HEADER TRANSCRIPTION 02-DEC-20 7B47 TITLE STRUCTURAL BASIS OF REACTIVATION OF ONCOGENIC P53 MUTANTS BY A SMALL TITLE 2 MOLECULE: METHYLENE QUINUCLIDINONE (MQ). HUMAN P53DBD-R273H MUTANT TITLE 3 BOUND TO MQ: R273H-MQ (I) COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: P53 HUMAN DNA BINDING DOMAIN; COMPND 5 SYNONYM: ANTIGEN NY-CO-13,PHOSPHOPROTEIN P53,TUMOR SUPPRESSOR P53; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TP53, P53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-27-B KEYWDS P53, TUMOR SUPPRESSOR, DNA BINDING PROTEIN, PROTEIN DNA COMPLEX, KEYWDS 2 MICHAEL ACCEPTOR, MICHAEL REACTION, PROTEIN-DRUG COMPLEX, PROTEIN- KEYWDS 3 DNA-DRUG COMPLEX, LOOP-SHEET-HELIX MOTIF, DNA TARGET, ACTIVATOR, KEYWDS 4 TRANSCRIPTION, HOOGSTEEN BASE-PAIRING EXPDTA X-RAY DIFFRACTION AUTHOR O.DEGTJARIK,H.ROZENBERG,Z.SHAKKED REVDAT 3 31-JAN-24 7B47 1 REMARK REVDAT 2 15-DEC-21 7B47 1 JRNL REVDAT 1 08-DEC-21 7B47 0 JRNL AUTH O.DEGTJARIK,D.GOLOVENKO,Y.DISKIN-POSNER,L.ABRAHMSEN, JRNL AUTH 2 H.ROZENBERG,Z.SHAKKED JRNL TITL STRUCTURAL BASIS OF REACTIVATION OF ONCOGENIC P53 MUTANTS BY JRNL TITL 2 A SMALL MOLECULE: METHYLENE QUINUCLIDINONE (MQ). JRNL REF NAT COMMUN V. 12 7057 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34862374 JRNL DOI 10.1038/S41467-021-27142-6 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.50 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 76098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.620 REMARK 3 FREE R VALUE TEST SET COUNT : 1996 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.5000 - 4.3300 0.99 5422 152 0.1563 0.1708 REMARK 3 2 4.3300 - 3.4400 0.99 5332 144 0.1499 0.1665 REMARK 3 3 3.4400 - 3.0000 0.99 5327 138 0.1753 0.2186 REMARK 3 4 3.0000 - 2.7300 0.99 5285 147 0.1857 0.2050 REMARK 3 5 2.7300 - 2.5300 1.00 5327 145 0.1821 0.2017 REMARK 3 6 2.5300 - 2.3800 1.00 5308 148 0.1871 0.2182 REMARK 3 7 2.3800 - 2.2600 1.00 5315 148 0.1888 0.2329 REMARK 3 8 2.2600 - 2.1600 0.99 5272 136 0.2025 0.2126 REMARK 3 9 2.1600 - 2.0800 0.99 5305 144 0.1927 0.2051 REMARK 3 10 2.0800 - 2.0100 1.00 5294 138 0.1915 0.2525 REMARK 3 11 2.0100 - 1.9500 1.00 5283 132 0.2044 0.2276 REMARK 3 12 1.9500 - 1.8900 0.99 5289 154 0.2359 0.2759 REMARK 3 13 1.8900 - 1.8400 0.99 5266 131 0.2388 0.2579 REMARK 3 14 1.8400 - 1.8000 0.96 5077 139 0.2545 0.3068 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.187 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.61 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6513 REMARK 3 ANGLE : 0.901 8952 REMARK 3 CHIRALITY : 0.055 983 REMARK 3 PLANARITY : 0.005 1204 REMARK 3 DIHEDRAL : 23.935 2432 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 31 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 97 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): 72.0236 -2.3443 -19.9789 REMARK 3 T TENSOR REMARK 3 T11: 0.3163 T22: 0.2100 REMARK 3 T33: 0.2287 T12: -0.0313 REMARK 3 T13: 0.0439 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 1.5752 L22: 0.7934 REMARK 3 L33: 1.5473 L12: 0.9110 REMARK 3 L13: 1.4079 L23: 1.0497 REMARK 3 S TENSOR REMARK 3 S11: 0.0693 S12: -0.4502 S13: 0.0096 REMARK 3 S21: 0.0372 S22: -0.3002 S23: 0.1154 REMARK 3 S31: 0.3612 S32: -0.4311 S33: -0.0910 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.5960 0.1298 -33.7505 REMARK 3 T TENSOR REMARK 3 T11: 0.2400 T22: 0.1341 REMARK 3 T33: 0.2430 T12: 0.0036 REMARK 3 T13: -0.0119 T23: -0.0346 REMARK 3 L TENSOR REMARK 3 L11: 1.5152 L22: 0.3519 REMARK 3 L33: 0.6457 L12: 0.2639 REMARK 3 L13: -0.1341 L23: -0.4332 REMARK 3 S TENSOR REMARK 3 S11: 0.0295 S12: 0.1533 S13: 0.0019 REMARK 3 S21: -0.1173 S22: 0.0062 S23: 0.0286 REMARK 3 S31: 0.0769 S32: -0.1717 S33: -0.0011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 86.9403 0.5578 -42.5788 REMARK 3 T TENSOR REMARK 3 T11: 0.2464 T22: 0.3091 REMARK 3 T33: 0.2817 T12: -0.0083 REMARK 3 T13: 0.0304 T23: -0.0327 REMARK 3 L TENSOR REMARK 3 L11: 0.1456 L22: 0.0029 REMARK 3 L33: 0.2195 L12: -0.0307 REMARK 3 L13: 0.1902 L23: -0.0336 REMARK 3 S TENSOR REMARK 3 S11: -0.0785 S12: 0.7142 S13: -0.0001 REMARK 3 S21: -0.0614 S22: 0.0358 S23: -0.2215 REMARK 3 S31: -0.0683 S32: 0.5617 S33: -0.0132 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 