HEADER HYDROLASE 20-OCT-20 7APV TITLE STRUCTURE OF ARTEMIS/DCLRE1C/SNM1C IN COMPLEX WITH CEFTRIAXONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN ARTEMIS; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DNA CROSS-LINK REPAIR 1C PROTEIN,PROTEIN A-SCID,SNM1 HOMOLOG COMPND 5 C,HSNM1C,SNM1-LIKE PROTEIN; COMPND 6 EC: 3.1.-.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DCLRE1C, ARTEMIS, ASCID, SCIDA, SNM1C; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS ENDONUCLEASE, DNA REPAIR, V(D)J RECOMBINATION, NHEJ RECOMBINATION, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.YOSAATMADJA,S.GOUBIN,J.A.NEWMAN,S.M.M.MUKHOPADHYAY,A.A.DANNERFJORD, AUTHOR 2 N.A.BURGESS-BROWN,F.VON DELFT,C.H.ARROWSMITH,C.BOUNTRA,O.GILEADI REVDAT 4 31-JAN-24 7APV 1 REMARK REVDAT 3 29-SEP-21 7APV 1 JRNL REMARK REVDAT 2 25-AUG-21 7APV 1 JRNL REVDAT 1 23-DEC-20 7APV 0 JRNL AUTH Y.YOSAATMADJA,H.T.BADDOCK,J.A.NEWMAN,M.BIELINSKI,A.E.GAVARD, JRNL AUTH 2 S.M.M.MUKHOPADHYAY,A.A.DANNERFJORD,C.J.SCHOFIELD,P.J.MCHUGH, JRNL AUTH 3 O.GILEADI JRNL TITL STRUCTURAL AND MECHANISTIC INSIGHTS INTO THE ARTEMIS JRNL TITL 2 ENDONUCLEASE AND STRATEGIES FOR ITS INHIBITION. JRNL REF NUCLEIC ACIDS RES. V. 49 9310 2021 JRNL REFN ESSN 1362-4962 JRNL PMID 34387696 JRNL DOI 10.1093/NAR/GKAB693 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.69 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 21085 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1109 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1557 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 90 REMARK 3 BIN FREE R VALUE : 0.2900 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2803 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 107 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.22000 REMARK 3 B22 (A**2) : -0.28000 REMARK 3 B33 (A**2) : -0.87000 REMARK 3 B12 (A**2) : -1.32000 REMARK 3 B13 (A**2) : 0.11000 REMARK 3 B23 (A**2) : 0.33000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.220 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.174 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.133 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.820 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3087 ; 0.010 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2874 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4234 ; 1.502 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6609 ; 0.945 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 403 ; 6.165 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 133 ;33.741 ;22.105 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 498 ;13.125 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;20.032 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 474 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3512 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 743 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7APV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111877. