HEADER LIPID BINDING PROTEIN 25-NOV-20 7B1L TITLE CRYSTAL STRUCTURE OF PHOSPHATIDYL SERINE SYNTHASE (PSS) IN THE CLOSED TITLE 2 CONFORMATION WITH BOUND CITRATE. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CDP-DIACYLGLYCEROL--SERINE O-PHOSPHATIDYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PHOSPHATIDYLSERINE SYNTHASE; COMPND 5 EC: 2.7.8.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII (STRAIN ATCC SOURCE 3 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440); SOURCE 4 ORGANISM_TAXID: 243232; SOURCE 5 STRAIN: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440; SOURCE 6 GENE: PSSA, MJ1212; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MEMBRANE PROTEIN, LIPID SYNTHASE, LIPID BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.YILDIZ,M.CENTOLA REVDAT 1 08-DEC-21 7B1L 0 JRNL AUTH M.CENTOLA,H.BETZ,O.YILDIZ JRNL TITL CRYSTAL STRUCTURES OF PHOSPHATIDYL SERINE SYNTHASE PSS JRNL TITL 2 REVEAL THE CATALYTIC MECHANISM OF CDP-DAG ALCOHOL JRNL TITL 3 O-PHOSPHATIDYL TRANSFERASES JRNL REF NAT COMMUN V. 12 6982 2021 JRNL REFN ESSN 2041-1723 JRNL DOI 10.1038/S41467-021-27281-W REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19RC5_4047 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 39610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.301 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3721 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.7100 - 5.5500 0.97 2639 138 0.3058 0.3832 REMARK 3 2 5.5500 - 4.4100 0.98 2664 140 0.2900 0.3043 REMARK 3 3 4.4100 - 3.8500 0.97 2614 143 0.2649 0.3219 REMARK 3 4 3.8500 - 3.5000 0.98 2697 140 0.2488 0.2485 REMARK 3 5 3.5000 - 3.2500 0.99 2648 145 0.2348 0.2742 REMARK 3 6 3.2500 - 3.0600 0.98 2686 139 0.2491 0.2506 REMARK 3 7 3.0600 - 2.9000 0.98 2661 145 0.2385 0.2857 REMARK 3 8 2.9000 - 2.7800 0.98 2643 145 0.2209 0.2619 REMARK 3 9 2.7800 - 2.6700 0.99 2684 138 0.2324 0.2657 REMARK 3 10 2.6700 - 2.5800 0.98 2639 143 0.2281 0.2736 REMARK 3 11 2.5800 - 2.5000 0.98 2687 141 0.2298 0.3326 REMARK 3 12 2.5000 - 2.4300 0.98 2653 138 0.2372 0.2836 REMARK 3 13 2.4300 - 2.3600 0.99 2650 137 0.2271 0.2298 REMARK 3 14 2.3600 - 2.3100 0.96 2631 137 0.2267 0.2786 REMARK 3 15 2.3100 - 2.2500 0.96 2611 136 0.2416 0.2539 REMARK 3 16 2.2500 - 2.2000 0.97 2589 134 0.2447 0.3295 REMARK 3 17 2.2000 - 2.1600 0.95 2583 136 0.2425 0.3343 REMARK 3 18 2.1600 - 2.1200 0.96 2592 135 0.2504 0.2647 REMARK 3 19 2.1200 - 2.0800 0.95 2602 136 0.2582 0.3227 REMARK 3 20 2.0800 - 2.0500 0.96 2590 137 0.2748 0.2854 REMARK 3 21 2.0500 - 2.0100 0.95 2560 135 0.2862 