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 38 OD2 REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 LEU B 15 N CB CG CD1 CD2 REMARK 470 SER B 129 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GOL B 203 O HOH B 301 1.95 REMARK 500 O HOH A 338 O HOH A 419 2.02 REMARK 500 O HOH A 446 O HOH B 467 2.11 REMARK 500 O HOH A 345 O HOH A 408 2.14 REMARK 500 O1 EDO A 203 O HOH A 301 2.14 REMARK 500 O HOH B 379 O HOH B 404 2.14 REMARK 500 O HOH A 446 O HOH B 380 2.15 REMARK 500 OD1 ASP B 30 O HOH B 303 2.17 REMARK 500 OE2 GLU B 102 O HOH B 304 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 317 O HOH A 433 3655 2.15 REMARK 500 O HOH A 335 O HOH A 335 3755 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 73B A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 73B B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 DBREF1 7AMC A 2 129 UNP A0A5K4EQL3_SCHMA DBREF2 7AMC A A0A5K4EQL3 235 362 DBREF1 7AMC B 2 129 UNP A0A5K4EQL3_SCHMA DBREF2 7AMC B A0A5K4EQL3 235 362 SEQADV 7AMC SER A 1 UNP A0A5K4EQL EXPRESSION TAG SEQADV 7AMC SER B 1 UNP A0A5K4EQL EXPRESSION TAG SEQRES 1 A 129 SER PRO LYS ARG GLU TYR GLU GLU ARG ASN VAL GLY LYS SEQRES 2 A 129 ARG LEU ARG LEU SER GLU ALA LEU LYS ALA CYS SER ASN SEQRES 3 A 129 ILE LEU LYS ASP ILE SER SER GLN ARG TYR ARG ASP LEU SEQRES 4 A 129 ASN HIS PHE PHE LEU LYS PRO VAL ASP VAL VAL ALA LEU SEQRES 5 A 129 GLY LEU HIS ASP TYR TYR ASP VAL VAL LYS LYS ALA MET SEQRES 6 A 129 ASP LEU SER THR ILE LYS THR LYS LEU GLU SER GLY GLN SEQRES 7 A 129 TYR HIS THR LYS TYR ASP PHE ALA ASP ASP VAL ARG LEU SEQRES 8 A 129 MET PHE ASN ASN CYS TYR LYS TYR ASN GLY GLU ASP SER SEQRES 9 A 129 GLU VAL ALA ARG VAL GLY LYS GLN LEU GLN ALA ILE PHE SEQRES 10 A 129 ASP GLU ASN PHE ALA LYS VAL PRO ASP ASP GLU SER SEQRES 1 B 129 SER PRO LYS ARG GLU TYR GLU GLU ARG ASN VAL GLY LYS SEQRES 2 B 129 ARG LEU ARG LEU SER GLU ALA LEU LYS ALA CYS SER ASN SEQRES 3 B 129 ILE LEU LYS ASP ILE SER SER GLN ARG TYR ARG ASP LEU SEQRES 4 B 129 ASN HIS PHE PHE LEU LYS PRO VAL ASP VAL VAL ALA LEU SEQRES 5 B 129 GLY LEU HIS ASP TYR TYR ASP VAL VAL LYS LYS ALA MET SEQRES 6 B 129 ASP LEU SER THR ILE LYS THR LYS LEU GLU SER GLY GLN SEQRES 7 B 129 TYR HIS THR LYS TYR ASP PHE ALA ASP ASP VAL ARG LEU SEQRES 8 B 129 MET PHE ASN ASN CYS TYR LYS TYR ASN GLY GLU ASP SER SEQRES 9 B 129 GLU VAL ALA ARG VAL GLY LYS GLN LEU GLN ALA ILE PHE SEQRES 10 B 129 ASP GLU ASN PHE ALA LYS VAL PRO ASP ASP GLU SER HET 73B A 201 31 HET EDO A 202 4 HET EDO A 203 4 HET 73B B 201 31 HET GOL B 202 6 HET GOL B 203 6 HETNAM 73B 4-[(2S,4R)-1-ACETYL-4-[(4-CHLOROPHENYL)AMINO]-2-METHYL- HETNAM 2 73B 1,2,3,4-TETRAHYDROQUINOLIN-6-YL]BENZOIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 73B 2(C25 H23 CL N2 O3) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 7 GOL 2(C3 H8 O3) FORMUL 9 HOH *335(H2 O) HELIX 1 AA1 SER A 18 SER A 32 1 15 HELIX 2 AA2 SER A 33 ARG A 35 5 3 HELIX 3 AA3 TYR A 36 HIS A 41 1 6 HELIX 4 AA4 PHE A 42 LEU A 44 5 3 HELIX 5 AA5 ASP A 48 GLY A 53 1 6 HELIX 6 AA6 ASP A 56 VAL A 61 1 6 HELIX 7 AA7 ASP A 66 SER A 76 1 11 HELIX 8 AA8 THR A 81 GLY A 101 1 21 HELIX 9 AA9 SER A 104 ALA A 122 1 19 HELIX 10 AB1 SER B 18 SER B 32 1 15 HELIX 11 AB2 SER B 33 ARG B 35 5 3 HELIX 12 AB3 TYR B 36 HIS B 41 1 6 HELIX 13 AB4 PHE B 42 LEU B 44 5 3 HELIX 14 AB5 ASP B 48 GLY B 53 1 6 HELIX 15 AB6 ASP B 56 VAL B 61 1 6 HELIX 16 AB7 ASP B 66 SER B 76 1 11 HELIX 17 AB8 THR B 81 GLY B 101 1 21 HELIX 18 AB9 SER B 104 ALA B 122 1 19 SITE 1 AC1 9 PHE A 42 LEU A 54 ASN A 100 EDO A 202 SITE 2 AC1 9 HOH A 304 HOH A 329 HOH A 396 GLN B 34 SITE 3 AC1 9 LEU B 52 SITE 1 AC2 4 73B A 201 HOH A 305 HOH A 401 GLU B 105 SITE 1 AC3 3 HOH A 301 73B B 201 HOH B 322 SITE 1 AC4 13 EDO A 203 HOH A 334 GLN B 34 PHE B 42 SITE 2 AC4 13 LEU B 54 CYS B 96 ASN B 100 GLU B 105 SITE 3 AC4 13 HOH B 316 HOH B 335 HOH B 344 HOH B 361 SITE 4 AC4 13 HOH B 432 SITE 1 AC5 8 TYR A 99 ASN A 100 VAL B 49 LEU B 54 SITE 2 AC5 8 HIS B 55 HOH B 306 HOH B 404 HOH B 447 SITE 1 AC6 5 LEU A 54 TYR B 99 ASN B 100 GLY B 101 SITE 2 AC6 5 HOH B 301 CRYST1 51.801 83.250 126.605 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019305 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012012 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007899 0.00000