HEADER GENE REGULATION 29-NOV-20 7B39 TITLE ALLENE-BASED DESIGN OF A NONCALCEMIC VITAMIN D RECEPTOR AGONIST COMPND MOL_ID: 1; COMPND 2 MOLECULE: VITAMIN D3 RECEPTOR A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: VDR-A,1,25-DIHYDROXYVITAMIN D3 RECEPTOR A,NUCLEAR RECEPTOR COMPND 5 SUBFAMILY 1 GROUP I MEMBER 1-A; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: NUCLEAR RECEPTOR COACTIVATOR 1; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: NCOA-1,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 74,BHLHE74, COMPND 11 PROTEIN HIN-2,RIP160,RENAL CARCINOMA ANTIGEN NY-REN-52,STEROID COMPND 12 RECEPTOR COACTIVATOR 1,SRC-1; COMPND 13 EC: 2.3.1.48; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: ZEBRAFISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: VDRA, NR1I1A, VDR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606 KEYWDS VITAMIN D RECEPTOR, GENE REGULATION EXPDTA X-RAY DIFFRACTION AUTHOR N.ROCHEL REVDAT 3 31-JAN-24 7B39 1 REMARK REVDAT 2 29-SEP-21 7B39 1 JRNL REVDAT 1 01-SEP-21 7B39 0 JRNL AUTH R.FRAGA,K.LEN,R.LUTZING,G.LAVERNY,J.LOUREIRO,M.A.MAESTRO, JRNL AUTH 2 N.ROCHEL,E.RODRIGUEZ-BORGES,A.MOURINO JRNL TITL DESIGN, SYNTHESIS, EVALUATION AND STRUCTURE OF ALLENIC 1 JRNL TITL 2 ALPHA ,25-DIHYDROXYVITAMIN D 3 ANALOGS WITH LOCKED MOBILITY JRNL TITL 3 AT C-17. JRNL REF CHEMISTRY V. 27 13384 2021 JRNL REFN ISSN 0947-6539 JRNL PMID 34224173 JRNL DOI 10.1002/CHEM.202101578 REMARK 2 REMARK 2 RESOLUTION. 2.13 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17_3644 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.13 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 20159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.820 REMARK 3 FREE R VALUE TEST SET COUNT : 1980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9000 - 5.1200 1.00 1484 162 0.1778 0.2150 REMARK 3 2 5.1100 - 4.0600 1.00 1372 149 0.1561 0.2097 REMARK 3 3 4.0600 - 3.5500 1.00 1346 148 0.1835 0.2167 REMARK 3 4 3.5500 - 3.2300 1.00 1312 142 0.2226 0.2854 REMARK 3 5 3.2300 - 3.0000 1.00 1299 142 0.2409 0.2567 REMARK 3 6 3.0000 - 2.8200 1.00 1309 143 0.2441 0.2647 REMARK 3 7 2.8200 - 2.6800 1.00 1287 140 0.2389 0.2982 REMARK 3 8 2.6800 - 2.5600 0.99 1269 139 0.2438 0.3670 REMARK 3 9 2.5600 - 2.4600 0.98 1261 137 0.2416 0.3070 REMARK 3 10 2.4600 - 2.3800 0.99 1265 137 0.2566 0.3176 REMARK 3 11 2.3800 - 2.3000 0.99 1258 137 0.2500 0.3264 REMARK 3 12 2.3000 - 2.2400 0.98 1255 136 0.2758 0.3315 REMARK 3 13 2.2400 - 2.1800 0.98 1258 137 0.2904 0.3653 REMARK 3 14 2.1800 - 2.1300 0.96 1204 131 0.3151 0.3482 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.251 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 52.35 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 2130 REMARK 3 ANGLE : 0.455 2879 REMARK 3 CHIRALITY : 0.035 323 REMARK 3 PLANARITY : 0.004 373 REMARK 3 DIHEDRAL : 18.197 829 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 154 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.5099 39.8714 7.1014 REMARK 3 T TENSOR REMARK 3 T11: 0.5952 T22: 0.7655 REMARK 3 T33: 0.7033 T12: -0.0851 REMARK 3 T13: 0.0800 T23: -0.2824 REMARK 3 L TENSOR REMARK 3 L11: 3.6558 L22: 6.2926 REMARK 3 L33: 9.3352 L12: -1.8859 REMARK 3 L13: -2.2531 L23: 4.6515 REMARK 3 S TENSOR REMARK 3 S11: 0.1389 S12: -0.8765 S13: 1.1059 REMARK 3 S21: 0.3641 S22: -0.1674 S23: 0.1436 REMARK 3 S31: -1.2138 S32: -0.0268 S33: 0.1355 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 184 ) REMARK 3 ORIGIN FOR THE GROUP (A): -41.9217 23.3546 -10.9627 REMARK 3 T TENSOR REMARK 3 T11: 0.5424 T22: 0.8614 REMARK 3 T33: 0.6498 T12: -0.1226 REMARK 3 T13: 0.1053 T23: -0.1759 REMARK 3 L TENSOR REMARK 3 L11: 2.1709 L22: 4.1130 REMARK 3 L33: 4.6304 L12: -2.9836 REMARK 3 L13: -2.7847 L23: 3.9466 REMARK 3 S TENSOR REMARK 3 S11: 0.6231 S12: 0.2432 S13: -0.4185 REMARK 3 S21: -0.3197 S22: -1.6009 S23: 1.8233 REMARK 3 S31: -0.9639 S32: -1.9150 S33: 0.8236 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 185 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9237 11.4006 -16.7475 REMARK 3 T TENSOR REMARK 3 T11: 0.5988 T22: 0.5806 REMARK 3 T33: 0.5880 T12: -0.0682 REMARK 3 T13: 0.0515 T23: -0.0963 REMARK 3 L TENSOR REMARK 3 L11: 1.9675 L22: 9.5572 REMARK 3 L33: 7.7786 L12: -0.5950 REMARK 3 L13: 1.4055 L23: 1.6833 REMARK 3 S TENSOR REMARK 3 S11: 0.3086 S12: 0.3332 S13: -1.1049 REMARK 3 S21: 0.3402 S22: -0.5215 S23: 0.3475 REMARK 3 S31: 0.7908 S32: 0.1323 S33: 0.2376 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.3974 30.8748 -5.9754 REMARK 3 T TENSOR REMARK 3 T11: 0.3269 T22: 0.4796 REMARK 3 T33: 0.3707 T12: -0.0548 REMARK 3 T13: 0.0347 T23: -0.0760 REMARK 3 L TENSOR REMARK 3 L11: 4.0513 L22: 5.6795 REMARK 3 L33: 8.4635 L12: 0.9268 REMARK 3 L13: -1.6420 L23: 2.7270 REMARK 3 S TENSOR REMARK 3 S11: 0.2686 S12: -0.3837 S13: 0.3764 REMARK 3 S21: 0.1877 S22: -0.0099 S23: -0.0551 REMARK 3 S31: -0.3584 S32: 0.4094 S33: -0.2524 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 306 THROUGH 351 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.2779 12.3432 -1.3137 REMARK 3 T TENSOR REMARK 3 T11: 0.9154 T22: 0.6456 REMARK 3 T33: 0.5861 T12: -0.1150 REMARK 3 T13: 0.1394 T23: 0.0728 REMARK 3 L TENSOR REMARK 3 L11: 4.8886 L22: 3.6671 REMARK 3 L33: 2.8090 L12: -1.3295 REMARK 3 L13: -1.5086 L23: 2.4034 REMARK 3 S TENSOR REMARK 3 S11: -0.2612 S12: -0.4145 S13: -0.6208 REMARK 3 S21: 0.3518 S22: -0.1306 S23: 0.3768 REMARK 3 S31: 1.3705 S32: -0.5531 S33: 0.4615 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 352 THROUGH 376 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.2955 32.3751 5.0332 REMARK 3 T TENSOR REMARK 3 T11: 0.5832 T22: 0.8018 REMARK 3 T33: 0.3798 T12: -0.1398 REMARK 3 T13: -0.0103 T23: -0.1562 REMARK 3 L TENSOR REMARK 3 L11: 8.3418 L22: 4.2942 REMARK 3 L33: 7.8394 L12: -0.2864 REMARK 3 L13: -3.7809 L23: 0.6895 REMARK 3 S TENSOR REMARK 3 S11: -0.0482 S12: -0.8479 S13: 0.7583 REMARK 3 S21: -0.0074 S22: 0.3416 S23: -0.1456 REMARK 3 S31: -0.1205 S32: 0.9781 S33: -0.2005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 377 THROUGH 401 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.0773 37.3178 12.8978 REMARK 