0.2921 REMARK 3 22 2.0100 - 1.9800 0.97 2589 133 0.2970 0.4206 REMARK 3 23 1.9800 - 1.9500 0.95 2574 133 0.3342 0.3981 REMARK 3 24 1.9500 - 1.9300 0.95 2541 131 0.3493 0.4079 REMARK 3 25 1.9300 - 1.9000 0.94 2564 136 0.3745 0.3723 REMARK 3 26 1.9000 - 1.8800 0.95 2566 136 0.3931 0.3945 REMARK 3 27 1.8800 - 1.8500 0.92 2542 134 0.4213 0.4310 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.288 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 38.139 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3491 REMARK 3 ANGLE : 1.000 4664 REMARK 3 CHIRALITY : 0.055 554 REMARK 3 PLANARITY : 0.007 539 REMARK 3 DIHEDRAL : 20.777 626 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 15.3469 86.5836 18.9070 REMARK 3 T TENSOR REMARK 3 T11: 0.1516 T22: 0.1666 REMARK 3 T33: 0.1680 T12: -0.0040 REMARK 3 T13: -0.0154 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.5161 L22: 0.9070 REMARK 3 L33: 0.3450 L12: -0.0507 REMARK 3 L13: 0.0194 L23: 0.0010 REMARK 3 S TENSOR REMARK 3 S11: 0.0007 S12: 0.0429 S13: -0.0486 REMARK 3 S21: -0.0899 S22: 0.0133 S23: -0.0469 REMARK 3 S31: 0.0258 S32: 0.0113 S33: -0.0116 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7B1L COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292112409. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9999 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39735 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 936.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 1.40000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.350 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: QIAGENS MBCLASS SUIT AND MBCLASS SUIT REMARK 280 II MOLECULAR DIMENSION MEMGOLD, LIPIDIC CUBIC PHASE, TEMPERATURE REMARK 280 300K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.71000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 47.71000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18050 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -148.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 GLY A -20 REMARK 465 SER A -19 REMARK 465 SER A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 GLY A -9 REMARK 465 LEU A -8 REMARK 465 GLU A -7 REMARK 465 VAL A -6 REMARK 465 LEU A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 HIS A 0 REMARK 465 ASP A 201 REMARK 465 LEU A 202 REMARK 465 GLU A 203 REMARK 465 MSE B -21 REMARK 465 GLY B -20 REMARK 465 SER B -19 REMARK 465 SER B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 SER B -11 REMARK 465 SER B -10 REMARK 465 GLY B -9 REMARK 465 LEU B -8 REMARK 465 GLU B -7 REMARK 465 VAL