HEADER MEMBRANE PROTEIN 30-OCT-20 7ATE TITLE CYTOCHROME C OXIDASE STRUCTURE IN P-STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C OXIDASE SUBUNIT 1-BETA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOCHROME AA3 SUBUNIT 1-BETA,CYTOCHROME C OXIDASE COMPND 5 POLYPEPTIDE I-BETA; COMPND 6 EC: 7.1.1.9; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: CYTOCHROME C OXIDASE SUBUNIT 2; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: CYTOCHROME AA3 SUBUNIT 2,CYTOCHROME C OXIDASE POLYPEPTIDE COMPND 11 II,OXIDASE AA(3) SUBUNIT 2; COMPND 12 EC: 7.1.1.9; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: CYTOCHROME C OXIDASE SUBUNIT 3; COMPND 15 CHAIN: C; COMPND 16 SYNONYM: CYTOCHROME AA3 SUBUNIT 3,CYTOCHROME C OXIDASE POLYPEPTIDE COMPND 17 III,OXIDASE AA(3) SUBUNIT 3; COMPND 18 EC: 7.1.1.9; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: CYTOCHROME C OXIDASE SUBUNIT 4; COMPND 21 CHAIN: D; COMPND 22 SYNONYM: CYTOCHROME AA3 SUBUNIT 4,CYTOCHROME C OXIDASE POLYPEPTIDE COMPND 23 IV; COMPND 24 EC: 7.1.1.9 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 266; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 6 ORGANISM_TAXID: 266; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 9 ORGANISM_TAXID: 266; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: PARACOCCUS DENITRIFICANS; SOURCE 12 ORGANISM_TAXID: 266 KEYWDS TERMINAL OXIDASE CYTOCHROME C OXIDASE AA3 OXIDASE, MEMBRANE PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR F.KOLBE,S.SAFARIAN,H.MICHEL REVDAT 1 01-DEC-21 7ATE 0 JRNL AUTH F.KOLBE,S.SAFARIAN,H.MICHEL JRNL TITL CYTOCHROME C OXIDASE STRUCTURE IN P-STATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EPU, CTFFIND, UCSF CHIMERA, RELION, REMARK 3 RELION, RELION, RELION, COOT REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 3HB3 REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.400 REMARK 3 NUMBER OF PARTICLES : 268222 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7ATE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292112065. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : CYTOCHROME C OXIDASE WITH FOUR REMARK 245 SUBUNITS RECONSTITUTED IN LIPID REMARK 245 NANODISC REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : 4 SECOND BEFORE PLUNGING REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 3000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -242.