HEADER OXIDOREDUCTASE 26-OCT-20 7ARZ TITLE TERNARY COMPLEX OF NAD-DEPENDENT FORMATE DEHYDROGENASE FROM TITLE 2 PHYSCOMITRIUM PATENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: FORMATE DEHYDROGENASE, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: WE USED PLASMID WITH GENE OF MATURATED ENZYME WITHOUT COMPND 5 SIGNAL PEPTIDE. WE ALSO ADDED EXTRA ALA RESIDUE AT N-TERMINUS BECAUSE COMPND 6 ACCORDING TO WARSHASLY RULE PRESENCE OF ALA OR GLY RESIDUES EXACTLY COMPND 7 AT N-TERMINUS PROVIDES HIGHER PROTEIN RESISTANCE AND STABILITY DURING COMPND 8 EXPRESSION IN E.COLI. EXPRESSION IN E.COLI OF FULL LENGTH PRO-PEPTIDE COMPND 9 RESULTED IN INACTIVE INCLUSION BODIES.; COMPND 10 SYNONYM: FDH,NAD-DEPENDENT FORMATE DEHYDROGENASE; COMPND 11 EC: 1.17.1.9; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHYSCOMITRIUM PATENS; SOURCE 3 ORGANISM_COMMON: SPREADING-LEAVED EARTH MOSS; SOURCE 4 ORGANISM_TAXID: 3218; SOURCE 5 GENE: PHYPA_020821, PHYPADRAFT_214795; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: CODONPLUS-RP KEYWDS FORMATE DEHYDROGENASE, BIOCATALYST, COFACTOR, NAD, NICOTINAMIDE KEYWDS 2 MONONUCLEOTIDE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.A.GORYAYNOVA,A.Y.NIKOLAEVA,A.A.POMETUN,S.S.SAVIN,P.D.PARSHIN, AUTHOR 2 V.O.POPOV,V.I.TISHKOV,K.M.BOYKO REVDAT 2 31-JAN-24 7ARZ 1 REMARK REVDAT 1 03-NOV-21 7ARZ 0 JRNL AUTH K.M.BOYKO,A.A.POMETUN,D.A.GORYAYNOVA,A.Y.NIKOLAEVA, JRNL AUTH 2 P.D.PARSHIN,V.O.POPOV,V.I.TISHKOV JRNL TITL TERNARY COMPLEX OF NAD-DEPENDENT FORMATE DEHYDROGENASE FROM JRNL TITL 2 PHYSCOMITRIUM PATENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 56.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 28965 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1516 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2104 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 96 REMARK 3 BIN FREE R VALUE : 0.4260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2785 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 51.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.49000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : -1.59000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.189 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.534 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2912 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2728 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3940 ; 1.608 ; 1.643 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6295 ; 1.279 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 362 ; 7.519 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;34.746 ;22.483 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 497 ;16.863 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.175 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 371 ; 0.074 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3307 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 646 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7ARZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 27-OCT-20. REMARK 100 THE DEPOSITION ID IS D_1292111986. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-DEC-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.969 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30481 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 56.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 2.710 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.0800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.67 REMARK 200 R MERGE FOR SHELL (I) : 0.75400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.240 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 3N7U REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS 0.1M PH 8.0 + AMMONIUM SULFATE REMARK 280 2.0M, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 135.62667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.81333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.81333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 135.62667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 67.81333 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 103 CG OD1 OD2 REMARK 470 GLU A 387 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 337 C PRO A 338 N 0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 64 -125.36 37.04 REMARK 500 HIS A 122 65.47 -156.22 REMARK 500 THR A 166 134.91 -34.80 REMARK 500 ASN A 169 27.38 -146.99 REMARK 500 ASN A 278 43.10 -140.61 REMARK 500 PHE A 289 74.78 -101.23 REMARK 500 ALA A 307 -86.35 -85.70 REMARK 500 ALA A 352 51.35 -118.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZI A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AZI A 503 DBREF 7ARZ A 43 402 UNP A9SQZ2 A9SQZ2_PHYPA 43 402 SEQADV 7ARZ ALA A 42 UNP A9SQZ2 EXPRESSION TAG SEQRES 1 A 361 ALA PHE SER TYR SER SER ALA ALA GLY GLY GLU SER LYS SEQRES 2 A 361 LYS ILE LEU GLY VAL PHE PHE ALA ALA HIS GLU TYR ALA SEQRES 3 A 361 LYS ASN PRO GLU PHE LEU GLY CYS VAL GLU ASN ALA LEU SEQRES 4 A 361 GLY ILE ARG GLU TRP LEU GLU SER LYS GLY HIS LYS TYR SEQRES 5 A 361 VAL VAL THR SER ASP LYS ASP GLY PRO ASP SER GLU LEU SEQRES 6 A 361 ASP LYS GLU LEU ALA ASP ALA HIS ILE LEU ILE THR THR SEQRES 7 A 361 PRO PHE HIS PRO ALA TYR MET THR LYS GLU ARG LEU ALA SEQRES 8 A 361 LYS ALA LYS ASN LEU GLU LEU LEU VAL THR ALA GLY VAL SEQRES 9 A 361 GLY SER ASP HIS ILE ASP LEU HIS ALA ALA ALA GLU LYS SEQRES 10 A 361 GLY LEU THR VAL SER GLU VAL THR GLY SER ASN VAL THR SEQRES 11 A 361 SER VAL ALA GLU ASP GLU VAL LEU ARG ILE LEU VAL LEU SEQRES 12 A 361 VAL ARG ASN PHE ALA PRO GLY TRP LYS GLN VAL SER GLU SEQRES 13 A 361 GLY GLY TRP ASN VAL ALA ALA VAL VAL HIS HIS ALA TYR SEQRES 14 A 361 ASP LEU ILE ASP ARG THR VAL GLY THR VAL GLY GLY GLY SEQRES 15 A 361 ARG ILE GLY GLN GLU LEU MET LYS ARG LEU LYS GLY PHE SEQRES 16 A 361 GLY LEU LYS GLU MET LEU TYR TYR ASP ARG ASN SER LEU SEQRES 17 A 361 GLY ALA GLU ARG GLU LYS GLU LEU GLY CYS LYS ARG GLU SEQRES 18 A 361 THR ASP LEU ASP THR MET LEU SER LYS CYS ASP VAL VAL SEQRES 19 A 361 VAL VAL ASN THR PRO LEU THR ASP GLN THR ARG GLY LEU SEQRES 20 A 361 PHE ASN LYS GLU ARG ILE ALA LYS MET LYS LYS GLY ALA SEQRES 21 A 361 TYR LEU VAL ASN ASN ALA ARG GLY ALA ILE ALA ASP THR SEQRES 22 A 361 GLU ALA VAL LYS GLU