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.28 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22195 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 47.690 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.11600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.64900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.8.3 REMARK 200 STARTING MODEL: 6TT5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350 AND 0.2 M AMMONIUM REMARK 280 CHLORIDE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 SER A 3 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 40 CG CD CE NZ REMARK 470 LEU A 55 CG CD1 CD2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 GLN A 92 CG CD OE1 NE2 REMARK 470 VAL A 96 CG1 CG2 REMARK 470 GLU A 98 CG CD OE1 OE2 REMARK 470 SER A 100 OG REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 ARG A 155 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 231 CG CD CE NZ REMARK 470 ARG A 236 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 LYS A 260 CG CD CE NZ REMARK 470 GLU A 262 CG CD OE1 OE2 REMARK 470 GLU A 263 CG CD OE1 OE2 REMARK 470 GLN A 266 CG CD OE1 NE2 REMARK 470 LYS A 269 CG CD CE NZ REMARK 470 PHE A 294 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 297 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 299 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 300 CG CD CE NZ REMARK 470 VAL A 344 CG1 CG2 REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 SER A 361 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 21 -123.68 53.76 REMARK 500 ALA A 99 -67.82 -97.35 REMARK 500 PHE A 173 44.65 -89.04 REMARK 500 ARG A 279 17.34 56.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 504 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 33 NE2 REMARK 620 2 HIS A 35 ND1 93.1 REMARK 620 3 HIS A 115 NE2 95.7 91.1 REMARK 620 4 ASP A 136 OD2 91.4 169.7 97.6 REMARK 620 5 9F2 A 502 O1 174.9 91.8 82.8 84.0 REMARK 620 6 9F2 A 502 O2 105.3 84.5 158.7 85.4 76.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 228 ND1 REMARK 620 2 HIS A 254 ND1 102.4 REMARK 620 3 CYS A 256 SG 108.7 119.7 REMARK 620 4 CYS A 272 SG 109.9 103.1 112.4 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6TT5 RELATED DB: PDB REMARK 900 6TT5 IS THE APO PROTEIN DBREF 7APV A 1 361 UNP Q96SD1 DCR1C_HUMAN 1 361 SEQADV 7APV SER A 0 UNP Q96SD1 EXPRESSION TAG SEQRES 1 A 362 SER MET SER SER PHE GLU GLY GLN MET ALA GLU TYR PRO SEQRES 2 A 362 THR ILE SER ILE ASP ARG PHE ASP ARG GLU ASN LEU ARG SEQRES 3 A 362 ALA ARG ALA TYR PHE LEU SER HIS CYS HIS LYS ASP HIS SEQRES 4 A 362 MET LYS GLY LEU ARG ALA PRO THR LEU LYS ARG ARG LEU SEQRES 5 A 362 GLU CYS SER LEU LYS VAL TYR LEU TYR CYS SER PRO VAL SEQRES 6 A 362 THR LYS GLU LEU LEU LEU THR SER PRO LYS TYR ARG PHE SEQRES 7 A 362 TRP LYS LYS ARG ILE ILE SER ILE GLU ILE GLU THR PRO SEQRES 8 A 362 THR GLN ILE SER LEU VAL ASP GLU ALA SER GLY GLU LYS SEQRES 9 A 362 GLU GLU ILE VAL VAL THR LEU LEU PRO ALA GLY HIS CYS SEQRES 10 A 362 PRO GLY SER VAL MET PHE LEU PHE GLN GLY ASN ASN GLY SEQRES 11 A 362 THR VAL LEU TYR THR GLY ASP PHE ARG LEU ALA GLN GLY SEQRES 12 A 362 GLU ALA ALA ARG MET GLU LEU LEU HIS SER GLY GLY ARG SEQRES 13 A 362 VAL LYS ASP ILE GLN SER VAL TYR LEU ASP THR THR PHE SEQRES 14 A 362 CYS ASP PRO ARG PHE TYR GLN ILE PRO SER ARG GLU GLU SEQRES 15 A 362 CYS LEU SER GLY VAL LEU GLU LEU VAL ARG SER TRP ILE SEQRES 16 A 362 THR ARG SER PRO TYR HIS VAL VAL TRP LEU ASN CYS LYS SEQRES 17 A 362 ALA ALA TYR GLY TYR GLU TYR LEU PHE THR ASN LEU SER SEQRES 18 A 362 GLU GLU LEU GLY VAL GLN VAL HIS VAL ASN LYS LEU ASP SEQRES 19 A 362 MET PHE ARG ASN MET PRO GLU ILE LEU