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 HIS A 7 REMARK 465 GLY A 8 REMARK 465 HIS A 9 REMARK 465 GLY A 10 REMARK 465 ASP A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 ASP A 14 REMARK 465 THR A 15 REMARK 465 ARG A 16 REMARK 465 ARG A 554 REMARK 465 ALA A 555 REMARK 465 HIS A 556 REMARK 465 ALA A 557 REMARK 465 HIS A 558 REMARK 465 MET B -28 REMARK 465 MET B -27 REMARK 465 ALA B -26 REMARK 465 ILE B -25 REMARK 465 ALA B -24 REMARK 465 THR B -23 REMARK 465 LYS B -22 REMARK 465 ARG B -21 REMARK 465 ARG B -20 REMARK 465 GLY B -19 REMARK 465 VAL B -18 REMARK 465 ALA B -17 REMARK 465 ALA B -16 REMARK 465 VAL B -15 REMARK 465 MET B -14 REMARK 465 SER B -13 REMARK 465 LEU B -12 REMARK 465 GLY B -11 REMARK 465 VAL B -10 REMARK 465 ALA B -9 REMARK 465 THR B -8 REMARK 465 MET B -7 REMARK 465 THR B -6 REMARK 465 ALA B -5 REMARK 465 VAL B -4 REMARK 465 PRO B -3 REMARK 465 ALA B -2 REMARK 465 LEU B -1 REMARK 465 ALA B 0 REMARK 465 GLN B 1 REMARK 465 ASP B 253 REMARK 465 ALA B 254 REMARK 465 SER B 255 REMARK 465 ASP B 256 REMARK 465 TYR B 257 REMARK 465 LEU B 258 REMARK 465 PRO B 259 REMARK 465 ALA B 260 REMARK 465 SER B 261 REMARK 465 PRO B 262 REMARK 465 VAL B 263 REMARK 465 LYS B 264 REMARK 465 LEU B 265 REMARK 465 ALA B 266 REMARK 465 SER B 267 REMARK 465 ALA B 268 REMARK 465 GLU B 269 REMARK 465 MET C 0 REMARK 465 ALA C 1 REMARK 465 HIS C 2 REMARK 465 VAL C 3 REMARK 465 LYS C 4 REMARK 465 MET D 0 REMARK 465 ALA D 1 REMARK 465 SER D 2 REMARK 465 HIS D 3 REMARK 465 HIS D 4 REMARK 465 GLU D 5 REMARK 465 ILE D 6 REMARK 465 THR D 7 REMARK 465 ASP D 8 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN C 9 O05 PGV C 302 1.40 REMARK 500 NE2 HIS A 276 CE2 TYR A 280 1.61 REMARK 500 OE1 GLU A 174 O HOH A 701 1.76 REMARK 500 OD1 ASP A 404 O HOH A 702 1.93 REMARK 500 O VAL C 163 NE2 GLN C 241 2.09 REMARK 500 CD GLN C 9 O05 PGV C 302 2.11 REMARK 500 CB VAL B 38 O HOH B 438 2.12 REMARK 500 OG SER A 366 O ASN B 65 2.12 REMARK 500 O SER A 496 OG SER A 499 2.15 REMARK 500 N GLY A 154 OE1 GLU A 174 2.15 REMARK 500 O HOH B 438 O HOH B 442 2.17 REMARK 500 O ALA A 343 OG1 THR A 346 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 276 CE1 HIS A 276 NE2 -0.067 REMARK 500 HIS A 276 C HIS A 276 O -0.335 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 18 N - CA - CB ANGL. DEV. = -11.2 DEGREES REMARK 500 HIS A 276 N - CA - CB ANGL. DEV. = 12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 102 -67.64 -124.50 REMARK 500 TRP A 523 -70.98 -96.75 REMARK 500 ASN A 524 166.79 177.63 REMARK 500 TRP B 121 44.30 75.32 REMARK 500 LEU B 155 -6.70 75.93 REMARK 500 THR B 177 -87.29 -103.79 REMARK 500 PHE C 41 11.94 59.32 REMARK 500 TRP C 127 -70.54 -58.84 REMARK 500 HIS C 139 -150.53 -138.71 REMARK 500 ILE C 270 -65.91 -108.