195 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.2045 5.1478 -29.0493 REMARK 3 T TENSOR REMARK 3 T11: 0.1778 T22: 0.0196 REMARK 3 T33: 0.2495 T12: 0.0237 REMARK 3 T13: 0.0017 T23: -0.0196 REMARK 3 L TENSOR REMARK 3 L11: 0.7489 L22: 0.7598 REMARK 3 L33: 0.9966 L12: 0.7792 REMARK 3 L13: 0.2479 L23: 0.0419 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: -0.0947 S13: 0.1127 REMARK 3 S21: -0.0541 S22: -0.1741 S23: 0.1971 REMARK 3 S31: -0.0999 S32: 0.2006 S33: -0.9050 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 75.9446 -1.8173 -32.3600 REMARK 3 T TENSOR REMARK 3 T11: 0.2628 T22: 0.1219 REMARK 3 T33: 0.2309 T12: 0.0022 REMARK 3 T13: 0.0091 T23: -0.0254 REMARK 3 L TENSOR REMARK 3 L11: 1.6573 L22: 0.5985 REMARK 3 L33: 0.3608 L12: -0.1465 REMARK 3 L13: -0.3154 L23: -0.4037 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: 0.1210 S13: -0.1107 REMARK 3 S21: -0.1011 S22: -0.1057 S23: 0.0539 REMARK 3 S31: 0.1643 S32: 0.0495 S33: 0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 60.9186 -3.9736 -43.9138 REMARK 3 T TENSOR REMARK 3 T11: 0.3441 T22: 0.4002 REMARK 3 T33: 0.3457 T12: 0.0259 REMARK 3 T13: -0.0941 T23: -0.1207 REMARK 3 L TENSOR REMARK 3 L11: 1.3870 L22: 0.0967 REMARK 3 L33: 0.3536 L12: 0.2920 REMARK 3 L13: -0.4519 L23: -0.1050 REMARK 3 S TENSOR REMARK 3 S11: 0.2190 S12: 0.9971 S13: -0.0727 REMARK 3 S21: -0.0628 S22: 0.0528 S23: 0.0195 REMARK 3 S31: 0.0640 S32: 0.1555 S33: 0.0684 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 97 THROUGH 123 ) REMARK 3 ORIGIN FOR THE GROUP (A): 63.7548 -0.1397 12.7527 REMARK 3 T TENSOR REMARK 3 T11: 0.2780 T22: 0.2840 REMARK 3 T33: 0.1916 T12: -0.0398 REMARK 3 T13: 0.0770 T23: 0.1256 REMARK 3 L TENSOR REMARK 3 L11: 1.1931 L22: 0.3244 REMARK 3 L33: 2.1188 L12: 0.5616 REMARK 3 L13: 0.7523 L23: 0.3758 REMARK 3 S TENSOR REMARK 3 S11: -0.2281 S12: -0.6436 S13: 0.1816 REMARK 3 S21: 0.0717 S22: 0.0048 S23: -0.1197 REMARK 3 S31: 0.2850 S32: -0.7207 S33: -0.8759 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 124 THROUGH 163 ) REMARK 3 ORIGIN FOR THE GROUP (A): 67.4716 2.3871 11.0154 REMARK 3 T TENSOR REMARK 3 T11: 0.2515 T22: 0.2685 REMARK 3 T33: 0.2119 T12: 0.0548 REMARK 3 T13: 0.0264 T23: 0.0237 REMARK 3 L TENSOR REMARK 3 L11: 1.4162 L22: 0.2465 REMARK 3 L33: 0.2723 L12: 0.2179 REMARK 3 L13: -0.2388 L23: 0.1713 REMARK 3 S TENSOR REMARK 3 S11: -0.0856 S12: -0.5041 S13: -0.0122 REMARK 3 S21: 0.0523 S22: 0.0651 S23: 0.0816 REMARK 3 S31: 0.0311 S32: -0.2425 S33: -0.0044 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 164 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 80.5969 -0.5782 -1.5032 REMARK 3 T TENSOR REMARK 3 T11: 0.2345 T22: 0.1461 REMARK 3 T33: 0.2628 T12: 0.0565 REMARK 3 T13: 0.0405 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.9857 L22: 0.0522 REMARK 3 L33: 2.7170 L12: -0.0036 REMARK 3 L13: 0.9204 L23: 0.2747 REMARK 3 S TENSOR REMARK 3 S11: -0.2050 S12: 0.1608 S13: -0.2176 REMARK 3 S21: -0.0746 S22: 0.0807 S23: -0.0117 REMARK 3 S31: 0.0948 S32: 0.8510 S33: -0.1053 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 195 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 82.3073 2.1066 9.9744 REMARK 3 T TENSOR REMARK 3 T11: 0.2659 T22: 0.1440 REMARK 3 T33: 0.2699 T12: 0.0691 REMARK 3 T13: -0.0079 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.4114 L22: 0.5508 REMARK 3 L33: 0.9101 L12: 0.2656 REMARK 3 L13: 0.0634 L23: -0.5419 REMARK 3 S TENSOR REMARK 3 S11: -0.0909 S12: -0.2741 S13: -0.2328 REMARK 3 S21: 0.1533 S22: -0.0407 S23: 0.0194 REMARK 3 S31: -0.1178 S32: 0.4357 S33: -0.1649 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.0161 7.9377 18.9870 REMARK 3 T TENSOR REMARK 3 T11: 0.3053 T22: 0.4025 REMARK 3 T33: 0.2458 T12: 0.0578 REMARK 3 T13: 0.0071 T23: -0.0869 REMARK 3 L TENSOR REMARK 3 L11: 1.4939 L22: 0.1153 REMARK 3 L33: 0.9093 L12: 0.0298 REMARK 3 L13: -1.0230 L23: 0.1342 REMARK 3 S TENSOR REMARK 3 S11: 0.0478 S12: -0.6240 S13: -0.0806 REMARK 3 S21: 0.0319 S22: -0.1937 S23: 0.2569 REMARK 3 S31: -0.1314 S32: -0.0636 S33: -0.0005 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 230 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 71.7385 -1.5567 6.9221 REMARK 3 T