B -6 REMARK 465 LEU B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 GLY B -2 REMARK 465 PRO B -1 REMARK 465 HIS B 0 REMARK 465 ASP B 201 REMARK 465 LEU B 202 REMARK 465 GLU B 203 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN B 85 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 416 O HOH A 423 2.05 REMARK 500 OH TYR B 135 O HOH B 401 2.14 REMARK 500 O ASN A 133 O HOH A 401 2.19 REMARK 500 O PHE A 113 O HOH A 402 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 2 54.56 -119.08 REMARK 500 ASN B 109 66.70 -156.08 REMARK 500 PRO B 159 103.12 -49.20 REMARK 500 ASN B 160 -179.53 -68.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 58A A 301 REMARK 610 58A B 303 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 307 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 9 OG1 REMARK 620 2 THR A 53 O 85.4 REMARK 620 3 SER A 55 OG 115.8 104.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 41 O REMARK 620 2 ASP A 41 OD1 72.9 REMARK 620 3 ASP A 44 OD1 72.0 112.0 REMARK 620 4 ASP A 62 OD1 137.3 70.3 102.9 REMARK 620 5 ASP A 62 OD2 160.2 122.1 89.5 52.3 REMARK 620 6 58A A 301 OAT 85.5 141.4 90.1 137.1 87.7 REMARK 620 7 58A A 301 OAW 110.7 86.9 160.4 88.1 84.4 71.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 308 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 41 OD1 REMARK 620 2 ASP A 62 O 153.9 REMARK 620 3 ASP A 62 OD1 78.1 81.6 REMARK 620 4 ASP A 66 OD1 93.9 87.1 130.9 REMARK 620 5 HOH A 410 O 88.2 105.5 83.1 145.7 REMARK 620 6 HOH A 415 O 92.1 111.9 160.5 66.0 79.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 309 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 9 OG1 REMARK 620 2 SER B 11 OG 58.5 REMARK 620 3 THR B 53 O 92.1 75.3 REMARK 620 4 SER B 55 OG 111.0 167.1 99.1 REMARK 620 5 58A B 303 OAA 158.6 100.2 83.4 90.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 41 OD1 REMARK 620 2 ASP B 62 O 155.1 REMARK 620 3 ASP B 62 OD1 79.7 83.6 REMARK 620 4 ASP B 66 OD1 89.7 87.1 130.3 REMARK 620 5 HOH B 410 O 88.7 109.5 89.2 139.4 REMARK 620 6 HOH B 411 O 90.5 109.7 163.1 62.6 76.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 41 O REMARK 620 2 ASP B 41 OD1 72.2 REMARK 620 3 ASP B 44 OD1 73.6 112.8 REMARK 620 4 ASP B 62 OD1 139.2 72.4 102.8 REMARK 620 5 ASP B 62 OD2 160.4 123.5 88.4 51.6 REMARK 620 6 58A B 303 OAT 90.9 146.6 88.3 129.9 80.6 REMARK 620 7 58A B 303 OAW 100.2 81.8 160.4 94.0 94.2 72.9 REMARK 620 N 1 2 3 4 5 6 DBREF 7B1L A 1 201 UNP Q58609 PSS_METJA 1 201 DBREF 7B1L B 1 201 UNP Q58609 PSS_METJA 1 201 SEQADV 7B1L MSE A -21 UNP Q58609 INITIATING