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PC1 C 301 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 605 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 56 O REMARK 620 2 GLU A 56 OE1 68.9 REMARK 620 3 HIS A 59 O 92.5 154.2 REMARK 620 4 GLY A 61 O 131.7 86.9 93.1 REMARK 620 5 GLN A 63 OE1 140.2 89.3 115.9 76.8 REMARK 620 6 HOH A 717 O 69.5 92.5 97.7 155.8 79.0 REMARK 620 7 HOH A 742 O 71.8 80.0 77.1 62.9 138.7 140.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEA A 602 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 94 NE2 REMARK 620 2 HEA A 602 NA 101.2 REMARK 620 3 HEA A 602 NB 92.1 93.1 REMARK 620 4 HEA A 602 NC 80.6 176.9 89.5 REMARK 620 5 HEA A 602 ND 85.6 89.8 176.6 87.7 REMARK 620 6 HIS A 413 NE2 170.6 86.1 93.3 91.9 88.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 604 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 276 ND1 REMARK 620 2 HIS A 325 NE2 118.1 REMARK 620 3 HIS A 326 NE2 126.3 92.8 REMARK 620 4 PEO A 606 O1 93.6 106.8 119.6 REMARK 620 5 PEO A 606 O2 94.0 131.0 96.4 30.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 601 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 403 NE2 REMARK 620 2 ASP A 404 OD2 97.4 REMARK 620 3 HOH A 782 O 86.0 173.5 REMARK 620 4 GLU B 218 OE2 167.6 87.5 88.1 REMARK 620 5 HOH B 430 O 111.7 98.5 85.3 78.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEA A 603 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 411 NE2 REMARK 620 2 HEA A 603 NA 96.1 REMARK 620 3 HEA A 603 NB 89.8 90.0 REMARK 620 4 HEA A 603 NC 95.8 168.1 90.5 REMARK 620 5 HEA A 603 ND 100.5 88.6 169.7 88.7 REMARK 620 6 PEO A 606 O1 168.6 74.1 84.5 94.2 85.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CUA B 301 CU2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 181 ND1 REMARK 620 2 CUA B 301 CU1 138.6 REMARK 620 3 CYS B 216 SG 112.0 58.9 REMARK 620 4 CYS B 220 SG 116.5 60.8 119.4 REMARK 620 5 MET B 227 SD 94.6 126.4 102.7 107.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CUA B 301 CU1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 216 SG REMARK 620 2 CUA B 301 CU2 59.3 REMARK 620 3 GLU B 218 O 101.7 111.6 REMARK 620 4 CYS B 220 SG 115.6 56.7 106.2 REMARK 620 5 HIS B 224 ND1 135.6 144.9 97.0 96.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-11921 RELATED DB: EMDB REMARK 900 CYTOCHROME C OXIDASE STRUCTURE IN P-STATE DBREF 7ATE A 1 558 UNP P98002 COX1B_PARDE 1 558 DBREF 7ATE B -28 269 UNP P08306 COX2_PARDE 1 298 DBREF 7ATE C 0 273 UNP P06030 COX3_PARDE 1 274 DBREF 7ATE D 0 49 UNP P77921 COX4_PARDE 1 50 SEQRES 1 A 558 MET ALA ASP ALA ALA VAL HIS GLY HIS GLY ASP HIS HIS SEQRES 2 A 558 ASP THR ARG GLY PHE PHE THR ARG TRP PHE MET SER THR SEQRES 3 A 558 ASN HIS LYS ASP ILE GLY ILE LEU TYR LEU PHE THR ALA SEQRES 4 A 558 GLY ILE