3 T TENSOR REMARK 3 T11: 0.7582 T22: 1.1403 REMARK 3 T33: 0.5579 T12: -0.2006 REMARK 3 T13: -0.0025 T23: -0.2764 REMARK 3 L TENSOR REMARK 3 L11: 8.6391 L22: 6.0319 REMARK 3 L33: 7.7976 L12: 1.3289 REMARK 3 L13: -3.8936 L23: 0.5395 REMARK 3 S TENSOR REMARK 3 S11: 0.4270 S12: -2.0244 S13: 0.8358 REMARK 3 S21: 0.6926 S22: -0.1673 S23: -0.0552 REMARK 3 S31: -0.7744 S32: 1.4050 S33: -0.0923 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 402 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1977 21.9518 4.2085 REMARK 3 T TENSOR REMARK 3 T11: 0.5903 T22: 0.8619 REMARK 3 T33: 0.4674 T12: 0.0073 REMARK 3 T13: -0.0997 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 7.9917 L22: 4.0157 REMARK 3 L33: 4.5533 L12: -3.0825 REMARK 3 L13: -5.7633 L23: 3.2579 REMARK 3 S TENSOR REMARK 3 S11: -0.1759 S12: -2.1888 S13: -0.2321 REMARK 3 S21: 0.7444 S22: 0.3871 S23: -0.0551 REMARK 3 S31: 0.1594 S32: 1.9576 S33: -0.2357 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 432 THROUGH 453 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.7576 22.9648 -16.3887 REMARK 3 T TENSOR REMARK 3 T11: 0.6104 T22: 0.5787 REMARK 3 T33: 0.4377 T12: 0.0445 REMARK 3 T13: -0.0144 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 9.0679 L22: 8.8442 REMARK 3 L33: 5.3282 L12: -2.8637 REMARK 3 L13: -2.4646 L23: 2.5721 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: -0.1894 S13: -0.0150 REMARK 3 S21: 0.5693 S22: 0.3107 S23: -0.8076 REMARK 3 S31: 0.3901 S32: 0.7424 S33: -0.2565 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 686 THROUGH 696 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.5017 38.5792 -15.4968 REMARK 3 T TENSOR REMARK 3 T11: 0.8527 T22: 0.6684 REMARK 3 T33: 0.7389 T12: -0.0524 REMARK 3 T13: 0.0730 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 2.8860 L22: 7.5100 REMARK 3 L33: 4.7626 L12: -4.5313 REMARK 3 L13: -1.6888 L23: 3.5674 REMARK 3 S TENSOR REMARK 3 S11: -0.1328 S12: 0.4157 S13: 0.7918 REMARK 3 S21: -0.2844 S22: 0.2473 S23: 0.4537 REMARK 3 S31: -1.4890 S32: 0.9762 S33: -0.1530 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7B39 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 30-NOV-20. REMARK 100 THE DEPOSITION ID IS D_1292112555. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUN-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20242 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.130 REMARK 200 RESOLUTION RANGE LOW (A) : 24.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 33.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.13 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 2HC4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM BISTRIS PH 6.5, 1.6 M LITHIUM REMARK 280 SULFATE AND 50 MM MAGNESIUM SULFATE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 176.26000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.13000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 132.19500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.06500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 220.32500 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 