METHIONINE SEQADV 7B1L GLY A -20 UNP Q58609 EXPRESSION TAG SEQADV 7B1L SER A -19 UNP Q58609 EXPRESSION TAG SEQADV 7B1L SER A -18 UNP Q58609 EXPRESSION TAG SEQADV 7B1L HIS A -17 UNP Q58609 EXPRESSION TAG SEQADV 7B1L HIS A -16 UNP Q58609 EXPRESSION TAG SEQADV 7B1L HIS A -15 UNP Q58609 EXPRESSION TAG SEQADV 7B1L HIS A -14 UNP Q58609 EXPRESSION TAG SEQADV 7B1L HIS A -13 UNP Q58609 EXPRESSION TAG SEQADV 7B1L HIS A -12 UNP Q58609 EXPRESSION TAG SEQADV 7B1L SER A -11 UNP Q58609 EXPRESSION TAG SEQADV 7B1L SER A -10 UNP Q58609 EXPRESSION TAG SEQADV 7B1L GLY A -9 UNP Q58609 EXPRESSION TAG SEQADV 7B1L LEU A -8 UNP Q58609 EXPRESSION TAG SEQADV 7B1L GLU A -7 UNP Q58609 EXPRESSION TAG SEQADV 7B1L VAL A -6 UNP Q58609 EXPRESSION TAG SEQADV 7B1L LEU A -5 UNP Q58609 EXPRESSION TAG SEQADV 7B1L PHE A -4 UNP Q58609 EXPRESSION TAG SEQADV 7B1L GLN A -3 UNP Q58609 EXPRESSION TAG SEQADV 7B1L GLY A -2 UNP Q58609 EXPRESSION TAG SEQADV 7B1L PRO A -1 UNP Q58609 EXPRESSION TAG SEQADV 7B1L HIS A 0 UNP Q58609 EXPRESSION TAG SEQADV 7B1L LEU A 202 UNP Q58609 EXPRESSION TAG SEQADV 7B1L GLU A 203 UNP Q58609 EXPRESSION TAG SEQADV 7B1L MSE B -21 UNP Q58609 INITIATING METHIONINE SEQADV 7B1L GLY B -20 UNP Q58609 EXPRESSION TAG SEQADV 7B1L SER B -19 UNP Q58609 EXPRESSION TAG SEQADV 7B1L SER B -18 UNP Q58609 EXPRESSION TAG SEQADV 7B1L HIS B -17 UNP Q58609 EXPRESSION TAG SEQADV 7B1L HIS B -16 UNP Q58609 EXPRESSION TAG SEQADV 7B1L HIS B -15 UNP Q58609 EXPRESSION TAG SEQADV 7B1L HIS B -14 UNP Q58609 EXPRESSION TAG SEQADV 7B1L HIS B -13 UNP Q58609 EXPRESSION TAG SEQADV 7B1L HIS B -12 UNP Q58609 EXPRESSION TAG SEQADV 7B1L SER B -11 UNP Q58609 EXPRESSION TAG SEQADV 7B1L SER B -10 UNP Q58609 EXPRESSION TAG SEQADV 7B1L GLY B -9 UNP Q58609 EXPRESSION TAG SEQADV 7B1L LEU B -8 UNP Q58609 EXPRESSION TAG SEQADV 7B1L GLU B -7 UNP Q58609 EXPRESSION TAG SEQADV 7B1L VAL B -6 UNP Q58609 EXPRESSION TAG SEQADV 7B1L LEU B -5 UNP Q58609 EXPRESSION TAG SEQADV 7B1L PHE B -4 UNP Q58609 EXPRESSION TAG SEQADV 7B1L GLN B -3 UNP Q58609 EXPRESSION TAG SEQADV 7B1L GLY B -2 UNP Q58609 EXPRESSION TAG SEQADV 7B1L PRO B -1 UNP Q58609 EXPRESSION TAG SEQADV 7B1L HIS B 0 UNP Q58609 EXPRESSION TAG SEQADV 7B1L LEU B 202 UNP Q58609 EXPRESSION TAG SEQADV 7B1L GLU B 203 UNP Q58609 EXPRESSION TAG SEQRES 1 A 225 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 225 LEU GLU VAL LEU PHE GLN GLY PRO HIS MSE PHE SER ILE SEQRES 3 A 225 ARG LYS ILE ILE THR ILE SER ASP TYR VAL THR MSE LEU SEQRES 4 A 225 ASN ILE ILE THR GLY LEU LEU ALA ILE LEU LEU ASN SER SEQRES 5 A 225 PHE SER LEU ILE TYR LEU SER ILE ILE