HEADER TRANSFERASE 02-DEC-20 7B4J TITLE THERMOSTABLE OMEGA TRANSAMINASE PJTA-R6 VARIANT W58M/F86L/R417L TITLE 2 ENGINEERED FOR ASYMMETRIC SYNTHESIS OF ENANTIOPURE BULKY AMINES COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE AMINOTRANSFERASE FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS SP.; SOURCE 3 ORGANISM_TAXID: 306; SOURCE 4 GENE: CMK94_18730, DIU04_17820; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS AMINOTRANSFERASE, TRANSAMINASE, AMINES SYNTHESIS, ENANTIOSELECTIVE, KEYWDS 2 THERMOSTABLE, ENGINEERED, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.CAPRA,H.J.ROZEBOOM,A.M.W.H.THUNNISSEN,D.B.JANSSEN REVDAT 2 22-SEP-21 7B4J 1 JRNL REMARK REVDAT 1 01-SEP-21 7B4J 0 JRNL AUTH Q.MENG,C.RAMIREZ-PALACIOS,N.CAPRA,M.E.HOOGHWINKEL, JRNL AUTH 2 S.THALLMAIR,H.J.ROZEBOOM,A.W.H.THUNNISSEN,H.J.WIJMA, JRNL AUTH 3 S.J.MARRINK,D.B.JANSSEN JRNL TITL COMPUTATIONAL REDESIGN OF AN OMEGA-TRANSAMINASE FROM JRNL TITL 2 PSEUDOMONAS JESSENII FOR ASYMMETRIC SYNTHESIS OF ENANTIOPURE JRNL TITL 3 BULKY AMINES. JRNL REF ACS CATALYSIS V. 11 10733 2021 JRNL REFN ESSN 2155-5435 JRNL PMID 34504735 JRNL DOI 10.1021/ACSCATAL.1C02053 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 83494 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 4254 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6146 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2800 REMARK 3 BIN FREE R VALUE SET COUNT : 328 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6901 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 382 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : 0.07000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.119 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.402 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7123 ; 0.008 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6625 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9658 ; 1.458 ; 1.633 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15372 ; 1.399 ; 1.566 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 905 ; 6.899 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 348 ;34.799 ;22.816 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1166 ;12.902 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;14.957 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 904 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8062 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1452 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 7 454 B 7 454 14515 0.080 0.050 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7B4J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292112556. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87797 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.73700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: REFMAC 5.8.0258 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: DROP WERE PREPARED BY MIXING 1UL OF REMARK 280 PROTEIN SOLUTION (~10 MG/ML IN 20 MM HEPES PH 7.5, 100 MM NACL, REMARK 280 AND 20 UM PLP BUFFER ) WITH 1UL OF RESERVOIR SOLUTION. THE REMARK 280 RESERVOIR CONTAINED 0.7-1M SUCCINIC ACID PH 7.6. CRYSTALS FORMED REMARK 280 AFTER 48H., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.35800 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 89.03700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.67900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28210 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLN A 3 REMARK 465 SER A 4 REMARK 465 VAL A 5 REMARK 465 SER A 6 REMARK 465 PRO A 456 REMARK 465 GLY A 457 REMARK 465 GLY A 458 REMARK 465 HIS A 459 REMARK 465 HIS A 460 REMARK 465 HIS A 461 REMARK 465 HIS A 462 REMARK 465 HIS A 463 REMARK 465 HIS A 464 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 GLN B 3 REMARK 465 SER B 4 REMARK 465 VAL B 5 REMARK 465 SER B 6 REMARK 465 HIS B 459 REMARK 465 HIS B 460 REMARK 465 HIS B 461 REMARK 465 HIS B 462 REMARK 465 HIS B 463 REMARK 465 HIS B 464 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 57 59.46 -119.95 REMARK 500 SER A 59 -33.74 -138.72 REMARK 500 SER A 65 45.21 -152.40 REMARK 500 THR A 79 -62.96 -98.07 REMARK 500 HIS A 88 -7.47 77.03 REMARK 500 THR A 239 -0.33 76.82 REMARK 500 PHE A 264 50.78 75.30 REMARK 500 GLN A 279 75.70 -116.49 REMARK 500 SER A 286 -162.04 -165.83 REMARK 500 LYS A 287 -100.30 55.91 REMARK 500 SER A 292 13.89 59.52 REMARK 500 HIS A 328 129.51 -39.59 REMARK 500 GLN A 396 -68.07 68.36 REMARK 500 CYS A 426 59.56 -154.97 REMARK 500 LEU B 57 57.77 -118.76 REMARK 500 SER B 59 -32.98 -136.79 REMARK 500 SER B 65 44.22 -152.58 REMARK 500 THR B 79 -64.02 -96.20 REMARK 500 HIS B 88 -5.79 78.29 REMARK 500 THR B 239 -0.21 76.30 REMARK 500 PHE B 264 49.87 77.37 REMARK 500 GLN B 279 75.81 -116.15 REMARK 500 SER B 286 -158.42 -165.63 REMARK 500 LYS B 287 -99.41 54.16 REMARK 500 SER B 292 14.07 59.97 REMARK 500 HIS B 328 126.58 -37.18 REMARK 500 GLN B 396 -143.60 55.15 REMARK 500 CYS B 426 61.27 -153.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B1413 DISTANCE = 6.31 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PMP A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SIN B 1101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PMP B 1102 DBREF1 7B4J A 1 455 UNP A0A2D8IND4_PSESP DBREF2 7B4J A A0A2D8IND4 1 455 DBREF1 7B4J B 1 455 UNP A0A2D8IND4_PSESP DBREF2 7B4J B A0A2D8IND4 1 455 SEQADV 7B4J ALA A 9 UNP A0A2D8IND PRO 9 ENGINEERED MUTATION SEQADV 7B4J GLN A 38 UNP A0A2D8IND GLU 38 ENGINEERED MUTATION SEQADV 7B4J MET A 58 UNP A0A2D8IND TRP 58 ENGINEERED MUTATION SEQADV 