TENSOR REMARK 3 T11: 0.2170 T22: 0.1383 REMARK 3 T33: 0.2307 T12: 0.0273 REMARK 3 T13: 0.0382 T23: 0.0347 REMARK 3 L TENSOR REMARK 3 L11: 2.0474 L22: 0.9604 REMARK 3 L33: 0.5987 L12: 0.5148 REMARK 3 L13: 0.0037 L23: -0.7526 REMARK 3 S TENSOR REMARK 3 S11: -0.1148 S12: -0.1895 S13: -0.2082 REMARK 3 S21: -0.1127 S22: 0.0429 S23: 0.0100 REMARK 3 S31: 0.1016 S32: -0.0311 S33: -0.0934 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 275 THROUGH 287 ) REMARK 3 ORIGIN FOR THE GROUP (A): 57.4514 2.2259 -3.9040 REMARK 3 T TENSOR REMARK 3 T11: 0.3148 T22: 0.4535 REMARK 3 T33: 0.2720 T12: 0.0176 REMARK 3 T13: -0.0076 T23: -0.0204 REMARK 3 L TENSOR REMARK 3 L11: 0.0052 L22: 0.0133 REMARK 3 L33: 0.0043 L12: 0.0139 REMARK 3 L13: 0.0065 L23: 0.0194 REMARK 3 S TENSOR REMARK 3 S11: 0.1041 S12: 0.6186 S13: -0.2262 REMARK 3 S21: 0.0432 S22: -0.0700 S23: -0.1020 REMARK 3 S31: 0.2879 S32: -0.2112 S33: 0.0000 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 96 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.3484 17.7804 -0.4439 REMARK 3 T TENSOR REMARK 3 T11: 0.3887 T22: 0.4976 REMARK 3 T33: 0.3346 T12: 0.1515 REMARK 3 T13: -0.0597 T23: -0.0142 REMARK 3 L TENSOR REMARK 3 L11: 0.0333 L22: 0.1460 REMARK 3 L33: 0.5900 L12: 0.0381 REMARK 3 L13: -0.0479 L23: -0.2828 REMARK 3 S TENSOR REMARK 3 S11: -0.0776 S12: 0.3332 S13: 0.4456 REMARK 3 S21: 0.0023 S22: 0.1908 S23: -0.0417 REMARK 3 S31: -0.0173 S32: -0.2103 S33: 0.0076 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 110 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.8376 5.0172 7.7803 REMARK 3 T TENSOR REMARK 3 T11: 0.2596 T22: 0.4836 REMARK 3 T33: 0.2543 T12: 0.0377 REMARK 3 T13: -0.0233 T23: -0.0279 REMARK 3 L TENSOR REMARK 3 L11: 0.8961 L22: 0.2453 REMARK 3 L33: 0.1256 L12: -0.0302 REMARK 3 L13: 0.3570 L23: 0.0610 REMARK 3 S TENSOR REMARK 3 S11: -0.0120 S12: 0.0027 S13: -0.1536 REMARK 3 S21: -0.0724 S22: 0.0058 S23: 0.1020 REMARK 3 S31: -0.0468 S32: 0.1453 S33: 0.0009 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 156 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5064 14.6282 16.5204 REMARK 3 T TENSOR REMARK 3 T11: 0.2706 T22: 0.4035 REMARK 3 T33: 0.2668 T12: 0.0055 REMARK 3 T13: -0.0254 T23: -0.0815 REMARK 3 L TENSOR REMARK 3 L11: 0.5623 L22: 0.7057 REMARK 3 L33: 0.4146 L12: 0.1328 REMARK 3 L13: -0.4034 L23: -0.2036 REMARK 3 S TENSOR REMARK 3 S11: 0.0641 S12: -0.2425 S13: 0.2990 REMARK 3 S21: -0.0001 S22: -0.0896 S23: -0.0684 REMARK 3 S31: -0.1933 S32: 0.4180 S33: 0.0178 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 181 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.5580 2.8238 18.6204 REMARK 3 T TENSOR REMARK 3 T11: 0.2616 T22: 0.4461 REMARK 3 T33: 0.2516 T12: 0.0926 REMARK 3 T13: 0.0310 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.6107 L22: 0.2480 REMARK 3 L33: 0.7436 L12: -0.2609 REMARK 3 L13: 0.5554 L23: -0.0642 REMARK 3 S TENSOR REMARK 3 S11: -0.2966 S12: -0.0033 S13: 0.0413 REMARK 3 S21: 0.0323 S22: -0.0268 S23: -0.1741 REMARK 3 S31: 0.2160 S32: 0.8360 S33: -0.1174 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 195 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.0754 7.6554 8.2312 REMARK 3 T TENSOR REMARK 3 T11: 0.2587 T22: 0.2482 REMARK 3 T33: 0.3120 T12: 0.0024 REMARK 3 T13: -0.0043 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 0.3378 L22: 0.2900 REMARK 3 L33: 0.1284 L12: -0.3316 REMARK 3 L13: -0.0708 L23: 0.1264 REMARK 3 S TENSOR REMARK 3 S11: -0.0651 S12: 0.0765 S13: 0.0877 REMARK 3 S21: -0.1116 S22: -0.0693 S23: -0.2620 REMARK 3 S31: 0.0680 S32: 0.0014 S33: 0.0000 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 214 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.2554 5.3905 9.7348 REMARK 3 T TENSOR REMARK 3 T11: 0.2166 T22: 0.4478 REMARK 3 T33: 0.2358 T12: 0.0159 REMARK 3 T13: -0.0241 T23: -0.0921 REMARK 3 L TENSOR REMARK 3 L11: 0.8476 L22: 1.0456 REMARK 3 L33: 0.2506 L12: -0.1871 REMARK 3 L13: -0.2327 L23: -0.4318 REMARK 3 S TENSOR REMARK 3 S11: -0.1087 S12: -0.2079 S13: -0.0528 REMARK 3 S21: -0.0586 S22: -0.1524 S23: 0.0935 REMARK 3 S31: -0.1643 S32: -0.5091 S33: -0.1638 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 251 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.0218 