PHE ASP SER LEU SEQRES 6 A 225 ASP GLY TYR VAL ALA ARG LYS THR GLY THR VAL SER ASP SEQRES 7 A 225 PHE GLY ALA GLU LEU ASP SER ILE SER ASP VAL VAL SER SEQRES 8 A 225 PHE GLY VAL ALA PRO ALA TYR LEU LEU TYR ASN ASN PHE SEQRES 9 A 225 GLU SER ASN LEU ALA LEU ILE SER ALA ILE ILE PHE CYS SEQRES 10 A 225 LEU CYS GLY ALA LEU ARG LEU ALA ARG PHE GLY ILE LEU SEQRES 11 A 225 ASN VAL LYS GLY PHE ILE GLY LEU PRO ILE PRO ALA GLY SEQRES 12 A 225 ALA LEU LEU LEU VAL GLY PHE CYS GLN LEU ILE ASN SER SEQRES 13 A 225 TYR LEU ILE ASN SER ILE LEU ALA ILE LEU ILE GLY LEU SEQRES 14 A 225 LEU MSE ILE SER ASP ILE LYS TYR PRO LYS TYR PRO ASN SEQRES 15 A 225 LYS ILE PHE ILE TYR ILE PHE ALA VAL SER LEU CYS LEU SEQRES 16 A 225 ALA ILE VAL GLY ILE PRO HIS PHE ALA LEU MSE LEU CYS SEQRES 17 A 225 LEU ILE TYR ALA ILE TYR GLY ILE ILE LYS TYR ILE ARG SEQRES 18 A 225 GLY ASP LEU GLU SEQRES 1 B 225 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 225 LEU GLU VAL LEU PHE GLN GLY PRO HIS MSE PHE SER ILE SEQRES 3 B 225 ARG LYS ILE ILE THR ILE SER ASP TYR VAL THR MSE LEU SEQRES 4 B 225 ASN ILE ILE THR GLY LEU LEU ALA ILE LEU LEU ASN SER SEQRES 5 B 225 PHE SER LEU ILE TYR LEU SER ILE ILE PHE ASP SER LEU SEQRES 6 B 225 ASP GLY TYR VAL ALA ARG LYS THR GLY THR VAL SER ASP SEQRES 7 B 225 PHE GLY ALA GLU LEU ASP SER ILE SER ASP VAL VAL SER SEQRES 8 B 225 PHE GLY VAL ALA PRO ALA TYR LEU LEU TYR ASN ASN PHE SEQRES 9 B 225 GLU SER ASN LEU ALA LEU ILE SER ALA ILE ILE PHE CYS SEQRES 10 B 225 LEU CYS GLY ALA LEU ARG LEU ALA ARG PHE GLY ILE LEU SEQRES 11 B 225 ASN VAL LYS GLY PHE ILE GLY LEU PRO ILE PRO ALA GLY SEQRES 12 B 225 ALA LEU LEU LEU VAL GLY PHE CYS GLN LEU ILE ASN SER SEQRES 13 B 225 TYR LEU ILE ASN SER ILE LEU ALA ILE LEU ILE GLY LEU SEQRES 14 B 225 LEU MSE ILE SER ASP ILE LYS TYR PRO LYS TYR PRO ASN SEQRES 15 B 225 LYS ILE PHE ILE TYR ILE PHE ALA VAL SER LEU CYS LEU SEQRES 16 B 225 ALA ILE VAL GLY ILE PRO HIS PHE ALA LEU MSE LEU CYS SEQRES 17 B 225 LEU ILE TYR ALA ILE TYR GLY ILE ILE LYS TYR ILE ARG SEQRES 18 B 225 GLY ASP LEU GLU MODRES 7B1L MSE A 1 MET MODIFIED RESIDUE MODRES 7B1L MSE A 16 MET MODIFIED RESIDUE MODRES 7B1L MSE A 149 MET MODIFIED RESIDUE MODRES 7B1L MSE A 184 MET MODIFIED RESIDUE MODRES 7B1L MSE B 1 MET MODIFIED RESIDUE MODRES 7B1L MSE B 16 MET MODIFIED RESIDUE MODRES 7B1L MSE B 149 MET MODIFIED RESIDUE MODRES 7B1L MSE B 184 MET MODIFIED RESIDUE HET MSE A 1 8 HET MSE A 16 8 HET MSE A 149 8 HET MSE A 184 8 HET MSE B 1 8 HET MSE B 16 8 HET MSE B 149 8 HET MSE B 184 8 HET 58A A 301 64 HET CA A 302 1 HET CL A 303 1 HET CL A 304 1 HET SER A 