HEADER HYDROLASE 03-NOV-20 7AUK TITLE YEAST DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE DDP1 IN COMPLEX TITLE 2 WITH 5-INSP7 COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE DDP1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: DIADENOSINE 5',5'''-P1,P6-HEXAPHOSPHATE HYDROLASE,AP6A COMPND 5 HYDROLASE,DIADENOSINE AND DIPHOSPHOINOSITOL POLYPHOSPHATE COMPND 6 PHOSPHOHYDROLASE 1,DIADENOSINE HEXAPHOSPHATE HYDROLASE (AMP-FORMING); COMPND 7 EC: 3.6.1.52,3.6.1.60; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: GGS IS A REST OF PURIFICATION LINKER, PROTEIN STARTS COMPND 10 IN MGK. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE (STRAIN ATCC 204508 / SOURCE 3 S288C); SOURCE 4 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 5 ORGANISM_TAXID: 559292; SOURCE 6 STRAIN: ATCC 204508 / S288C; SOURCE 7 GENE: DDP1, YOR163W, O3575; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: ROSSETTA2(DE3); SOURCE 11 EXPRESSION_SYSTEM_VECTOR_TYPE: PET28A(+); SOURCE 12 EXPRESSION_SYSTEM_PLASMID: PKLSLT KEYWDS INOSITOL, PP-INSP, PYROPHOSPHATASE, POLYPHOSPHATE, DIADENOSINE KEYWDS 2 POLYPHOSPHATE, DDP1, NUDIX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.A.MARQUEZ-MONINO,B.GONZALEZ REVDAT 2 31-JAN-24 7AUK 1 REMARK REVDAT 1 19-MAY-21 7AUK 0 JRNL AUTH M.A.MARQUEZ-MONINO,R.ORTEGA-GARCIA,M.L.SHIPTON, JRNL AUTH 2 E.FRANCO-ECHEVARRIA,A.M.RILEY,J.SANZ-APARICIO,B.V.L.POTTER, JRNL AUTH 3 B.GONZALEZ JRNL TITL MULTIPLE SUBSTRATE RECOGNITION BY YEAST DIADENOSINE AND JRNL TITL 2 DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE THROUGH JRNL TITL 3 PHOSPHATE CLAMPING. JRNL REF SCI ADV V. 7 2021 JRNL REFN ESSN 2375-2548 JRNL PMID 33893105 JRNL DOI 10.1126/SCIADV.ABF6744 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 13825 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.300 REMARK 3 FREE R VALUE TEST SET COUNT : 767 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1004 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.2270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1367 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 49 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.95 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.67000 REMARK 3 B22 (A**2) : -1.67000 REMARK 3 B33 (A**2) : 5.41000 REMARK 3 B12 (A**2) : -0.83000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.203 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.180 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.171 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.953 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1436 ; 0.005 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 1316 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1950 ; 1.287 ; 1.675 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3077 ; 1.131 ; 1.588 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 167 ; 6.414 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 80 ;29.890 ;22.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 265 ;15.774 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.013 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 187 ; 0.052 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1537 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 280 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 201 REMARK 3 ORIGIN FOR THE GROUP (A): 14.1614 -21.6930 -2.1536 REMARK 3 T TENSOR REMARK 3 T11: 0.5596 T22: 0.2859 REMARK 3 T33: 0.0114 T12: -0.2496 REMARK 3 T13: -0.0104 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 2.3474 L22: 1.6261 REMARK 3 L33: 1.2159 L12: 0.9247 REMARK 3 L13: 0.6140 L23: -0.2193 REMARK 3 S TENSOR REMARK 3 S11: 0.4262 S12: -0.1551 S13: 0.0722 REMARK 3 S21: 0.4585 S22: -0.3729 S23: 0.0065 REMARK 3 S31: 0.1487 S32: -0.1770 S33: -0.0533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7AUK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292111229. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALBA REMARK 200 BEAMLINE : XALOC REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979260 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL-CUT, CRYOCOOLED REMARK 200 OPTICS : KB FOCUSING MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14627 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 47.