13.3026 5.1996 REMARK 3 T TENSOR REMARK 3 T11: 0.2648 T22: 0.4138 REMARK 3 T33: 0.2812 T12: 0.0369 REMARK 3 T13: -0.0432 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 0.3380 L22: 0.2217 REMARK 3 L33: 0.0583 L12: -0.3098 REMARK 3 L13: 0.1462 L23: -0.1293 REMARK 3 S TENSOR REMARK 3 S11: -0.0717 S12: -0.0520 S13: 0.2154 REMARK 3 S21: -0.0016 S22: -0.0743 S23: 0.0379 REMARK 3 S31: -0.0779 S32: -0.0268 S33: 0.0000 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 275 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.4815 7.7728 22.1134 REMARK 3 T TENSOR REMARK 3 T11: 0.3127 T22: 0.7140 REMARK 3 T33: 0.2549 T12: 0.0867 REMARK 3 T13: -0.0115 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 0.0790 L22: 0.1844 REMARK 3 L33: 0.2311 L12: 0.1143 REMARK 3 L13: -0.1389 L23: -0.1829 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: -0.7022 S13: -0.0207 REMARK 3 S21: 0.0534 S22: -0.2018 S23: -0.0681 REMARK 3 S31: -0.1158 S32: 0.3602 S33: -0.2508 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 96 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.2613 11.6491 -47.4034 REMARK 3 T TENSOR REMARK 3 T11: 0.3801 T22: 0.6343 REMARK 3 T33: 0.3192 T12: 0.0865 REMARK 3 T13: -0.0038 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 0.4839 L22: 0.1541 REMARK 3 L33: 0.6318 L12: 0.0511 REMARK 3 L13: -0.5620 L23: -0.0944 REMARK 3 S TENSOR REMARK 3 S11: 0.3104 S12: 0.9928 S13: 0.2245 REMARK 3 S21: -0.0273 S22: -0.1223 S23: -0.1476 REMARK 3 S31: -0.5113 S32: -0.6793 S33: 0.0587 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 110 THROUGH 131 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1192 4.9114 -30.6746 REMARK 3 T TENSOR REMARK 3 T11: 0.2549 T22: 0.3448 REMARK 3 T33: 0.2891 T12: 0.0082 REMARK 3 T13: 0.0249 T23: -0.0293 REMARK 3 L TENSOR REMARK 3 L11: 0.4076 L22: 0.0065 REMARK 3 L33: 0.0119 L12: -0.0565 REMARK 3 L13: 0.0443 L23: -0.0438 REMARK 3 S TENSOR REMARK 3 S11: 0.0097 S12: -0.1001 S13: -0.1019 REMARK 3 S21: -0.0237 S22: 0.1390 S23: -0.0125 REMARK 3 S31: -0.0262 S32: 0.2889 S33: 0.0000 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 132 THROUGH 168 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3191 7.6964 -36.4944 REMARK 3 T TENSOR REMARK 3 T11: 0.2179 T22: 0.2557 REMARK 3 T33: 0.2428 T12: -0.0251 REMARK 3 T13: 0.0166 T23: -0.0205 REMARK 3 L TENSOR REMARK 3 L11: 1.4821 L22: 0.6467 REMARK 3 L33: 0.5369 L12: -0.5404 REMARK 3 L13: -0.1731 L23: 0.0172 REMARK 3 S TENSOR REMARK 3 S11: 0.1402 S12: 0.4097 S13: 0.0383 REMARK 3 S21: 0.1422 S22: -0.1060 S23: 0.0381 REMARK 3 S31: 0.0120 S32: -0.3706 S33: 0.0645 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 169 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.1507 16.3732 -25.5278 REMARK 3 T TENSOR REMARK 3 T11: 0.3980 T22: 0.3927 REMARK 3 T33: 0.3938 T12: -0.0974 REMARK 3 T13: -0.0085 T23: -0.0722 REMARK 3 L TENSOR REMARK 3 L11: 0.0861 L22: 0.0716 REMARK 3 L33: 0.0760 L12: -0.0182 REMARK 3 L13: -0.0863 L23: 0.0311 REMARK 3 S TENSOR REMARK 3 S11: 0.2299 S12: -0.3979 S13: 0.6267 REMARK 3 S21: 0.4199 S22: -0.1654 S23: 0.1033 REMARK 3 S31: -0.3830 S32: -0.0081 S33: 0.0006 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 181 THROUGH 194 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.8061 5.4266 -26.1149 REMARK 3 T TENSOR REMARK 3 T11: 0.2869 T22: 0.3244 REMARK 3 T33: 0.2729 T12: -0.0088 REMARK 3 T13: -0.0463 T23: -0.0183 REMARK 3 L TENSOR REMARK 3 L11: 0.0477 L22: 0.0168 REMARK 3 L33: 0.0195 L12: -0.0316 REMARK 3 L13: -0.0057 L23: -0.0046 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.2403 S13: 0.0570 REMARK 3 S21: 0.2545 S22: 0.1289 S23: -0.0738 REMARK 3 S31: -0.0588 S32: 0.2266 S33: 0.0000 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 195 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.6219 6.3100 -34.7279 REMARK 3 T TENSOR REMARK 3 T11: 0.2136 T22: 0.1488 REMARK 3 T33: 0.2416 T12: -0.0264 REMARK 3 T13: 0.0070 T23: 0.0586 REMARK 3 L TENSOR REMARK 3 L11: 0.7243 L22: 0.3615 REMARK 3 L33: 0.0919 L12: -0.4994 REMARK 3 L13: -0.1740 L23: 0.0171 REMARK 3 S TENSOR REMARK 3 S11: 0.0010 S12: 0.0848 S13: 0.1065 REMARK 3 S21: -0.0326 S22: -0.1384 S23: -0.2061 REMARK 3 S31: 0.0273 S32: 0.1464 