VAL GLY LEU ILE SER VAL CYS PHE THR VAL TYR SEQRES 5 A 558 MET ARG MET GLU LEU GLN HIS PRO GLY VAL GLN TYR MET SEQRES 6 A 558 CYS LEU GLU GLY ALA ARG LEU ILE ALA ASP ALA SER ALA SEQRES 7 A 558 GLU CYS THR PRO ASN GLY HIS LEU TRP ASN VAL MET ILE SEQRES 8 A 558 THR TYR HIS GLY VAL LEU MET MET PHE PHE VAL VAL ILE SEQRES 9 A 558 PRO ALA LEU PHE GLY GLY PHE GLY ASN TYR PHE MET PRO SEQRES 10 A 558 LEU HIS ILE GLY ALA PRO ASP MET ALA PHE PRO ARG LEU SEQRES 11 A 558 ASN ASN LEU SER TYR TRP MET TYR VAL CYS GLY VAL ALA SEQRES 12 A 558 LEU GLY VAL ALA SER LEU LEU ALA PRO GLY GLY ASN ASP SEQRES 13 A 558 GLN MET GLY SER GLY VAL GLY TRP VAL LEU TYR PRO PRO SEQRES 14 A 558 LEU SER THR THR GLU ALA GLY TYR SER MET ASP LEU ALA SEQRES 15 A 558 ILE PHE ALA VAL HIS VAL SER GLY ALA SER SER ILE LEU SEQRES 16 A 558 GLY ALA ILE ASN ILE ILE THR THR PHE LEU ASN MET ARG SEQRES 17 A 558 ALA PRO GLY MET THR LEU PHE LYS VAL PRO LEU PHE ALA SEQRES 18 A 558 TRP SER VAL PHE ILE THR ALA TRP LEU ILE LEU LEU SER SEQRES 19 A 558 LEU PRO VAL LEU ALA GLY ALA ILE THR MET LEU LEU MET SEQRES 20 A 558 ASP ARG ASN PHE GLY THR GLN PHE PHE ASP PRO ALA GLY SEQRES 21 A 558 GLY GLY ASP PRO VAL LEU TYR GLN HIS ILE LEU TRP PHE SEQRES 22 A 558 PHE GLY HIS PRO GLU VAL TYR ILE ILE ILE LEU PRO GLY SEQRES 23 A 558 PHE GLY ILE ILE SER HIS VAL ILE SER THR PHE ALA LYS SEQRES 24 A 558 LYS PRO ILE PHE GLY TYR LEU PRO MET VAL LEU ALA MET SEQRES 25 A 558 ALA ALA ILE GLY ILE LEU GLY PHE VAL VAL TRP ALA HIS SEQRES 26 A 558 HIS MET TYR THR ALA GLY MET SER LEU THR GLN GLN ALA SEQRES 27 A 558 TYR PHE MET LEU ALA THR MET THR ILE ALA VAL PRO THR SEQRES 28 A 558 GLY ILE LYS VAL PHE SER TRP ILE ALA THR MET TRP GLY SEQRES 29 A 558 GLY SER ILE GLU PHE LYS THR PRO MET LEU TRP ALA PHE SEQRES 30 A 558 GLY PHE LEU PHE LEU PHE THR VAL GLY GLY VAL THR GLY SEQRES 31 A 558 VAL VAL LEU SER GLN ALA PRO LEU ASP ARG VAL TYR HIS SEQRES 32 A 558 ASP THR TYR TYR VAL VAL ALA HIS PHE HIS TYR VAL MET SEQRES 33 A 558 SER LEU GLY ALA VAL PHE GLY ILE PHE ALA GLY VAL TYR SEQRES 34 A 558 TYR TRP ILE GLY LYS MET SER GLY ARG GLN TYR PRO GLU SEQRES 35 A 558 TRP ALA GLY GLN LEU HIS PHE TRP MET MET PHE ILE GLY SEQRES 36 A 558 SER ASN LEU ILE PHE PHE PRO GLN HIS PHE LEU GLY ARG SEQRES 37 A 558 GLN GLY MET PRO ARG ARG TYR ILE ASP TYR PRO VAL GLU SEQRES 38 A 558 PHE ALA TYR TRP ASN ASN ILE SER SER ILE GLY ALA TYR SEQRES 39 A 558 ILE SER PHE ALA SER PHE LEU PHE PHE ILE GLY ILE VAL SEQRES 40 A 558 PHE TYR THR LEU PHE ALA GLY LYS ARG VAL ASN VAL PRO SEQRES 41 A 558 ASN TYR TRP ASN GLU HIS ALA ASP THR LEU GLU TRP THR SEQRES 42 A 558 LEU PRO SER PRO PRO PRO GLU HIS THR PHE GLU THR LEU SEQRES 43 A 