ALA CYS GLU SER GLY HIS LEU GLY SEQRES 23 A 361 GLY TYR GLY GLY ASP VAL TRP ASN ALA GLN PRO ALA GLY SEQRES 24 A 361 LYS ASP HIS PRO TRP ARG TYR MET PRO ASN HIS ALA MET SEQRES 25 A 361 THR PRO HIS ILE SER GLY THR THR LEU ASP ALA GLN LYS SEQRES 26 A 361 ARG PHE ALA ALA GLY THR LYS ASP MET ILE ASP ARG TRP SEQRES 27 A 361 LEU LYS HIS GLU ALA PHE PRO GLU GLN ASN TYR ILE VAL SEQRES 28 A 361 ARG GLU GLY LYS LEU ALA SER GLN TYR LEU HET NAD A 501 44 HET AZI A 502 3 HET AZI A 503 3 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM AZI AZIDE ION FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 AZI 2(N3 1-) FORMUL 5 HOH *123(H2 O) HELIX 1 AA1 ALA A 48 GLU A 52 5 5 HELIX 2 AA2 ALA A 63 ASN A 69 5 7 HELIX 3 AA3 ASN A 78 GLY A 81 5 4 HELIX 4 AA4 ILE A 82 SER A 88 1 7 HELIX 5 AA5 SER A 104 LEU A 110 1 7 HELIX 6 AA6 ALA A 111 ALA A 113 5 3 HELIX 7 AA7 THR A 127 ALA A 134 1 8 HELIX 8 AA8 ASP A 151 LYS A 158 1 8 HELIX 9 AA9 ASN A 169 ARG A 186 1 18 HELIX 10 AB1 ASN A 187 GLU A 197 1 11 HELIX 11 AB2 VAL A 202 HIS A 207 1 6 HELIX 12 AB3 GLY A 223 LYS A 234 1 12 HELIX 13 AB4 GLY A 235 GLY A 237 5 3 HELIX 14 AB5 GLY A 250 LEU A 257 1 8 HELIX 15 AB6 ASP A 264 SER A 270 1 7 HELIX 16 AB7 ASN A 290 LYS A 296 1 7 HELIX 17 AB8 ARG A 308 ALA A 312 5 5 HELIX 18 AB9 ASP A 313 GLY A 324 1 12 HELIX 19 AC1 HIS A 343 TYR A 347 5 5 HELIX 20 AC2 ILE A 357 THR A 360 5 4 HELIX 21 AC3 THR A 361 LYS A 381 1 21 HELIX 22 AC4 PRO A 386 GLN A 388 5 3 HELIX 23 AC5 SER A 399 LEU A 402 5 4 SHEET 1 AA1 7 LYS A 92 THR A 96 0 SHEET 2 AA1 7 LYS A 55 VAL A 59 1 N ILE A 56 O LYS A 92 SHEET 3 AA1 7 ILE A 115 THR A 118 1 O ILE A 115 N LEU A 57 SHEET 4 AA1 7 LEU A 139 THR A 142 1 O VAL A 141 N LEU A 116 SHEET 5 AA1 7 THR A 161 GLU A 164 1 O THR A 161 N LEU A 140 SHEET 6 AA1 7 TYR A 390 ARG A 393 -1 O ILE A 391 N VAL A 162 SHEET 7 AA1 7 LYS A 396 LEU A 397 -1 O LYS A 396 N ARG A 393 SHEET 1 AA2 7 CYS A 259 ARG A 261 0 SHEET 2 AA2 7 MET A 241 TYR A 244 1 N MET A 241 O LYS A 260 SHEET 3 AA2 7 VAL A 217 VAL A 220 1 N VAL A 217 O LEU A 242 SHEET 4 AA2 7 VAL A 274 VAL A 277 1 O VAL A 276 N VAL A 220 SHEET 5 AA2 7 ALA A 301 ASN A 305 1 O TYR A 302 N VAL A 275 SHEET 6 AA2 7 LEU A 326 GLY A 331 1 O GLY A 330 N ASN A 305 SHEET 7 AA2 7 HIS A 351 MET A 353 1 O ALA A 352 N TYR A 329 CISPEP 1 GLN A 337 PRO A 338 0 -9.01 SITE 1 AC1 29 PHE A 121 ASN A 169 VAL A 170 VAL A 173 SITE 2 AC1 29 GLY A 223 ARG A 224 ILE A 225 ASP A 245 SITE 3 AC1 29 ARG A 246 ASN A 247 THR A 279 PRO A 280 SITE 4 AC1 29 GLN A 284 ASN A 306 ALA A 307 ARG A 308 SITE 5 AC1 29 ASP A 332 HIS A 356 SER A 358 GLY A 359 SITE 6 AC1 29 GLN A 400 TYR A 401 AZI A 502 HOH A 617 SITE 7 AC1 29 HOH A 627 HOH A 631 HOH A 651 HOH A 653 SITE 8 AC1 29 HOH A 660 SITE 1 AC2 8 PRO A 120 PHE A 121 GLY A 144 VAL A 145 SITE 2 AC2 8 ASN A 169 ARG A 308 HIS A 356 NAD A 501 SITE 1 AC3 7 LEU A 116 THR A 118 LEU A 140 VAL A 141 SITE 2 AC3 7 THR A 142 VAL A 162 SER A 163 CRYST1 68.360 68.360 203.440 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014628 0.008446 0.000000 0.00000 SCALE2 0.000000 0.016891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004915 0.00000