S33: -0.0372 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 214 THROUGH 236 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8601 -0.8856 -37.8721 REMARK 3 T TENSOR REMARK 3 T11: 0.2327 T22: 0.2396 REMARK 3 T33: 0.2980 T12: -0.0600 REMARK 3 T13: 0.0239 T23: -0.1042 REMARK 3 L TENSOR REMARK 3 L11: 0.9610 L22: 0.0610 REMARK 3 L33: 0.2890 L12: -0.0749 REMARK 3 L13: -0.2183 L23: 0.1532 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: 0.4181 S13: -0.3028 REMARK 3 S21: 0.1422 S22: -0.1722 S23: 0.0463 REMARK 3 S31: 0.0728 S32: -0.2609 S33: -0.0863 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 237 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.5019 16.6273 -22.0718 REMARK 3 T TENSOR REMARK 3 T11: 0.5537 T22: 0.4597 REMARK 3 T33: 0.2491 T12: -0.0678 REMARK 3 T13: 0.0341 T23: -0.0958 REMARK 3 L TENSOR REMARK 3 L11: 1.5704 L22: 0.0513 REMARK 3 L33: 0.0074 L12: 0.2878 REMARK 3 L13: -0.1393 L23: -0.0366 REMARK 3 S TENSOR REMARK 3 S11: 0.1889 S12: -0.7272 S13: -0.0183 REMARK 3 S21: 0.5397 S22: -0.1758 S23: -0.0621 REMARK 3 S31: -0.1262 S32: 0.0025 S33: 0.0397 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 251 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.8128 9.9875 -40.0898 REMARK 3 T TENSOR REMARK 3 T11: 0.2339 T22: 0.3390 REMARK 3 T33: 0.2165 T12: 0.0274 REMARK 3 T13: 0.0001 T23: -0.0047 REMARK 3 L TENSOR REMARK 3 L11: 0.4814 L22: 0.3242 REMARK 3 L33: 0.0441 L12: 0.0501 REMARK 3 L13: 0.1617 L23: 0.0690 REMARK 3 S TENSOR REMARK 3 S11: 0.1949 S12: 0.4041 S13: 0.1717 REMARK 3 S21: -0.0156 S22: -0.1523 S23: 0.0575 REMARK 3 S31: -0.1239 S32: -0.1422 S33: 0.0048 REMARK 3 TLS GROUP : 31 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 275 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8783 11.7967 -21.9119 REMARK 3 T TENSOR REMARK 3 T11: 0.3322 T22: 0.4202 REMARK 3 T33: 0.3318 T12: -0.0357 REMARK 3 T13: 0.0522 T23: -0.1039 REMARK 3 L TENSOR REMARK 3 L11: 0.0747 L22: 0.0792 REMARK 3 L33: 0.0177 L12: -0.0898 REMARK 3 L13: -0.0184 L23: 0.0011 REMARK 3 S TENSOR REMARK 3 S11: 0.0817 S12: -0.7233 S13: 0.3746 REMARK 3 S21: -0.0277 S22: -0.0744 S23: -0.0584 REMARK 3 S31: 0.0678 S32: -0.1862 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7B47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292111694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97200 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76162 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.49300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4IBS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M LI ACETATE, 16% W/V PEG 3350, PH REMARK 280 6.1, EVAPORATION, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.50000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 94 REMARK 465 SER A 95 REMARK 465 SER A 96 REMARK 465 CYS A 182 REMARK 465 SER A 183 REMARK 465 ASP A 184 REMARK 465 LEU A 289 REMARK 465 ARG A 290 REMARK 465 LYS A 291 REMARK 465 LYS A 292 REMARK 465 GLY A 293 REMARK 465 SER B 94 REMARK 465 SER B 95 REMARK 465 SER B 96 REMARK 465 ASN B 288 REMARK 465 LEU B 289 REMARK 465 ARG B 290 REMARK 465 LYS B 291 REMARK 465 LYS B 292 REMARK 465 GLY B 293 REMARK 465 SER C 94 REMARK 465 SER C 95 REMARK 465 SER C 183 REMARK 465 ASP C 184 REMARK 465 LEU C 289 REMARK 465 ARG C 290 REMARK 465 LYS C 291 REMARK 465 LYS C 292 REMARK 465 GLY C 293 REMARK 465 SER D 94 REMARK 465 SER D 95 REMARK 465 CYS D 182 REMARK 465 SER D 183 REMARK 465 ASP D 184 REMARK 465 GLU D 224 REMARK 465 VAL D 225 REMARK 465 GLY D 226 REMARK 465 LEU D 289 REMARK 465 ARG D 290 REMARK 465 LYS D 291 REMARK 465 LYS D 292 REMARK 465 GLY D 293 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 101 CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 139 CD CE NZ REMARK 470 LYS A 164 NZ REMARK 470 GLN A 167 CD OE1 NE2 REMARK 470 HIS A 178 CG ND1 CD2 CE1 NE2 REMARK 470 ARG A 181 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 201 CD1 CD2 REMARK 470 GLU A 221 OE1 OE2 REMARK 470 VAL A 225 CG1 CG2 REMARK 470 ASP A 228 CG OD1 OD2 REMARK 470 MET A 243 CG SD CE REMARK 470 ARG A 248 CD NE CZ NH1 NH2 REMARK 470 ARG A 280 CD NE CZ NH1 NH2 REMARK 470 GLU A 287 CD OE1 OE2 REMARK 470 LYS B 101 CG CD CE NZ REMARK 470 TYR B 103 