558 PRO LYS ARG GLU ASP TRP ASP ARG ALA HIS ALA HIS SEQRES 1 B 298 MET MET ALA ILE ALA THR LYS ARG ARG GLY VAL ALA ALA SEQRES 2 B 298 VAL MET SER LEU GLY VAL ALA THR MET THR ALA VAL PRO SEQRES 3 B 298 ALA LEU ALA GLN ASP VAL LEU GLY ASP LEU PRO VAL ILE SEQRES 4 B 298 GLY LYS PRO VAL ASN GLY GLY MET ASN PHE GLN PRO ALA SEQRES 5 B 298 SER SER PRO LEU ALA HIS ASP GLN GLN TRP LEU ASP HIS SEQRES 6 B 298 PHE VAL LEU TYR ILE ILE THR ALA VAL THR ILE PHE VAL SEQRES 7 B 298 CYS LEU LEU LEU LEU ILE CYS ILE VAL ARG PHE ASN ARG SEQRES 8 B 298 ARG ALA ASN PRO VAL PRO ALA ARG PHE THR HIS ASN THR SEQRES 9 B 298 PRO ILE GLU VAL ILE TRP THR LEU VAL PRO VAL LEU ILE SEQRES 10 B 298 LEU VAL ALA ILE GLY ALA PHE SER LEU PRO ILE LEU PHE SEQRES 11 B 298 ARG SER GLN GLU MET PRO ASN ASP PRO ASP LEU VAL ILE SEQRES 12 B 298 LYS ALA ILE GLY HIS GLN TRP TYR TRP SER TYR GLU TYR SEQRES 13 B 298 PRO ASN ASP GLY VAL ALA PHE ASP ALA LEU MET LEU GLU SEQRES 14 B 298 LYS GLU ALA LEU ALA ASP ALA GLY TYR SER GLU ASP GLU SEQRES 15 B 298 TYR LEU LEU ALA THR ASP ASN PRO VAL VAL VAL PRO VAL SEQRES 16 B 298 GLY LYS LYS VAL LEU VAL GLN VAL THR ALA THR ASP VAL SEQRES 17 B 298 ILE HIS ALA TRP THR ILE PRO ALA PHE ALA VAL LYS GLN SEQRES 18 B 298 ASP ALA VAL PRO GLY ARG ILE ALA GLN LEU TRP PHE SER SEQRES 19 B 298 VAL ASP GLN GLU GLY VAL TYR PHE GLY GLN CYS SER GLU SEQRES 20 B 298 LEU CYS GLY ILE ASN HIS ALA TYR MET PRO ILE VAL VAL SEQRES 21 B 298 LYS ALA VAL SER GLN GLU LYS TYR GLU ALA TRP LEU ALA SEQRES 22 B 298 GLY ALA LYS GLU GLU PHE ALA ALA ASP ALA SER ASP TYR SEQRES 23 B 298 LEU PRO ALA SER PRO VAL LYS LEU ALA SER ALA GLU SEQRES 1 C 274 MET ALA HIS VAL LYS ASN HIS ASP TYR GLN ILE LEU PRO SEQRES 2 C 274 PRO SER ILE TRP PRO PHE PHE GLY ALA ILE GLY ALA PHE SEQRES 3 C 274 VAL MET LEU THR GLY ALA VAL ALA TRP MET LYS GLY ILE SEQRES 4 C 274 THR PHE PHE GLY LEU PRO VAL GLU GLY PRO TRP MET PHE SEQRES 5 C 274 LEU ILE GLY LEU VAL GLY VAL LEU TYR VAL MET PHE GLY SEQRES 6 C 274 TRP TRP ALA ASP VAL VAL ASN GLU GLY GLU THR GLY GLU SEQRES 7 C 274 HIS THR PRO VAL VAL ARG ILE GLY LEU GLN TYR GLY PHE SEQRES 8 C 274 ILE LEU PHE ILE MET SER GLU VAL MET PHE PHE VAL ALA SEQRES 9 C 274 TRP PHE TRP ALA PHE ILE LYS ASN ALA LEU TYR PRO MET SEQRES 10 C 274 GLY PRO ASP SER PRO ILE LYS ASP GLY VAL TRP PRO PRO SEQRES 11 C 274 GLU GLY ILE VAL THR PHE ASP PRO TRP HIS LEU PRO LEU SEQRES 12 C 274 ILE ASN THR LEU ILE LEU LEU LEU SER GLY VAL ALA VAL SEQRES 13 C 274 THR TRP ALA HIS HIS ALA PHE VAL LEU GLU GLY ASP ARG SEQRES 14 C 274 LYS THR THR ILE ASN GLY LEU ILE VAL ALA VAL ILE LEU SEQRES 15 C 274 GLY VAL CYS PHE THR GLY LEU GLN ALA TYR GLU TYR SER SEQRES 16 C 274 HIS ALA