176.26000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 88.13000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.06500 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 132.19500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 220.32500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 -33.12500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 57.37418 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -44.06500 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 152 REMARK 465 SER A 153 REMARK 465 GLU A 191 REMARK 465 GLY A 192 REMARK 465 PRO A 193 REMARK 465 VAL A 194 REMARK 465 THR A 195 REMARK 465 ARG A 196 REMARK 465 SER A 197 REMARK 465 ALA A 198 REMARK 465 SER A 199 REMARK 465 ARG A 200 REMARK 465 ALA A 201 REMARK 465 ALA A 202 REMARK 465 SER A 203 REMARK 465 LEU A 204 REMARK 465 HIS A 205 REMARK 465 SER A 206 REMARK 465 LEU A 207 REMARK 465 SER A 208 REMARK 465 ASP A 209 REMARK 465 ALA A 210 REMARK 465 SER A 211 REMARK 465 SER A 212 REMARK 465 ASP A 213 REMARK 465 SER A 214 REMARK 465 PHE A 215 REMARK 465 ASN A 216 REMARK 465 HIS A 217 REMARK 465 SER A 218 REMARK 465 PRO A 219 REMARK 465 GLU A 220 REMARK 465 SER A 221 REMARK 465 VAL A 222 REMARK 465 ASP A 223 REMARK 465 THR A 224 REMARK 465 LYS A 225 REMARK 465 LEU A 226 REMARK 465 ASN A 227 REMARK 465 PHE A 228 REMARK 465 SER A 229 REMARK 465 ASN A 230 REMARK 465 LEU A 231 REMARK 465 LEU A 232 REMARK 465 MET A 233 REMARK 465 MET A 234 REMARK 465 TYR A 235 REMARK 465 GLN A 236 REMARK 465 ASP A 237 REMARK 465 SER A 238 REMARK 465 GLY A 239 REMARK 465 SER A 240 REMARK 465 PRO A 241 REMARK 465 ASP A 242 REMARK 465 SER A 243 REMARK 465 SER A 244 REMARK 465 GLU A 245 REMARK 465 GLU A 246 REMARK 465 ASP A 247 REMARK 465 GLN A 248 REMARK 465 GLN A 249 REMARK 465 SER A 250 REMARK 465 GLY B 697 REMARK 465 SER B 698 REMARK 465 PRO B 699 REMARK 465 SER B 700 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 343 O HOH A 601 2.05 REMARK 500 O HOH A 604 O HOH A 634 2.12 REMARK 500 O SER A 431 O HOH A 602 2.15 REMARK 500 O HOH A 605 O HOH A 647 2.17 REMARK 500 O HOH A 609 O HOH A 656 2.18 REMARK 500 O HOH A 661 O HOH A 663 2.18 REMARK 500 O HOH A 619 O HOH A 651 2.19 REMARK 500 N GLY A 347 O HOH A 601 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 367 36.27 -87.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue T0H A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 502 DBREF 7B39 A 156 453 UNP Q9PTN2 VDRA_DANRE 156 453 DBREF 7B39 B 686 700 UNP Q15788 NCOA1_HUMAN 686 700 SEQADV 7B39 GLY A 152 UNP Q9PTN2 EXPRESSION TAG SEQADV 7B39 SER A 153 UNP Q9PTN2 EXPRESSION TAG SEQADV 7B39 HIS A 154 UNP Q9PTN2 EXPRESSION TAG SEQADV 7B39 MET A 155 UNP Q9PTN2 EXPRESSION TAG SEQRES 1 A 302 GLY SER HIS MET LEU SER ASP GLU GLN MET GLN ILE ILE SEQRES 2 A 302 ASN SER LEU VAL GLU ALA HIS HIS LYS THR TYR ASP ASP SEQRES 3 A 302 SER TYR SER ASP PHE VAL ARG PHE ARG PRO PRO VAL ARG SEQRES 4 A 302 GLU GLY PRO VAL THR ARG SER ALA SER ARG ALA ALA SER SEQRES 5 A 302 LEU HIS SER LEU SER ASP ALA SER SER ASP SER PHE ASN SEQRES 