7B4J VAL A 60 UNP A0A2D8IND ALA 60 ENGINEERED MUTATION SEQADV 7B4J LEU A 86 UNP A0A2D8IND PHE 86 ENGINEERED MUTATION SEQADV 7B4J ASN A 87 UNP A0A2D8IND SER 87 ENGINEERED MUTATION SEQADV 7B4J PHE A 128 UNP A0A2D8IND MET 128 ENGINEERED MUTATION SEQADV 7B4J VAL A 154 UNP A0A2D8IND ILE 154 ENGINEERED MUTATION SEQADV 7B4J LEU A 417 UNP A0A2D8IND ARG 417 ENGINEERED MUTATION SEQADV 7B4J PRO A 456 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J GLY A 457 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J GLY A 458 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J HIS A 459 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J HIS A 460 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J HIS A 461 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J HIS A 462 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J HIS A 463 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J HIS A 464 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J ALA B 9 UNP A0A2D8IND PRO 9 ENGINEERED MUTATION SEQADV 7B4J GLN B 38 UNP A0A2D8IND GLU 38 ENGINEERED MUTATION SEQADV 7B4J MET B 58 UNP A0A2D8IND TRP 58 ENGINEERED MUTATION SEQADV 7B4J VAL B 60 UNP A0A2D8IND ALA 60 ENGINEERED MUTATION SEQADV 7B4J LEU B 86 UNP A0A2D8IND PHE 86 ENGINEERED MUTATION SEQADV 7B4J ASN B 87 UNP A0A2D8IND SER 87 ENGINEERED MUTATION SEQADV 7B4J PHE B 128 UNP A0A2D8IND MET 128 ENGINEERED MUTATION SEQADV 7B4J VAL B 154 UNP A0A2D8IND ILE 154 ENGINEERED MUTATION SEQADV 7B4J LEU B 417 UNP A0A2D8IND ARG 417 ENGINEERED MUTATION SEQADV 7B4J PRO B 456 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J GLY B 457 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J GLY B 458 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J HIS B 459 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J HIS B 460 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J HIS B 461 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J HIS B 462 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J HIS B 463 UNP A0A2D8IND EXPRESSION TAG SEQADV 7B4J HIS B 464 UNP A0A2D8IND EXPRESSION TAG SEQRES 1 A 464 MET ASN GLN SER VAL SER SER LEU ALA GLU LYS ASP ILE SEQRES 2 A 464 GLN TYR GLN LEU HIS PRO TYR THR ASN ALA ARG LEU HIS SEQRES 3 A 464 GLN GLU LEU GLY PRO LEU ILE ILE GLU ARG GLY GLN GLY SEQRES 4 A 464 ILE TYR VAL TYR ASP ASP GLN GLY LYS GLY TYR ILE GLU SEQRES 5 A 464 ALA MET ALA GLY LEU MET SER VAL ALA LEU GLY PHE SER SEQRES 6 A 464 ASN GLN ARG LEU ILE LYS ALA ALA GLU GLN GLN PHE ASN SEQRES 7 A 464 THR LEU PRO PHE TYR HIS LEU LEU ASN HIS LYS SER HIS SEQRES 8 A 464 ARG PRO SER ILE GLU LEU ALA GLU LYS LEU ILE GLU MET SEQRES 9 A 464 ALA PRO VAL PRO MET SER LYS VAL PHE PHE THR ASN SER SEQRES 10 A 464 GLY SER GLU ALA ASN ASP THR VAL VAL LYS PHE VAL TRP SEQRES 11 A 464 TYR LEU