ALA PHE GLY LEU ALA ASP THR VAL TYR ALA GLY SEQRES 17 C 274 ALA PHE TYR MET ALA THR GLY PHE HIS GLY ALA HIS VAL SEQRES 18 C 274 ILE ILE GLY THR ILE PHE LEU PHE VAL CYS LEU ILE ARG SEQRES 19 C 274 LEU LEU LYS GLY GLN MET THR GLN LYS GLN HIS VAL GLY SEQRES 20 C 274 PHE GLU ALA ALA ALA TRP TYR TRP HIS PHE VAL ASP VAL SEQRES 21 C 274 VAL TRP LEU PHE LEU PHE VAL VAL ILE TYR ILE TRP GLY SEQRES 22 C 274 ARG SEQRES 1 D 50 MET ALA SER HIS HIS GLU ILE THR ASP HIS LYS HIS GLY SEQRES 2 D 50 GLU MET ASP ILE ARG HIS GLN GLN ALA THR PHE ALA GLY SEQRES 3 D 50 PHE ILE LYS GLY ALA THR TRP VAL SER ILE LEU SER ILE SEQRES 4 D 50 ALA VAL LEU VAL PHE LEU ALA LEU ALA ASN SER HET MN A 601 1 HET HEA A 602 60 HET HEA A 603 60 HET CU A 604 1 HET CA A 605 1 HET PEO A 606 2 HET CUA B 301 2 HET PC1 C 301 42 HET PGV C 302 51 HETNAM MN MANGANESE (II) ION HETNAM HEA HEME-A HETNAM CU COPPER (II) ION HETNAM CA CALCIUM ION HETNAM PEO HYDROGEN PEROXIDE HETNAM CUA DINUCLEAR COPPER ION HETNAM PC1 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETNAM PGV (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY) HETNAM 2 PGV PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)- HETNAM 3 PGV OCTADEC-11-ENOATE HETSYN PC1 3-SN-PHOSPHATIDYLCHOLINE HETSYN PGV PHOSPHATIDYLGLYCEROL; 2-VACCENOYL-1-PALMITOYL-SN- HETSYN 2 PGV GLYCEROL-3-PHOSPHOGLYCEROL FORMUL 5 MN MN 2+ FORMUL 6 HEA 2(C49 H56 FE N4 O6) FORMUL 8 CU CU 2+ FORMUL 9 CA CA 2+ FORMUL 10 PEO H2 O2 FORMUL 11 CUA CU2 FORMUL 12 PC1 C44 H88 N O8 P FORMUL 13 PGV C40 H77 O10 P FORMUL 14 HOH *145(H2 O) HELIX 1 AA1 PHE A 18 PHE A 23 1 6 HELIX 2 AA2 ASN A 27 GLN A 58 1 32 HELIX 3 AA3 ASN A 83 VAL A 102 1 20 HELIX 4 AA4 VAL A 102 PHE A 108 1 7 HELIX 5 AA5 GLY A 110 GLY A 121 1 12 HELIX 6 AA6 PHE A 127 LEU A 150 1 24 HELIX 7 AA7 GLY A 153 GLN A 157 5 5 HELIX 8 AA8 TYR A 177 MET A 207 1 31 HELIX 9 AA9 THR A 213 VAL A 217 5 5 HELIX 10 AB1 PRO A 218 GLY A 252 1 35 HELIX 11 AB2 ASP A 257 GLY A 261 5 5 HELIX 12 AB3 ASP A 263 LYS A 299 1 37 HELIX 13 AB4 GLY A 304 GLY A 319 1 16 HELIX 14 AB5 PHE A 320 VAL A 321 5 2 HELIX 15 AB6 VAL A 322 TYR A 328 5 7 HELIX 16 AB7 SER A 333 TRP A 363 1 31 HELIX 17 AB8 LYS A 370 GLN A 395 1 26 HELIX 18 AB9 GLN A 395 HIS A 403 1 9 HELIX 19 AC1 THR A 405 SER A 417 1 13 HELIX 20 AC2 GLY A 419 GLY A 437 1 19 HELIX 21 AC3 PRO A 441 GLN A 469 1 29 HELIX 22 AC4 PRO A 479 GLU A 481 5 3 HELIX 23 AC5 PHE A 482 GLY A 514 1 33 HELIX 24 AC6 THR A 529 LEU A 534 5 6 HELIX 25 AC7 LYS A 548 ASP A 553 1 6 HELIX 26 AC8 SER B 25 PHE B 60 1 36 HELIX 27 AC9 ASN B 74 GLU B 105 1 32 HELIX 28 AD1 PRO B 128 GLY B 131 5 4 HELIX 29 AD2 ALA B 143 GLY B 148 1 6 HELIX 30 AD3 SER B 150 TYR