305 7 HET SER A 306 7 HET NA A 307 1 HET MG A 308 1 HET CL A 309 1 HET OLC A 310 25 HET OLC A 311 25 HET OLC A 312 25 HET OLC A 313 25 HET OLC A 314 25 HET OLC A 315 25 HET MG B 301 1 HET CL B 302 1 HET 58A B 303 64 HET CA B 304 1 HET CL B 305 1 HET CL B 306 1 HET SER B 307 7 HET SER B 308 7 HET NA B 309 1 HET OLC B 310 25 HET OLC B 311 25 HETNAM MSE SELENOMETHIONINE HETNAM 58A 5'-O-[(R)-{[(S)-{(2R)-2,3-BIS[(9E)-OCTADEC-9- HETNAM 2 58A ENOYLOXY]PROPOXY}(HYDROXY)PHOSPHORYL]OXY}(HYDROXY) HETNAM 3 58A PHOSPHORYL]CYTIDINE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM SER SERINE HETNAM NA SODIUM ION HETNAM MG MAGNESIUM ION HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN 58A CYTIDINEDIPHOSPHATE-DIOLEOYLGLYCEROL; CDP-1,2-DIOLEOYL- HETSYN 2 58A SN-GLYCEROL HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 58A 2(C48 H85 N3 O15 P2) FORMUL 4 CA 2(CA 2+) FORMUL 5 CL 6(CL 1-) FORMUL 7 SER 4(C3 H7 N O3) FORMUL 9 NA 2(NA 1+) FORMUL 10 MG 2(MG 2+) FORMUL 12 OLC 8(C21 H40 O4) FORMUL 29 HOH *101(H2 O) HELIX 1 AA1 PHE A 2 ILE A 7 5 6 HELIX 2 AA2 THR A 9 LEU A 28 1 20 HELIX 3 AA3 SER A 30 GLY A 52 1 23 HELIX 4 AA4 SER A 55 GLY A 71 1 17 HELIX 5 AA5 GLY A 71 PHE A 82 1 12 HELIX 6 AA6 SER A 84 LEU A 108 1 25 HELIX 7 AA7 PRO A 117 ILE A 132 1 16 HELIX 8 AA8 SER A 134 ILE A 150 1 17 HELIX 9 AA9 ASN A 160 VAL A 176 1 17 HELIX 10 AB1 PRO A 179 GLY A 200 1 22 HELIX 11 AB2 PHE B 2 ILE B 8 5 7 HELIX 12 AB3 THR B 9 LEU B 28 1 20 HELIX 13 AB4 SER B 30 THR B 51 1 22 HELIX 14 AB5 SER B 55 GLY B 71 1 17 HELIX 15 AB6 GLY B 71 PHE B 82 1 12 HELIX 16 AB7 SER B 84 LEU B 108 1 25 HELIX 17 AB8 PRO B 117 ILE B 132 1 16 HELIX 18 AB9 SER B 134 SER B 151 1 18 HELIX 19 AC1 ASN B 160 VAL B 176 1 17 HELIX 20 AC2 PRO B 179 GLY B 200 1 22 SHEET 1 AA1 2 PHE A 113 ILE A 114 0 SHEET 2 AA1 2 LYS A 154 TYR A 155 -1 O TYR A 155 N PHE A 113 SHEET 1 AA2 2 PHE B 113 ILE B 114 0 SHEET 2 AA2 2 LYS B 154 TYR B 155 -1 O TYR B 155 N PHE B 113 LINK C MSE A 1 N PHE A 2 1555 1555 1.33 LINK C THR A 15 N MSE A 16 1555 1555 1.34 LINK C MSE A 16 N LEU A 17 1555 1555 1.34 LINK C LEU A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N ILE A 150 1555 1555 1.33 LINK C LEU A 183 N MSE A 184 1555 1555 1.33 LINK C MSE A 184 N LEU A 185 1555 1555 1.34 LINK C MSE B 1 N PHE B 2 1555 1555 1.34 LINK C THR B 15 N MSE B 16 1555 1555 1.33 LINK C MSE B 16 N LEU B 17 1555 1555 1.34 LINK C LEU B 148 N MSE B 149 1555 1555 1.32 LINK C MSE B 149 N ILE B 150 1555 1555 1.34 LINK C LEU B 183 N MSE B 184 1555 1555 1.33 LINK C MSE B 184 N LEU B 185 1555 1555 1.34 LINK OG1 THR A 9 NA NA