6 A 302 HIS SER PRO GLU SER VAL ASP THR LYS LEU ASN PHE SER SEQRES 7 A 302 ASN LEU LEU MET MET TYR GLN ASP SER GLY SER PRO ASP SEQRES 8 A 302 SER SER GLU GLU ASP GLN GLN SER ARG LEU SER MET LEU SEQRES 9 A 302 PRO HIS LEU ALA ASP LEU VAL SER TYR SER ILE GLN LYS SEQRES 10 A 302 VAL ILE GLY PHE ALA LYS MET ILE PRO GLY PHE ARG ASP SEQRES 11 A 302 LEU THR ALA GLU ASP GLN ILE ALA LEU LEU LYS SER SER SEQRES 12 A 302 ALA ILE GLU ILE ILE MET LEU ARG SER ASN GLN SER PHE SEQRES 13 A 302 SER LEU GLU ASP MET SER TRP SER CYS GLY GLY PRO ASP SEQRES 14 A 302 PHE LYS TYR CYS ILE ASN ASP VAL THR LYS ALA GLY HIS SEQRES 15 A 302 THR LEU GLU LEU LEU GLU PRO LEU VAL LYS PHE GLN VAL SEQRES 16 A 302 GLY LEU LYS LYS LEU LYS LEU HIS GLU GLU GLU HIS VAL SEQRES 17 A 302 LEU LEU MET ALA ILE CYS LEU LEU SER PRO ASP ARG PRO SEQRES 18 A 302 GLY VAL GLN ASP HIS VAL ARG ILE GLU ALA LEU GLN ASP SEQRES 19 A 302 ARG LEU CYS ASP VAL LEU GLN ALA TYR ILE ARG ILE GLN SEQRES 20 A 302 HIS PRO GLY GLY ARG LEU LEU TYR ALA LYS MET ILE GLN SEQRES 21 A 302 LYS LEU ALA ASP LEU ARG SER LEU ASN GLU GLU HIS SER SEQRES 22 A 302 LYS GLN TYR ARG SER LEU SER PHE GLN PRO GLU HIS SER SEQRES 23 A 302 MET GLN LEU THR PRO LEU VAL LEU GLU VAL PHE GLY SER SEQRES 24 A 302 GLU VAL SER SEQRES 1 B 15 ARG HIS LYS ILE LEU HIS ARG LEU LEU GLN GLU GLY SER SEQRES 2 B 15 PRO SER HET T0H A 501 30 HET ACT A 502 4 HETNAM T0H (1R,3S,Z)-5-(2-((3AS,7AS,E)-1-(6-HYDROXY-6-METHYLHEPT- HETNAM 2 T0H 1-EN-1-YLIDENE)-7A-METHYLOCTAHYDRO-4H-INDEN-4- HETNAM 3 T0H YLIDENE)ETHYLIDENE)-4-METHYLENECYCLOHEXANE-1,3-DIOL HETNAM ACT ACETATE ION HETSYN T0H (1~{R},3~{S},5~{Z})-5-[(2~{E})-2-[(3~{A}~{S}, HETSYN 2 T0H 7~{A}~{S})-7~{A}-METHYL-1-(6-METHYL-6-OXIDANYL-HEPT-1- HETSYN 3 T0H ENYLIDENE)-2,3,3~{A},5,6,7-HEXAHYDROINDEN-4- HETSYN 4 T0H YLIDENE]ETHYLIDENE]-4-METHYLIDENE-CYCLOHEXANE-1,3-DIOL FORMUL 3 T0H C27 H40 O3 FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 HOH *70(H2 O) HELIX 1 AA1 SER A 157 TYR A 175 1 19 HELIX 2 AA2 TYR A 179 PHE A 185 5 7 HELIX 3 AA3 MET A 254 MET A 275 1 22 HELIX 4 AA4 GLY A 278 LEU A 282 5 5 HELIX 5 AA5 THR A 283 SER A 303 1 21 HELIX 6 AA6 GLY A 318 ASP A 320 5 3 HELIX 7 AA7 CYS A 324 LYS A 330 1 7 HELIX 8 AA8 THR A 334 LYS A 352 1 19 HELIX 9 AA9 HIS A 354 LEU A 367 1 14 HELIX 10 AB1 ASP A 376 HIS A 399 1 24 HELIX 11 AB2 LEU A 404 PHE A 432 1 29 HELIX 12 AB3 GLN A 433 MET A 438 1 6 HELIX 13 AB4 THR A 441 GLY A 449 1 9 HELIX 14 AB5 HIS B 687 GLN B 695 1 9 SHEET 1 AA1 3 PHE A 307 SER A 308 0 SHEET 2 AA1 3 SER A 313 SER A 315 -1 O SER A 313 N SER A 308 SHEET 3 AA1 3 LYS A 322 TYR A 323 -1 O TYR A 323 N TRP A 314 SITE 1 AC1 12 TYR A 175 SER A 265 ILE A 299 ARG A 302 SITE 2 AC1 12 SER A 303 SER A 306 TRP A 314 CYS A 316 SITE 3 AC1 12 VAL A 328 HIS A 333 HIS A 423 TYR A 427 SITE 1 AC2 7 THR A 174 TYR A 175 ASP A 176 TYR A 264 SITE 2 AC2 7 LYS A 268 ARG A 302 HOH A 634 CRYST1 66.250 66.250 264.390 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015094 0.008715 0.000000 0.00000 SCALE2 0.000000 0.017429 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003782 0.00000