ASN ASN ALA LEU GLY LYS PRO ALA LYS LYS LYS SEQRES 12 A 464 PHE ILE SER ARG VAL ASN GLY TYR HIS GLY VAL THR VAL SEQRES 13 A 464 ALA SER ALA SER LEU THR GLY LEU PRO GLY ASN GLN ARG SEQRES 14 A 464 GLY PHE ASP LEU PRO LEU PRO GLY PHE LEU HIS VAL GLY SEQRES 15 A 464 CYS PRO HIS HIS TYR ARG PHE ALA LEU ALA GLY GLU SER SEQRES 16 A 464 GLU GLU HIS PHE ALA ASP ARG LEU ALA VAL GLU LEU GLU SEQRES 17 A 464 GLN LYS ILE LEU ALA GLU GLY PRO GLU THR ILE ALA ALA SEQRES 18 A 464 PHE ILE GLY GLU PRO LEU MET GLY ALA GLY GLY VAL ILE SEQRES 19 A 464 VAL PRO PRO ARG THR TYR TRP GLU LYS ILE GLN LYS VAL SEQRES 20 A 464 CYS ARG LYS TYR ASP ILE LEU VAL ILE ALA ASP GLU VAL SEQRES 21 A 464 ILE CYS GLY PHE GLY ARG THR GLY GLN MET PHE GLY SER SEQRES 22 A 464 GLN THR PHE GLY ILE GLN PRO ASP ILE MET VAL LEU SER SEQRES 23 A 464 LYS GLN LEU SER SER SER TYR GLN PRO ILE ALA ALA ILE SEQRES 24 A 464 LEU ILE ASN ALA PRO VAL PHE GLU GLY ILE ALA ASP GLN SEQRES 25 A 464 SER GLN ALA LEU GLY ALA LEU GLY HIS GLY PHE THR GLY SEQRES 26 A 464 SER GLY HIS PRO VAL ALA THR ALA VAL ALA LEU GLU ASN SEQRES 27 A 464 LEU LYS ILE ILE GLU GLU GLU SER LEU VAL GLU HIS ALA SEQRES 28 A 464 ALA GLN MET GLY GLN LEU LEU ARG SER GLY LEU GLN HIS SEQRES 29 A 464 PHE ILE ASP HIS PRO LEU VAL GLY GLU ILE ARG GLY CYS SEQRES 30 A 464 GLY LEU ILE ALA ALA VAL GLU LEU VAL GLY ASP ARG VAL SEQRES 31 A 464 SER LYS ALA PRO TYR GLN ALA LEU GLY THR LEU GLY ARG SEQRES 32 A 464 TYR MET ALA GLY ARG ALA GLN GLU HIS GLY MET ILE THR SEQRES 33 A 464 LEU ALA MET GLY ASP ALA VAL ALA PHE CYS PRO PRO LEU SEQRES 34 A 464 ILE VAL ASN GLU GLN GLU VAL GLY MET ILE VAL GLU ARG SEQRES 35 A 464 PHE ALA ARG ALA LEU ASP ASP THR THR GLN TRP VAL GLY SEQRES 36 A 464 PRO GLY GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 464 MET ASN GLN SER VAL SER SER LEU ALA GLU LYS ASP ILE SEQRES 2 B 464 GLN TYR GLN LEU HIS PRO TYR THR ASN ALA ARG LEU HIS SEQRES 3 B 464 GLN GLU LEU GLY PRO LEU ILE ILE GLU ARG GLY GLN GLY SEQRES 4 B 464 ILE TYR VAL TYR ASP ASP GLN GLY LYS GLY TYR ILE GLU SEQRES 5 B 464 ALA MET ALA GLY LEU MET SER VAL ALA LEU GLY PHE SER SEQRES 6 B 464 ASN GLN ARG LEU ILE LYS ALA ALA GLU GLN GLN PHE ASN SEQRES 7 B 464 THR LEU PRO PHE TYR HIS LEU LEU ASN HIS LYS SER HIS SEQRES 8 B 464 ARG PRO SER ILE GLU LEU ALA GLU LYS LEU ILE GLU MET SEQRES 9 B 464 ALA PRO VAL PRO MET SER LYS VAL PHE PHE THR ASN SER SEQRES 10 B 464 GLY SER GLU ALA ASN ASP THR VAL VAL LYS PHE VAL TRP SEQRES 11 B 464 TYR LEU ASN ASN ALA LEU GLY LYS PRO ALA LYS LYS LYS SEQRES 12 B 464 PHE ILE SER ARG VAL ASN GLY TYR HIS GLY VAL THR VAL SEQRES 13 B 464 ALA SER ALA SER LEU THR GLY LEU PRO GLY ASN GLN ARG SEQRES 14 B 464 GLY PHE ASP LEU PRO LEU PRO GLY PHE LEU HIS VAL GLY SEQRES 15 B 464 CYS PRO HIS HIS TYR ARG PHE ALA LEU ALA GLY GLU SER SEQRES 16 B 464 