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG B 110 CZ NH1 NH2 REMARK 470 LYS B 120 CG CD CE NZ REMARK 470 LYS B 139 NZ REMARK 470 ASP B 184 CG OD1 OD2 REMARK 470 ARG B 209 CD NE CZ NH1 NH2 REMARK 470 GLU B 221 CD OE1 OE2 REMARK 470 VAL B 225 CB CG1 CG2 REMARK 470 ASP B 228 CG OD1 OD2 REMARK 470 ARG B 248 NE CZ NH1 NH2 REMARK 470 ARG B 280 CD NE CZ NH1 NH2 REMARK 470 GLU B 287 CD OE1 OE2 REMARK 470 LYS C 101 CD CE NZ REMARK 470 LYS C 120 CG CD CE NZ REMARK 470 LYS C 139 NZ REMARK 470 SER C 166 OG REMARK 470 LEU C 201 CG CD1 CD2 REMARK 470 GLU C 221 CD OE1 OE2 REMARK 470 GLU C 224 CG CD OE1 OE2 REMARK 470 MET C 243 SD CE REMARK 470 ARG C 280 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 287 CD OE1 OE2 REMARK 470 LYS D 101 CD CE NZ REMARK 470 LYS D 120 CG CD CE NZ REMARK 470 LYS D 139 CD CE NZ REMARK 470 LYS D 164 NZ REMARK 470 GLU D 180 CD OE1 OE2 REMARK 470 ARG D 181 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 201 CG CD1 CD2 REMARK 470 ARG D 209 CG CD NE CZ NH1 NH2 REMARK 470 SER D 227 OG REMARK 470 ASP D 228 CG OD1 OD2 REMARK 470 MET D 243 SD CE REMARK 470 ARG D 248 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 138 19.01 59.80 REMARK 500 HIS C 115 78.00 -103.77 REMARK 500 ASN C 131 55.96 39.32 REMARK 500 ASP D 228 -7.36 83.90 REMARK 500 CYS D 242 108.99 -52.35 REMARK 500 CYS D 242 108.98 -52.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 TWO ENANTIOMERS, QNN AND QN8 ARE PRODUCED BY REACTION OF THE REMARK 600 MICHAEL ACCEPTOR COMPOUND "2-METHYLENEQUINUCLIDIN-3-ONE" WITH REMARK 600 CYSTEINE OR LYSINE. AS SUCH, QNN AND QN8 BIND COVALENTLY TO THE REMARK 600 THIOL GROUP OF CYSTEINE OR AMINO GROUP OF LYSINE. THE CHIRAL REMARK 600 DEFINITIONS OF QNN AND QN8 BOUND TO CYSTEINES ARE REVERSED TO THAT REMARK 600 OF THE PSEUDO FREE LIGANDS. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 111.1 REMARK 620 3 CYS A 238 SG 112.4 112.7 REMARK 620 4 CYS A 238 SG 111.7 112.0 1.5 REMARK 620 5 CYS A 242 SG 111.5 93.0 114.8 116.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 HIS B 179 ND1 103.5 REMARK 620 3 CYS B 238 SG 114.1 105.7 REMARK 620 4 CYS B 242 SG 114.6 100.9 115.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 176 SG REMARK 620 2 HIS C 179 ND1 102.8 REMARK 620 3 CYS C 238 SG 112.0 107.1 REMARK 620 4 CYS C 242 SG 113.7 99.3 119.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 176 SG REMARK 620 2 HIS D 179 ND1 104.3 REMARK 620 3 CYS D 238 SG 112.4 115.0 REMARK 620 4 CYS D 238 SG 113.1 116.9 2.6 REMARK 620 5 CYS D 242 SG 112.9 95.3 115.3 112.9 REMARK 620 N 1 2 3 4 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6ZNC RELATED DB: PDB REMARK 900 PROTEIN-DNA COMPLEX REMARK 900 RELATED ID: 7B49 RELATED DB: PDB REMARK 900 PROTEIN-DNA COMPLEX REMARK 900 RELATED ID: 7B4A RELATED DB: PDB REMARK 900 PROTEIN-DNA COMPLEX REMARK 900 RELATED ID: 7B4B RELATED DB: PDB REMARK 900 RELATED ID: 7B4D RELATED DB: PDB REMARK 900 PROTEIN-DNA COMPLEX REMARK 900 RELATED ID: 7B4E RELATED DB: PDB REMARK 900 PROTEIN-DNA COMPLEX REMARK 900 RELATED ID: 7B4F RELATED DB: PDB REMARK 900 PROTEIN-DNA COMPLEX REMARK 900 RELATED ID: 7B4G RELATED DB: PDB REMARK 900 PROTEIN-DNA COMPLEX REMARK 900 RELATED ID: 7B4N RELATED DB: PDB REMARK 900 PROTEIN-DNA COMPLEX REMARK 900 RELATED ID: 7B4H RELATED DB: PDB REMARK 900 PROTEIN-DNA COMPLEX REMARK 900 RELATED ID: 7B46 RELATED DB: PDB REMARK 900 PROTEIN-DNA COMPLEX REMARK 900 RELATED ID: 7B48 RELATED DB: PDB REMARK 900 RELATED ID: 7B4C RELATED DB: PDB DBREF 7B47 A 94 293 UNP P04637 P53_HUMAN 94 293 DBREF 7B47 B 94 293 UNP P04637 P53_HUMAN 94 293 DBREF 7B47 C 94 293 UNP P04637 P53_HUMAN 94 293 DBREF 7B47 D 94 293 UNP P04637 P53_HUMAN 94 293 SEQADV 7B47 HIS A 273 UNP P04637 ARG 273 ENGINEERED MUTATION SEQADV 7B47 HIS B 273 UNP P04637 ARG 273 ENGINEERED MUTATION SEQADV 7B47 HIS C 273 UNP P04637 ARG 273 ENGINEERED MUTATION SEQADV 7B47 HIS D 273 UNP P04637 ARG 273 ENGINEERED MUTATION SEQRES 1 A 200 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 A 200 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 A 200 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 A 200 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 A 200 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 