HEADER LIGASE 27-NOV-20 7B2R TITLE CRYSTAL STRUCTURE OF NHL DOMAIN OF TRIM2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRIPARTITE MOTIF-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: E3 UBIQUITIN-PROTEIN LIGASE TRIM2,RING FINGER PROTEIN 86, COMPND 5 RING-TYPE E3 UBIQUITIN TRANSFERASE TRIM2; COMPND 6 EC: 2.3.2.27; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TRIM2, KIAA0517, RNF86; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: -R3-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGTVL2 KEYWDS E3 LIGASE, NHL DOMAIN, TRIM, PROTEIN-PROTEIN INTERACTION, BETA KEYWDS 2 PROPELLER, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR A.CHAIKUAD,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 2 31-JAN-24 7B2R 1 REMARK REVDAT 1 13-JAN-21 7B2R 0 JRNL AUTH A.CHAIKUAD,S.KNAPP,STRUCTURAL GENOMICS CONSORTIUM (SGC) JRNL TITL CRYSTAL STRUCTURE OF NHL DOMAIN OF TRIM2 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0266 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 3 NUMBER OF REFLECTIONS : 49455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2555 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3707 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.10 REMARK 3 BIN R VALUE (WORKING SET) : 0.2000 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4159 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 425 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.03000 REMARK 3 B22 (A**2) : -0.40000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : -0.28000 REMARK 3 B13 (A**2) : 0.71000 REMARK 3 B23 (A**2) : -0.32000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.102 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.377 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.972 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4351 ; 0.015 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4056 ; 0.001 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5882 ; 1.515 ; 1.632 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9319 ; 1.425 ; 1.587 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 574 ; 7.239 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 233 ;27.521 ;23.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 687 ;12.915 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.668 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 559 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5219 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1087 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 468 739 B 468 739 8470 0.120 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 465 A 578 REMARK 3 ORIGIN FOR THE GROUP (A): -0.4327 23.7100 28.0750 REMARK 3 T TENSOR REMARK 3 T11: 0.0583 T22: 0.0281 REMARK 3 T33: 0.0558 T12: 0.0083 REMARK 3 T13: 0.0367 T23: 0.0167 REMARK 3 L TENSOR REMARK 3 L11: 2.5172 L22: 1.5113 REMARK 3 L33: 1.2869 L12: 0.3709 REMARK 3 L13: 1.0147 L23: 0.2107 REMARK 3 S TENSOR REMARK 3 S11: -0.0246 S12: 0.1267 S13: 0.1349 REMARK 