B 154 5 5 HELIX 31 AD4 PRO B 186 ALA B 189 5 4 HELIX 32 AD5 ASN B 223 TYR B 226 5 4 HELIX 33 AD6 SER B 235 PHE B 250 1 16 HELIX 34 AD7 ILE C 15 LYS C 36 1 22 HELIX 35 AD8 PRO C 48 THR C 75 1 28 HELIX 36 AD9 THR C 79 TYR C 114 1 36 HELIX 37 AE1 HIS C 139 LEU C 164 1 26 HELIX 38 AE2 ASP C 167 HIS C 195 1 29 HELIX 39 AE3 THR C 203 GLY C 237 1 35 HELIX 40 AE4 HIS C 244 ILE C 268 1 25 HELIX 41 AE5 ILE D 16 SER D 49 1 34 SHEET 1 AA1 2 ARG A 438 GLN A 439 0 SHEET 2 AA1 2 LYS A 515 ARG A 516 -1 O LYS A 515 N GLN A 439 SHEET 1 AA2 4 VAL B 9 GLY B 11 0 SHEET 2 AA2 4 GLY B 210 GLN B 215 1 O VAL B 211 N GLY B 11 SHEET 3 AA2 4 PRO B 228 VAL B 234 -1 O VAL B 231 N TYR B 212 SHEET 4 AA2 4 VAL B 162 PRO B 165 1 N VAL B 162 O VAL B 230 SHEET 1 AA3 5 VAL B 132 ALA B 136 0 SHEET 2 AA3 5 TYR B 122 TYR B 127 -1 N TRP B 123 O ALA B 136 SHEET 3 AA3 5 LEU B 112 HIS B 119 -1 N LYS B 115 O GLU B 126 SHEET 4 AA3 5 VAL B 170 ALA B 176 1 O GLN B 173 N ALA B 116 SHEET 5 AA3 5 ALA B 200 PHE B 204 -1 O PHE B 204 N VAL B 170 SHEET 1 AA4 2 HIS B 181 ILE B 185 0 SHEET 2 AA4 2 VAL B 190 ALA B 194 -1 O ALA B 194 N HIS B 181 SSBOND 1 CYS A 66 CYS A 80 1555 1555 2.04 LINK O GLU A 56 CA CA A 605 1555 1555 2.62 LINK OE1 GLU A 56 CA CA A 605 1555 1555 2.78 LINK O HIS A 59 CA CA A 605 1555 1555 2.37 LINK O GLY A 61 CA CA A 605 1555 1555 2.39 LINK OE1 GLN A 63 CA CA A 605 1555 1555 2.39 LINK NE2 HIS A 94 FE HEA A 602 1555 1555 2.34 LINK ND1 HIS A 276 CU CU A 604 1555 1555 2.31 LINK NE2 HIS A 325 CU CU A 604 1555 1555 2.00 LINK NE2 HIS A 326 CU CU A 604 1555 1555 2.15 LINK NE2 HIS A 403 MN MN A 601 1555 1555 2.19 LINK OD2 ASP A 404 MN MN A 601 1555 1555 2.47 LINK NE2 HIS A 411 FE HEA A 603 1555 1555 2.50 LINK NE2 HIS A 413 FE HEA A 602 1555 1555 2.21 LINK MN MN A 601 O HOH A 782 1555 1555 2.49 LINK MN MN A 601 OE2 GLU B 218 1555 1555 2.20 LINK MN MN A 601 O HOH B 430 1555 1555 2.37 LINK FE HEA A 603 O1 PEO A 606 1555 1555 2.48 LINK CU CU A 604 O1 PEO A 606 1555 1555 2.26 LINK CU CU A 604 O2 PEO A 606 1555 1555 2.62 LINK CA CA A 605 O HOH A 717 1555 1555 2.60 LINK CA CA A 605 O HOH A 742 1555 1555 2.95 LINK ND1 HIS B 181 CU2 CUA B 301 1555 1555 2.31 LINK SG CYS B 216 CU1 CUA B 301 1555 1555 2.62 LINK SG CYS B 216 CU2 CUA B 301 1555 1555 2.63 LINK O GLU B 218 CU1 CUA B 301 1555 1555 2.34 LINK SG CYS B 220 CU1 CUA B 301 1555 1555 2.65 LINK SG CYS B 220 CU2 CUA B 301 1555 1555 2.54 LINK ND1 HIS B 224 CU1 CUA B 301 1555 1555 2.29 LINK SD MET B 227 CU2 CUA B 301 1555 1555 2.62 CISPEP 1 PRO A 168 PRO A 169 0 -0.15 CISPEP 2 SER A 536 PRO A 537 0 -3.74 CISPEP 3 SER C 120 PRO C 121 0 -0.96 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000