A 200 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 A 200 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 A 200 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 A 200 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 A 200 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 A 200 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 A 200 MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 A 200 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 A 200 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL HIS VAL CYS SEQRES 15 A 200 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 A 200 LEU ARG LYS LYS GLY SEQRES 1 B 200 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 B 200 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 B 200 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 B 200 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 B 200 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 B 200 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 B 200 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 B 200 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 B 200 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 B 200 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 B 200 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 B 200 MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 B 200 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 B 200 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL HIS VAL CYS SEQRES 15 B 200 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 B 200 LEU ARG LYS LYS GLY SEQRES 1 C 200 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 C 200 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 C 200 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 C 200 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 C 200 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 C 200 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 C 200 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 C 200 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 C 200 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 C 200 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 C 200 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 C 200 MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 C 200 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 C 200 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL HIS VAL CYS SEQRES 15 C 200 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 C 200 LEU ARG LYS LYS GLY SEQRES 1 D 200 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 D 200 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 D 200 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 D 200 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 D 200 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG VAL ARG SEQRES 6 D 200 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 D 200 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 D 200 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 D 200 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 D 200 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 D 200 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN TYR SEQRES 12 D 200 MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 D 200 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 D 200 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL HIS VAL CYS SEQRES 15 D 200 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 D 200 LEU ARG LYS LYS GLY HET ZN A 301 1 HET QN8 A 302 10 HET QN8 A 303 10 HET ZN B 301 1 HET QNN B 302 10 HET QN8 B 303 10 HET QNN B 304 10 HET ZN C 301 1 HET QNN C 302 10 HET ZN D 301 1 HET QN8 D 302 10 HET QN8 D 303 10 HET QNN D 304 10 HET QN8 D 305 10 HETNAM ZN ZINC ION HETNAM QN8 (2~{R})-2-METHYL-1-AZABICYCLO[2.2.2]OCTAN-3-ONE HETNAM QNN (2~{S})-2-METHYL-1-AZABICYCLO[2.2.2]OCTAN-3-ONE FORMUL 5 ZN 4(ZN 2+) FORMUL 6 QN8 6(C8 H13 N O) FORMUL 9 QNN 4(C8 H13 N O) FORMUL 19 HOH *422(H2 O) HELIX 1 AA1 CYS A 176 ARG A 181 1 6 HELIX 2 AA2 CYS A 277 GLU A 287 1 11 HELIX 3 AA3 CYS B 176 ARG B 181 1 6 HELIX 4 AA4 CYS B 277 GLU