3 S21: -0.1102 S22: -0.0138 S23: 0.1170 REMARK 3 S31: 0.0047 S32: -0.0791 S33: 0.0385 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 579 A 627 REMARK 3 ORIGIN FOR THE GROUP (A): -3.3919 5.2993 24.0653 REMARK 3 T TENSOR REMARK 3 T11: 0.1310 T22: 0.0900 REMARK 3 T33: 0.0708 T12: -0.0174 REMARK 3 T13: 0.0394 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.4373 L22: 4.1156 REMARK 3 L33: 3.6297 L12: -0.3230 REMARK 3 L13: 0.9413 L23: -2.5441 REMARK 3 S TENSOR REMARK 3 S11: -0.0111 S12: 0.1509 S13: -0.0305 REMARK 3 S21: -0.4068 S22: -0.0058 S23: -0.0029 REMARK 3 S31: 0.1414 S32: -0.1394 S33: 0.0169 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 628 A 740 REMARK 3 ORIGIN FOR THE GROUP (A): 11.1158 9.4772 32.6064 REMARK 3 T TENSOR REMARK 3 T11: 0.0492 T22: 0.0366 REMARK 3 T33: 0.0629 T12: 0.0119 REMARK 3 T13: 0.0258 T23: 0.0212 REMARK 3 L TENSOR REMARK 3 L11: 1.7997 L22: 3.3826 REMARK 3 L33: 0.9419 L12: 0.3784 REMARK 3 L13: 0.2603 L23: 0.6722 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: 0.1086 S13: -0.1347 REMARK 3 S21: -0.0149 S22: -0.0274 S23: -0.1960 REMARK 3 S31: 0.1813 S32: 0.0592 S33: 0.0166 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 468 B 573 REMARK 3 ORIGIN FOR THE GROUP (A): 6.8357 8.7319 65.3587 REMARK 3 T TENSOR REMARK 3 T11: 0.0177 T22: 0.0389 REMARK 3 T33: 0.0382 T12: -0.0029 REMARK 3 T13: 0.0067 T23: 0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.5858 L22: 2.2893 REMARK 3 L33: 0.9419 L12: 0.2135 REMARK 3 L13: -0.0159 L23: -0.2330 REMARK 3 S TENSOR REMARK 3 S11: -0.0018 S12: -0.1445 S13: -0.0918 REMARK 3 S21: 0.1382 S22: -0.0246 S23: -0.1374 REMARK 3 S31: 0.0098 S32: 0.0484 S33: 0.0263 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 574 B 625 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5967 -5.9030 60.4658 REMARK 3 T TENSOR REMARK 3 T11: 0.0305 T22: 0.0298 REMARK 3 T33: 0.0796 T12: -0.0132 REMARK 3 T13: 0.0308 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 3.4729 L22: 2.4602 REMARK 3 L33: 4.6439 L12: 0.3338 REMARK 3 L13: 1.7340 L23: -0.3289 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: -0.2870 S13: -0.1739 REMARK 3 S21: 0.1257 S22: -0.1106 S23: 0.0035 REMARK 3 S31: 0.1546 S32: -0.2189 S33: 0.0954 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 626 B 740 REMARK 3 ORIGIN FOR THE GROUP (A): -9.3155 10.7340 54.6366 REMARK 3 T TENSOR REMARK 3 T11: 0.0066 T22: 0.0258 REMARK 3 T33: 0.0329 T12: 0.0076 REMARK 3 T13: 0.0092 T23: 0.0051 REMARK 3 L TENSOR REMARK 3 L11: 1.9945 L22: 1.9428 REMARK 3 L33: 0.7082 L12: 0.7778 REMARK 3 L13: 0.1439 L23: -0.0022 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: -0.0441 S13: 0.0484 REMARK 3 S21: -0.0003 S22: 0.0273 S23: 0.1674 REMARK 3 S31: -0.0211 S32: -0.1275 S33: 0.0194 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7B2R COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292112549. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-AUG-20 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00003 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52021 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 38.