HIS HIS LEU THR SEQRES 20 A 362 THR ASP ARG ASN THR GLN ILE HIS ALA CYS ARG HIS PRO SEQRES 21 A 362 LYS ALA GLU GLU TYR PHE GLN TRP SER LYS LEU PRO CYS SEQRES 22 A 362 GLY ILE THR SER ARG ASN ARG ILE PRO LEU HIS ILE ILE SEQRES 23 A 362 SER ILE LYS PRO SER THR MET TRP PHE GLY GLU ARG SER SEQRES 24 A 362 ARG LYS THR ASN VAL ILE VAL ARG THR GLY GLU SER SER SEQRES 25 A 362 TYR ARG ALA CYS PHE SER PHE HIS SER SER TYR SER GLU SEQRES 26 A 362 ILE LYS ASP PHE LEU SER TYR LEU CYS PRO VAL ASN ALA SEQRES 27 A 362 TYR PRO ASN VAL ILE PRO VAL GLY THR THR MET ASP LYS SEQRES 28 A 362 VAL VAL GLU ILE LEU LYS PRO LEU CYS ARG SER HET EDO A 501 4 HET 9F2 A 502 36 HET ZN A 503 1 HET NI A 504 1 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM 9F2 CEFTRIAXONE HETNAM ZN ZINC ION HETNAM NI NICKEL (II) ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 5(C2 H6 O2) FORMUL 3 9F2 C18 H18 N8 O7 S3 FORMUL 4 ZN ZN 2+ FORMUL 5 NI NI 2+ FORMUL 10 HOH *107(H2 O) HELIX 1 AA1 ASP A 20 ALA A 26 5 7 HELIX 2 AA2 HIS A 35 MET A 39 5 5 HELIX 3 AA3 ALA A 44 CYS A 53 1 10 HELIX 4 AA4 SER A 62 LEU A 70 1 9 HELIX 5 AA5 THR A 71 LYS A 80 5 10 HELIX 6 AA6 GLY A 142 MET A 147 1 6 HELIX 7 AA7 ASP A 170 TYR A 174 5 5 HELIX 8 AA8 SER A 178 THR A 195 1 18 HELIX 9 AA9 TYR A 212 GLY A 224 1 13 HELIX 10 AB1 LEU A 232 ARG A 236 5 5 HELIX 11 AB2 MET A 238 HIS A 243 1 6 HELIX 12 AB3 LYS A 260 GLN A 266 1 7 HELIX 13 AB4 SER A 321 CYS A 333 1 13 HELIX 14 AB5 THR A 347 LYS A 356 1 10 HELIX 15 AB6 PRO A 357 CYS A 359 5 3 SHEET 1 AA1 4 ILE A 14 ILE A 16 0 SHEET 2 AA1 4 ALA A 28 PHE A 30 1 O ALA A 28 N SER A 15 SHEET 3 AA1 4 LEU A 59 CYS A 61 1 O TYR A 60 N TYR A 29 SHEET 4 AA1 4 ILE A 82 SER A 84 1 O ILE A 83 N LEU A 59 SHEET 1 AA2 6 THR A 91 VAL A 96 0 SHEET 2 AA2 6 LYS A 103 PRO A 112 -1 O ILE A 106 N ILE A 93 SHEET 3 AA2 6 VAL A 120 GLY A 126 -1 O MET A 121 N LEU A 111 SHEET 4 AA2 6 GLY A 129 TYR A 133 -1 O VAL A 131 N PHE A 124 SHEET 5 AA2 6 SER A 161 LEU A 164 1 O TYR A 163 N LEU A 132 SHEET 6 AA2 6 ASN A 336 PRO A 339 1 O TYR A 338 N VAL A 162 SHEET 1 AA3 2 HIS A 151 SER A 152 0 SHEET 2 AA3 2 ARG A 155 VAL A 156 -1 O ARG A 155 N SER A 152 SHEET 1 AA4 7 LEU A 245 THR A 246 0 SHEET 2 AA4 7 VAL A 227 HIS A 228 1 N VAL A 227 O THR A 246 SHEET 3 AA4 7 ILE A 253 HIS A 254 1 O ILE A 253 N HIS A 228 SHEET 4 AA4 7 HIS A 200 LEU A 204 1 N LEU A 204 O HIS A 254 SHEET 5 AA4 7 HIS A 283 SER A 290 1 O ILE A 285 N TRP A 203 SHEET 6 AA4 7 SER A 311 CYS A 315 1 O ALA A 314 N SER A 290 SHEET 7 AA4 7 ILE A 304 GLY A 308 -1 N VAL A 305 O ARG A 313 SHEET 1 AA5 2 SER A 276 ARG A 277 0 SHEET 2 AA5 2 ILE A 280 PRO A 281 -1 O ILE A 280 N ARG A 277 LINK NE2 HIS A 33 NI NI A 504 1555 1555 2.30 LINK ND1 HIS A 35 NI NI A 504 1555 1555 2.22 LINK NE2 HIS A 115 NI NI A 504 1555 1555 2.23 LINK OD2 ASP A 136 NI NI A 504 1555 1555 2.16 LINK ND1 HIS A 228 ZN ZN A 503 1555 1555 2.22 LINK ND1 HIS A 254 ZN ZN A 503 1555 1555 2.13 LINK SG CYS A 256 ZN ZN A 503 1555 1555 2.30 LINK SG CYS A 272 ZN ZN A 503 1555 1555 2.31 LINK O1 9F2 A 502 NI NI A 504 1555 1555 2.24 LINK O2 9F2 A 502 NI NI A 504 1555 1555 1.99 CRYST1 35.880 48.103 48.252 82.76 76.29 86.30 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027871 -0.001802 -0.006639 0.00000 SCALE2 0.000000 0.020832 -0.002396 0.00000 SCALE3 0.000000 0.000000 0.021473 0.00000