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 17.60 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.00 REMARK 200 R MERGE FOR SHELL (I) : 0.65300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: 7AUI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1 M SODIUM ACETATE PH REMARK 280 4.5, 0.1 M NACL. PROTEIN BUFFER: 20 MM TRIS PH 8.0, 150 MM NACL, REMARK 280 1 MM DTT, 10 MM 5-INSP7., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.40533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.70267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.70267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 63.40533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 342 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 348 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 LYS A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 ASP A 6 REMARK 465 ASN A 7 REMARK 465 HIS A 8 REMARK 465 GLY A 9 REMARK 465 PRO A 10 REMARK 465 VAL A 11 REMARK 465 ARG A 12 REMARK 465 SER A 13 REMARK 465 GLU A 14 REMARK 465 THR A 15 REMARK 465 ALA A 16 REMARK 465 ARG A 17 REMARK 465 GLU A 18 REMARK 465 GLY A 19 REMARK 465 LYS A 188 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 101 38.56 -96.20 REMARK 500 ASN A 108 -15.47 85.59 REMARK 500 GLN A 113 -52.62 -135.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue I7P A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7AUI RELATED DB: PDB REMARK 900 RELATED ID: 7AUJ RELATED DB: PDB DBREF 7AUK A 1 188 UNP Q99321 DDP1_YEAST 1 188 SEQADV 7AUK GLY A -2 UNP Q99321 EXPRESSION TAG SEQADV 7AUK GLY A -1 UNP Q99321 EXPRESSION TAG SEQADV 7AUK SER A 0 UNP Q99321 EXPRESSION TAG SEQRES 1 A 191 GLY GLY SER MET GLY LYS THR ALA ASP ASN HIS GLY PRO SEQRES 2 A 191 VAL ARG SER GLU THR ALA ARG GLU GLY ARG GLU ASN GLN SEQRES 3 A 191 VAL TYR SER PRO VAL THR GLY ALA ARG LEU VAL ALA GLY SEQRES 4 A 191 CYS ILE CYS LEU THR PRO ASP LYS LYS GLN VAL LEU MET SEQRES 5 A 191 ILE THR SER SER ALA HIS LYS LYS ARG TRP ILE VAL PRO SEQRES 6 A 191 LYS GLY GLY VAL GLU LYS ASP GLU PRO ASN TYR GLU THR SEQRES 7 A 191 THR ALA GLN ARG GLU THR TRP GLU GLU ALA GLY CYS ILE SEQRES 8 A 191 GLY LYS ILE VAL ALA ASN LEU GLY THR VAL GLU ASP MET SEQRES 9 A 191 ARG PRO PRO LYS ASP TRP ASN LYS ASP ILE LYS GLN PHE SEQRES 10 A 191 GLU ASN SER ARG LYS ASP SER GLU VAL ALA LYS HIS PRO SEQRES 11 A 191 PRO ARG THR GLU PHE HIS PHE TYR GLU LEU GLU ILE GLU SEQRES 12 A 191 ASN LEU LEU ASP LYS PHE PRO GLU CYS HIS LYS ARG HIS SEQRES 13 A 191 ARG LYS LEU TYR SER TYR THR GLU ALA LYS GLN ASN LEU SEQRES 14 A 191 ILE ASP ALA LYS ARG PRO GLU LEU LEU GLU ALA LEU ASN SEQRES 15 A 191 ARG SER ALA ILE ILE LYS ASP ASP LYS HET I7P A 201 40 HETNAM I7P (1R,2R,3S,4S,5R,6S)-2,3,4,5,6-PENTAKIS(PHOSPHONOOXY) HETNAM 2 I7P CYCLOHEXYL TRIHYDROGEN DIPHOSPHATE HETSYN I7P 1D-MYO-INOSITOL 5-DIPHOSPHATE 1,2,3,4,6- HETSYN 2 I7P PENTAKISPHOSPHATE FORMUL 2 I7P C6 H19 O27 P7 FORMUL 3 HOH *49(H2 O) HELIX 1 AA1 ASN A 72 GLY A 86 1 15 HELIX 2 AA2 TYR A 159 ALA A 169 1 11 HELIX 3 AA3 ARG A 171 SER A 181 1 11 SHEET 1 AA1 4 LYS A 63 GLY A 65 0 SHEET 2 AA1 4 ARG A 32 LEU A 40 -1 N ALA A 35 O GLY A 64 SHEET 3 AA1 4 THR A 130 LEU A 142 1 O LEU A 137 N LEU A 40 SHEET 4 AA1 4 CYS A 87 ASP A 100 -1 N VAL A 98 O PHE A 132 SHEET 1 AA2 3 TRP A 59 ILE A 60 0 SHEET 2 AA2 3 GLN A 46 THR A 51 -1 N ILE A 50 O ILE A 60 SHEET 3 AA2 3 ARG A 154 SER A 158 -1 O LYS A 155 N MET A 49 SHEET 1 AA3 2 PHE A 114 ASN A 116 0 SHEET 2 AA3 2 SER A 121 VAL A 123 -1 O GLU A 122 N GLU A 115 SITE 1 AC1 25 ARG A 32 SER A 52 SER A 53 ILE A 60 SITE 2 AC1 25 LYS A 63 GLY A 64 GLU A 84 ARG A 102 SITE 3 AC1 25 ARG A 129 ARG A 152 ARG A 171 HOH A 301 SITE 4 AC1 25 HOH A 302 HOH A 303 HOH A 306 HOH A 307 SITE 5 AC1 25 HOH A 313 HOH A 319 HOH A 320 HOH A 324 SITE 6 AC1 25 HOH A 325 HOH A 332 HOH A 333 HOH A 335 SITE 7 AC1 25 HOH A 338 CRYST1 61.526 61.526 95.108 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016253 0.009384 0.000000 0.00000 SCALE2 0.000000 0.018768 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010514 0.00000