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.22700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6D69 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% MEDIUM MOLECULAR WEIGHT PEG REMARK 280 SMEARS, 0.1M MES PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 464 REMARK 465 SER B 464 REMARK 465 MET B 465 REMARK 465 ASN B 466 REMARK 465 PRO B 467 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 561 OD1 ASP A 563 2.01 REMARK 500 OG SER B 514 OD1 ASP B 516 2.12 REMARK 500 O1 EDO B 801 O HOH B 901 2.15 REMARK 500 O HOH B 992 O HOH B 1102 2.16 REMARK 500 OG SER B 561 OD1 ASP B 563 2.18 REMARK 500 O HOH B 938 O HOH B 1102 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 490 -105.93 -125.38 REMARK 500 THR A 537 -80.68 -119.66 REMARK 500 THR A 537 -81.35 -119.15 REMARK 500 LYS A 567 -63.27 -106.82 REMARK 500 LYS A 579 -90.84 -121.34 REMARK 500 HIS A 626 -78.42 -118.18 REMARK 500 ALA A 671 78.01 91.40 REMARK 500 THR A 673 -95.98 -126.38 REMARK 500 GLN A 717 -108.91 -108.69 REMARK 500 GLN B 490 -80.58 -133.30 REMARK 500 THR B 537 -71.93 -110.14 REMARK 500 LYS B 579 -93.30 -126.08 REMARK 500 HIS B 626 -74.51 -114.05 REMARK 500 ASN B 670 74.04 -116.47 REMARK 500 ALA B 671 94.85 80.35 REMARK 500 THR B 673 -100.43 -124.80 REMARK 500 GLN B 717 -115.87 -114.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 807 DBREF 7B2R A 466 740 UNP Q9C040 TRIM2_HUMAN 466 740 DBREF 7B2R B 466 740 UNP Q9C040 TRIM2_HUMAN 466 740 SEQADV 7B2R SER A 464 UNP Q9C040 EXPRESSION TAG SEQADV 7B2R MET A 465 UNP Q9C040 EXPRESSION TAG SEQADV 7B2R SER B 464 UNP Q9C040 EXPRESSION TAG SEQADV 7B2R MET B 465 UNP Q9C040 EXPRESSION TAG SEQRES 1 A 277 SER MET ASN PRO ILE GLU ASP ASP LEU ILE PHE ARG VAL SEQRES 2 A 277 GLY THR LYS GLY ARG ASN LYS GLY GLU PHE THR ASN LEU SEQRES 3 A 277 GLN GLY VAL ALA ALA SER THR ASN GLY LYS ILE LEU ILE SEQRES 4 A 277 ALA ASP SER ASN ASN GLN CYS VAL GLN ILE PHE SER ASN SEQRES 5 A 277 ASP GLY GLN PHE LYS SER ARG PHE GLY ILE ARG GLY ARG SEQRES 6 A 277 SER PRO GLY GLN LEU GLN ARG PRO THR GLY VAL ALA VAL SEQRES 7 A 277 HIS PRO SER GLY ASP ILE ILE ILE ALA ASP TYR ASP ASN SEQRES 8 A 277 LYS TRP VAL SER ILE PHE SER SER ASP GLY LYS PHE LYS SEQRES 9 A 277 THR LYS ILE GLY SER GLY LYS LEU MET GLY PRO LYS GLY SEQRES 10 A 277 VAL SER VAL ASP ARG ASN GLY HIS ILE ILE VAL VAL ASP SEQRES 11 A 277 ASN LYS ALA CYS CYS VAL PHE ILE PHE GLN PRO ASN GLY SEQRES 12 A 277 LYS ILE VAL THR ARG PHE GLY SER ARG GLY ASN GLY ASP SEQRES 13 A 277 ARG GLN PHE ALA GLY PRO HIS PHE ALA ALA VAL ASN SER SEQRES 14 A 277 ASN ASN GLU ILE ILE ILE THR ASP PHE HIS ASN HIS SER SEQRES 15 A 277 VAL LYS VAL PHE ASN GLN GLU GLY GLU PHE MET LEU LYS SEQRES 16 A 277 PHE GLY SER ASN GLY GLU GLY ASN GLY GLN PHE ASN ALA SEQRES 17 A 277 PRO THR GLY VAL ALA VAL ASP SER ASN GLY ASN ILE ILE SEQRES 18 A 277 VAL ALA ASP TRP GLY ASN SER ARG ILE GLN VAL PHE ASP SEQRES 19 A 277 