A 307 1555 1555 2.82 LINK O ASP A 41 CA CA A 302 1555 1555 2.52 LINK OD1 ASP A 41 CA CA A 302 1555 1555 2.44 LINK OD1 ASP A 41 MG MG A 308 1555 1555 2.45 LINK OD1 ASP A 44 CA CA A 302 1555 1555 2.42 LINK O THR A 53 NA NA A 307 1555 1555 2.67 LINK OG SER A 55 NA NA A 307 1555 1555 2.85 LINK OD1 ASP A 62 CA CA A 302 1555 1555 2.53 LINK OD2 ASP A 62 CA CA A 302 1555 1555 2.41 LINK O ASP A 62 MG MG A 308 1555 1555 2.44 LINK OD1 ASP A 62 MG MG A 308 1555 1555 2.06 LINK OD1 ASP A 66 MG MG A 308 1555 1555 2.15 LINK OAT 58A A 301 CA CA A 302 1555 1555 2.38 LINK OAW 58A A 301 CA CA A 302 1555 1555 2.53 LINK MG MG A 308 O HOH A 410 1555 1555 2.43 LINK MG MG A 308 O HOH A 415 1555 1555 2.78 LINK OG1 THR B 9 NA NA B 309 1555 1555 2.82 LINK OG SER B 11 NA NA B 309 1555 1555 3.05 LINK OD1 ASP B 41 MG MG B 301 1555 1555 2.47 LINK O ASP B 41 CA CA B 304 1555 1555 2.41 LINK OD1 ASP B 41 CA CA B 304 1555 1555 2.45 LINK OD1 ASP B 44 CA CA B 304 1555 1555 2.43 LINK O THR B 53 NA NA B 309 1555 1555 2.61 LINK OG SER B 55 NA NA B 309 1555 1555 2.60 LINK O ASP B 62 MG MG B 301 1555 1555 2.37 LINK OD1 ASP B 62 MG MG B 301 1555 1555 2.08 LINK OD1 ASP B 62 CA CA B 304 1555 1555 2.52 LINK OD2 ASP B 62 CA CA B 304 1555 1555 2.51 LINK OD1 ASP B 66 MG MG B 301 1555 1555 2.27 LINK MG MG B 301 O HOH B 410 1555 1555 2.40 LINK MG MG B 301 O HOH B 411 1555 1555 2.76 LINK OAT 58A B 303 CA CA B 304 1555 1555 2.32 LINK OAW 58A B 303 CA CA B 304 1555 1555 2.48 LINK OAA 58A B 303 NA NA B 309 1555 1555 3.14 CRYST1 61.630 79.480 95.420 90.00 90.00 90.00 P 2 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016226 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012582 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010480 0.00000 HETATM 1 N MSE A 1 -4.838 101.699 9.381 1.00 36.46 N ANISOU 1 N MSE A 1 4478 4585 4791 146 -878 284 N HETATM 2 CA MSE A 1 -3.395 101.633 9.462 1.00 43.11 C ANISOU 2 CA MSE A 1 5375 5435 5570 128 -814 278 C HETATM 3 C MSE A 1 -2.823 100.317 9.998 1.00 34.40 C ANISOU 3 C MSE A 1 4262 4353 4454 100 -771 244 C HETATM 4 O MSE A 1 -1.668 100.276 10.441 1.00 35.87 O ANISOU 4 O MSE A 1 4473 4544 4610 88 -709 235 O HETATM 5 CB MSE A 1 -2.879 102.758 10.324 1.00 48.85 C ANISOU 5 CB MSE A 1 6095 6145 6321 141 -756 289 C HETATM 6 CG MSE A 1 -3.207 102.594 11.770 1.00 52.19 C ANISOU 6 CG MSE A 1 6449 6569 6810 143 -710 266 C HETATM 7 SE MSE A 1 -2.256 104.017 12.617 1.00 51.89 SE ANISOU 7 SE MSE A 1 6429 6509 6778 155 -642 275 SE HETATM 8 CE MSE A 1 -1.791 103.145 14.300 1.00 46.77 C ANISOU 8 CE MSE A 1 5738 5880 6153 138 -566 235 C