B 287 1 11 HELIX 5 AA5 GLN C 165 MET C 169 5 5 HELIX 6 AA6 CYS C 176 ARG C 181 1 6 HELIX 7 AA7 CYS C 277 ASN C 288 1 12 HELIX 8 AA8 CYS D 176 ARG D 181 1 6 HELIX 9 AA9 CYS D 277 ASN D 288 1 12 SHEET 1 AA1 4 ARG A 110 GLY A 112 0 SHEET 2 AA1 4 CYS A 141 TRP A 146 -1 O GLN A 144 N GLY A 112 SHEET 3 AA1 4 THR A 230 TYR A 236 -1 O THR A 230 N LEU A 145 SHEET 4 AA1 4 ILE A 195 VAL A 197 -1 N ARG A 196 O ASN A 235 SHEET 1 AA2 7 CYS A 124 SER A 127 0 SHEET 2 AA2 7 LYS A 132 CYS A 135 -1 O LYS A 132 N SER A 127 SHEET 3 AA2 7 LEU A 264 VAL A 274 1 O GLU A 271 N MET A 133 SHEET 4 AA2 7 ILE A 251 GLU A 258 -1 N THR A 253 O PHE A 270 SHEET 5 AA2 7 ARG A 156 TYR A 163 -1 N MET A 160 O ILE A 254 SHEET 6 AA2 7 HIS A 214 PRO A 219 -1 O VAL A 218 N VAL A 157 SHEET 7 AA2 7 GLU A 204 ASP A 207 -1 N GLU A 204 O VAL A 217 SHEET 1 AA3 4 ARG B 110 GLY B 112 0 SHEET 2 AA3 4 CYS B 141 TRP B 146 -1 O TRP B 146 N ARG B 110 SHEET 3 AA3 4 THR B 230 TYR B 236 -1 O THR B 230 N LEU B 145 SHEET 4 AA3 4 ILE B 195 VAL B 197 -1 N ARG B 196 O ASN B 235 SHEET 1 AA4 7 CYS B 124 SER B 127 0 SHEET 2 AA4 7 LYS B 132 CYS B 135 -1 O LYS B 132 N SER B 127 SHEET 3 AA4 7 LEU B 264 VAL B 274 1 O GLU B 271 N MET B 133 SHEET 4 AA4 7 ILE B 251 GLU B 258 -1 N ILE B 255 O ASN B 268 SHEET 5 AA4 7 ARG B 156 TYR B 163 -1 N ARG B 156 O GLU B 258 SHEET 6 AA4 7 HIS B 214 PRO B 219 -1 O VAL B 218 N VAL B 157 SHEET 7 AA4 7 GLU B 204 ASP B 207 -1 N GLU B 204 O VAL B 217 SHEET 1 AA5 4 ARG C 110 GLY C 112 0 SHEET 2 AA5 4 CYS C 141 TRP C 146 -1 O TRP C 146 N ARG C 110 SHEET 3 AA5 4 THR C 230 TYR C 236 -1 O THR C 230 N LEU C 145 SHEET 4 AA5 4 ILE C 195 VAL C 197 -1 N ARG C 196 O ASN C 235 SHEET 1 AA6 7 CYS C 124 SER C 127 0 SHEET 2 AA6 7 LYS C 132 CYS C 135 -1 O LYS C 132 N SER C 127 SHEET 3 AA6 7 LEU C 264 VAL C 274 1 O GLU C 271 N MET C 133 SHEET 4 AA6 7 ILE C 251 GLU C 258 -1 N LEU C 257 O LEU C 265 SHEET 5 AA6 7 ARG C 156 TYR C 163 -1 N MET C 160 O ILE C 254 SHEET 6 AA6 7 HIS C 214 PRO C 219 -1 O VAL C 218 N VAL C 157 SHEET 7 AA6 7 GLU C 204 ASP C 207 -1 N GLU C 204 O VAL C 217 SHEET 1 AA7 4 ARG D 110 GLY D 112 0 SHEET 2 AA7 4 CYS D 141 TRP D 146 -1 O TRP D 146 N ARG D 110 SHEET 3 AA7 4 THR D 230 TYR D 236 -1 O THR D 230 N LEU D 145 SHEET 4 AA7 4 ILE D 195 VAL D 197 -1 N ARG D 196 O ASN D 235 SHEET 1 AA8 7 CYS D 124 SER D 127 0 SHEET 2 AA8 7 LYS D 132 CYS D 135 -1 O LYS D 132 N SER D 127 SHEET 3 AA8 7 LEU D 264 VAL D 274 1 O GLU D 271 N MET D 133 SHEET 4 AA8 7 ILE D 251 GLU D 258 -1 N LEU D 257 O LEU D 265 SHEET 5 AA8 7 ARG D 156 TYR D 163 -1 N ILE D 162 O LEU D 252 SHEET 6 AA8 7 HIS D 214 PRO D 219 -1 O VAL D 218 N VAL D 157 SHEET 7 AA8 7 GLU D 204 ASP D 207 -1 N GLU D 204 O VAL D 217 LINK SG ACYS A 229 C1 AQN8 A 302 1555 1555 1.81 LINK SG ACYS A 275 C1 AQN8 A 303 1555 1555 1.82 LINK SG ACYS B 182 C1 AQNN B 302 1555 1555 1.80 LINK SG ACYS B 229 C1 AQN8 B 303 1555 1555 1.82 LINK SG BCYS B 229 C1 BQNN B 304 1555 1555 1.81 LINK SG BCYS C 229 C1 BQNN C 302 1555 1555 1.80 LINK SG ACYS D 229 C1 AQN8 D 302 1555 1555 1.82 LINK SG BCYS D 275 C1 BQN8 D 303 1555 1555 1.80 LINK SG ACYS D 275 C1 AQNN D 304 1555 1555 1.82 LINK SG ACYS D 277 C1 AQN8 D 305 1555 1555 1.78 LINK SG CYS A 176 ZN ZN A 301 1555 1555 2.37 LINK ND1 HIS A 179 ZN ZN A 301 1555 1555 2.04 LINK SG ACYS A 238 ZN ZN A 301 1555 1555 2.29 LINK SG BCYS A 238 ZN ZN A 301 1555 1555 2.32 LINK SG CYS A 242 ZN ZN A 301 1555 1555 2.33 LINK SG CYS B 176 ZN ZN B 301 1555 1555 2.34 LINK ND1 HIS B 179 ZN ZN B 301 1555 1555 2.03 LINK SG CYS B 238 ZN ZN B 301 1555 1555 2.29 LINK SG CYS B 242 ZN ZN B 301 1555 1555 2.30 LINK SG CYS C 176 ZN ZN C 301 1555 1555 2.34 LINK ND1 HIS C 179 ZN ZN C 301 1555 1555 1.98 LINK SG CYS C 238 ZN ZN C 301 1555 1555 2.28 LINK SG CYS C 242 ZN ZN C 301 1555 1555 2.31 LINK SG CYS D 176 ZN ZN D 301 1555 1555 2.35 LINK ND1 HIS D 179 ZN ZN D 301 1555 1555 2.15 LINK SG ACYS D 238 ZN ZN D 301 1555 1555 2.35 LINK SG BCYS D 238 ZN ZN D 301 1555 1555 2.32 LINK SG CYS D 242 ZN ZN D 301 1555 1555 2.39 CRYST1 69.043 71.000 85.115 90.00 90.34 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014484 0.000000 0.000087 0.00000 SCALE2 0.000000 0.014085 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011749 0.00000