GLY SER GLY SER PHE LEU SER TYR ILE ASN THR SER ALA SEQRES 20 A 277 ASP PRO LEU TYR GLY PRO GLN GLY LEU ALA LEU THR SER SEQRES 21 A 277 ASP GLY HIS VAL VAL VAL ALA ASP SER GLY ASN HIS CYS SEQRES 22 A 277 PHE LYS VAL TYR SEQRES 1 B 277 SER MET ASN PRO ILE GLU ASP ASP LEU ILE PHE ARG VAL SEQRES 2 B 277 GLY THR LYS GLY ARG ASN LYS GLY GLU PHE THR ASN LEU SEQRES 3 B 277 GLN GLY VAL ALA ALA SER THR ASN GLY LYS ILE LEU ILE SEQRES 4 B 277 ALA ASP SER ASN ASN GLN CYS VAL GLN ILE PHE SER ASN SEQRES 5 B 277 ASP GLY GLN PHE LYS SER ARG PHE GLY ILE ARG GLY ARG SEQRES 6 B 277 SER PRO GLY GLN LEU GLN ARG PRO THR GLY VAL ALA VAL SEQRES 7 B 277 HIS PRO SER GLY ASP ILE ILE ILE ALA ASP TYR ASP ASN SEQRES 8 B 277 LYS TRP VAL SER ILE PHE SER SER ASP GLY LYS PHE LYS SEQRES 9 B 277 THR LYS ILE GLY SER GLY LYS LEU MET GLY PRO LYS GLY SEQRES 10 B 277 VAL SER VAL ASP ARG ASN GLY HIS ILE ILE VAL VAL ASP SEQRES 11 B 277 ASN LYS ALA CYS CYS VAL PHE ILE PHE GLN PRO ASN GLY SEQRES 12 B 277 LYS ILE VAL THR ARG PHE GLY SER ARG GLY ASN GLY ASP SEQRES 13 B 277 ARG GLN PHE ALA GLY PRO HIS PHE ALA ALA VAL ASN SER SEQRES 14 B 277 ASN ASN GLU ILE ILE ILE THR ASP PHE HIS ASN HIS SER SEQRES 15 B 277 VAL LYS VAL PHE ASN GLN GLU GLY GLU PHE MET LEU LYS SEQRES 16 B 277 PHE GLY SER ASN GLY GLU GLY ASN GLY GLN PHE ASN ALA SEQRES 17 B 277 PRO THR GLY VAL ALA VAL ASP SER ASN GLY ASN ILE ILE SEQRES 18 B 277 VAL ALA ASP TRP GLY ASN SER ARG ILE GLN VAL PHE ASP SEQRES 19 B 277 GLY SER GLY SER PHE LEU SER TYR ILE ASN THR SER ALA SEQRES 20 B 277 ASP PRO LEU TYR GLY PRO GLN GLY LEU ALA LEU THR SER SEQRES 21 B 277 ASP GLY HIS VAL VAL VAL ALA ASP SER GLY ASN HIS CYS SEQRES 22 B 277 PHE LYS VAL TYR HET EDO A 801 4 HET EDO A 802 4 HET EDO B 801 4 HET EDO B 802 8 HET EDO B 803 4 HET EDO B 804 4 HET EDO B 805 4 HET EDO B 806 4 HET EDO B 807 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 9(C2 H6 O2) FORMUL 12 HOH *425(H2 O) HELIX 1 AA1 HIS A 642 HIS A 644 5 3 HELIX 2 AA2 GLY A 733 HIS A 735 5 3 HELIX 3 AA3 HIS B 642 HIS B 644 5 3 HELIX 4 AA4 SER B 732 HIS B 735 5 4 SHEET 1 AA1 4 PHE A 474 VAL A 476 0 SHEET 2 AA1 4 CYS A 736 VAL A 739 -1 O VAL A 739 N PHE A 474 SHEET 3 AA1 4 VAL A 727 ASP A 731 -1 N ASP A 731 O CYS A 736 SHEET 4 AA1 4 PRO A 716 LEU A 721 -1 N ALA A 720 O VAL A 728 SHEET 1 AA2 2 THR A 478 LYS A 479 0 SHEET 2 AA2 2 GLU A 485 PHE A 486 1 O PHE A 486 N THR A 478 SHEET 1 AA3 4 LEU A 489 ALA A 494 0 SHEET 2 AA3 4 LYS A 499 ASP A 504 -1 O LEU A 501 N ALA A 493 SHEET 3 AA3 4 CYS A 509 SER A 514 -1 O PHE A 513 N ILE A 500 SHEET 4 AA3 4 PHE A 519 PHE A 523 -1 O LYS A 520 N ILE A 512 SHEET 1 AA4 4 PRO A 536 VAL A 541 0 SHEET 2 AA4 4 ILE A 547 ASP A 551 -1 O ILE A 548 N ALA A 540 SHEET 3 AA4 4 TRP A 556 PHE A 560 -1 O PHE A 560 N ILE A 547 SHEET 4 AA4 4 PHE A 566 ILE A 570 -1 O THR A 568 N ILE A 559 SHEET 1 AA5 4 PRO A 578 VAL A 583 0 SHEET 2 AA5 4 ILE A 589 ASP A 593 -1 O VAL A 592 N GLY A 580 SHEET 3 AA5 4 CYS A 598 PHE A 602 -1 O PHE A 602 N ILE A 589 SHEET 4 AA5 4 ILE A 608 PHE A 612 -1 O VAL A 609 N ILE A 601 SHEET 1 AA6 4 PRO A 625 VAL A 630 0 SHEET 2 AA6 4 ILE A 636 ASP A 640 -1 O ILE A 637 N ALA A 629 SHEET 3 AA6 4 SER A 645 PHE A 649 -1 O LYS A 647 N ILE A 638 SHEET 4 AA6 4 PHE A 655 PHE A 659 -1 O MET A 656 N VAL A 648 SHEET 1 AA7 4 PRO A 672 VAL A 677 0 SHEET 2 AA7 4 ILE A 683 ASP A 687 -1 O ILE A 684 N ALA A 676 SHEET 3 AA7 4 ARG A 692 PHE A 696 -1 O ARG A 692 N ASP A 687 SHEET 4 AA7 4 PHE A 702 TYR A 705 -1 O SER A 704 N VAL A 695 SHEET 1 AA8 4 PHE B 474 VAL B 476 0 SHEET 2 AA8 4 CYS B 736 VAL B 739 -1 O VAL B 739 N PHE B 474 SHEET 3 AA8 4 VAL B 727 ASP B 731 -1 N VAL B 729 O LYS B 738 SHEET 4 AA8 4 LEU B 719 LEU B 721 -1 N ALA B 720 O VAL B 728 SHEET 1 AA9 2 THR B 478 LYS B 479 0 SHEET 2 AA9 2 GLU B 485 PHE B 486 1 O PHE B 486 N THR B 478 SHEET 1 AB1 4 LEU B 489 ALA B 494 0 SHEET 2 AB1 4 LYS B 499 ASP B 504 -1 O LEU B 501 N ALA B 493 SHEET 3 AB1 4 CYS B 509 SER B 514 -1 O PHE B 513 N ILE B 500 SHEET 4 AB1 4 PHE B 519 PHE B 523 -1 O LYS B 520 N ILE B 512 SHEET 1 AB2 4 PRO B 536 VAL B 541 0 SHEET 2 AB2 4 ILE B 547 ASP B 551 -1 O ILE B 548 N ALA B 540 SHEET 3 AB2 4 TRP B 556 PHE B 560 -1 O PHE B 560 N ILE B 547 SHEET 4 AB2 4 PHE B 566 ILE B 570 -1 O THR B 568 N ILE B 559 SHEET 1 AB3 4 PRO B 578 VAL B 583 0 SHEET 2 AB3 4 ILE B 589 ASP B 593 -1 O VAL B 592 N GLY B 580 SHEET 3 AB3 4 CYS B 598 PHE B 602 -1 O PHE B 602 N ILE B 589 SHEET 4 AB3 4 ILE B 608 PHE B 612 -1 O VAL B 609 N ILE B 601 SHEET 1 AB4 4 PRO B 625 VAL B 630 0 SHEET 2 AB4 4 ILE B 636 ASP B 640 -1 O ILE B 637 N ALA B 629 SHEET 3 AB4 4 SER B 645 PHE B 649 -1 O SER B 645 N ASP B 640 SHEET 4 AB4 4 PHE B 655 PHE B 659 -1 O MET B 656 N VAL B 648 SHEET 1 AB5 2 SER B 661 ASN B 662 0 SHEET 2 AB5 2 GLN B 668 PHE B 669 1 O PHE B 669 N SER B 661 SHEET 1 AB6 4 PRO B 672 VAL B 677 0 SHEET 2 AB6 4 ILE B 683 ASP B 687 -1 O ILE B 684 N ALA B 676 SHEET 3 AB6 4 ARG B 692 PHE B 696 -1 O ARG B 692 N ASP B 687 SHEET 4 AB6 4 PHE B 702 TYR B 705 -1 O LEU B 703 N VAL B 695 SITE 1 AC1 7 TRP A 688 TYR A 714 GLN A 717 SER A 732 SITE 2 AC1 7 GLY A 733 HOH A1059 LEU B 713 SITE 1 AC2 6 HIS A 626 PHE A 641 TRP A 688 GLN A 717 SITE 2 AC2 6 HOH A 930 GLY B 689 SITE 1 AC3 8 ASN A 670 LYS B 579 HIS B 626 PHE B 641 SITE 2 AC3 8 TRP B 688 GLN B 717 HOH B 901 HOH B1013 SITE 1 AC4 9 ASN A 670 GLY A 689 TRP B 688 TYR B 714 SITE 2 AC4 9 GLY B 715 SER B 732 GLY B 733 HOH B 901 SITE 3 AC4 9 HOH B1008 SITE 1 AC5 9 ARG B 475 THR B 610 ARG B 611 PHE B 612 SITE 2 AC5 9 GLU B 652 GLY B 653 HOH B 960 HOH B 967 SITE 3 AC5 9 HOH B 978 SITE 1 AC6 3 LYS B 483 ILE B 608 EDO B 805 SITE 1 AC7 6 VAL B 476 GLY B 517 GLN B 518 PHE B 519 SITE 2 AC7 6 VAL B 609 EDO B 804 SITE 1 AC8 6 SER B 495 THR B 496 ASN B 497 VAL B 541 SITE 2 AC8 6 HIS B 542 HOH B 921 SITE 1 AC9 3 LYS B 499 GLY B 545 SER B 562 CRYST1 43.620 44.223 68.230 74.06 86.93 62.38 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022925 -0.011997 0.002247 0.00000 SCALE2 0.000000 0.025522 -0.007509 0.00000 SCALE3 0.000000 0.000000 0.015299 0.00000