GLU GLU HIS PHE ALA ASP ARG LEU ALA VAL GLU LEU GLU SEQRES 17 B 464 GLN LYS ILE LEU ALA GLU GLY PRO GLU THR ILE ALA ALA SEQRES 18 B 464 PHE ILE GLY GLU PRO LEU MET GLY ALA GLY GLY VAL ILE SEQRES 19 B 464 VAL PRO PRO ARG THR TYR TRP GLU LYS ILE GLN LYS VAL SEQRES 20 B 464 CYS ARG LYS TYR ASP ILE LEU VAL ILE ALA ASP GLU VAL SEQRES 21 B 464 ILE CYS GLY PHE GLY ARG THR GLY GLN MET PHE GLY SER SEQRES 22 B 464 GLN THR PHE GLY ILE GLN PRO ASP ILE MET VAL LEU SER SEQRES 23 B 464 LYS GLN LEU SER SER SER TYR GLN PRO ILE ALA ALA ILE SEQRES 24 B 464 LEU ILE ASN ALA PRO VAL PHE GLU GLY ILE ALA ASP GLN SEQRES 25 B 464 SER GLN ALA LEU GLY ALA LEU GLY HIS GLY PHE THR GLY SEQRES 26 B 464 SER GLY HIS PRO VAL ALA THR ALA VAL ALA LEU GLU ASN SEQRES 27 B 464 LEU LYS ILE ILE GLU GLU GLU SER LEU VAL GLU HIS ALA SEQRES 28 B 464 ALA GLN MET GLY GLN LEU LEU ARG SER GLY LEU GLN HIS SEQRES 29 B 464 PHE ILE ASP HIS PRO LEU VAL GLY GLU ILE ARG GLY CYS SEQRES 30 B 464 GLY LEU ILE ALA ALA VAL GLU LEU VAL GLY ASP ARG VAL SEQRES 31 B 464 SER LYS ALA PRO TYR GLN ALA LEU GLY THR LEU GLY ARG SEQRES 32 B 464 TYR MET ALA GLY ARG ALA GLN GLU HIS GLY MET ILE THR SEQRES 33 B 464 LEU ALA MET GLY ASP ALA VAL ALA PHE CYS PRO PRO LEU SEQRES 34 B 464 ILE VAL ASN GLU GLN GLU VAL GLY MET ILE VAL GLU ARG SEQRES 35 B 464 PHE ALA ARG ALA LEU ASP ASP THR THR GLN TRP VAL GLY SEQRES 36 B 464 PRO GLY GLY HIS HIS HIS HIS HIS HIS HET PMP A1501 16 HET SIN B1101 8 HET PMP B1102 16 HETNAM PMP 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE HETNAM SIN SUCCINIC ACID HETSYN PMP PYRIDOXAMINE-5'-PHOSPHATE FORMUL 3 PMP 2(C8 H13 N2 O5 P) FORMUL 4 SIN C4 H6 O4 FORMUL 6 HOH *382(H2 O) HELIX 1 AA1 SER A 7 GLN A 16 1 10 HELIX 2 AA2 ASN A 22 GLY A 30 1 9 HELIX 3 AA3 MET A 54 SER A 59 1 6 HELIX 4 AA4 ASN A 66 LEU A 80 1 15 HELIX 5 AA5 HIS A 91 ALA A 105 1 15 HELIX 6 AA6 SER A 117 LEU A 136 1 20 HELIX 7 AA7 THR A 155 THR A 162 1 8 HELIX 8 AA8 LEU A 164 GLN A 168 5 5 HELIX 9 AA9 HIS A 185 ALA A 190 1 6 HELIX 10 AB1 SER A 195 GLY A 215 1 21 HELIX 11 AB2 THR A 239 TYR A 251 1 13 HELIX 12 AB3 PHE A 271 PHE A 276 1 6 HELIX 13 AB4 SER A 286 SER A 290 5 5 HELIX 14 AB5 ASN A 302 LEU A 316 1 15 HELIX 15 AB6 HIS A 328 GLU A 345 1 18 HELIX 16 AB7 SER A 346 HIS A 364 1 19 HELIX 17 AB8 GLY A 399 HIS A 412 1 14 HELIX 18 AB9 ASN A 432 GLY A 455 1 24 HELIX 19 AC1 LEU B 8 GLN B 16 1 9 HELIX 20 AC2 ASN B 22 GLY B 30 1 9 HELIX 21 AC3 MET B 54 SER B 59 1 6 HELIX 22 AC4 ASN B 66 ASN B 78 1 13 HELIX 23 AC5 LEU B 85 ASN B 87 5 3 HELIX 24 AC6 HIS B 91 ALA B 105 1 15 HELIX 25 AC7 SER B 117 LEU B 136 1 20 HELIX 26 AC8 ALA B 157 THR B 162 1 6 HELIX 27 AC9 LEU B 164 GLN B 168 5 5 HELIX 28 AD1 HIS B 185 ALA B 190 1 6 HELIX 29 AD2 SER B 195 GLY B 215 1 21 HELIX 30 AD3 THR B 239 TYR B 251 1 13 HELIX 31 AD4 PHE B 271 PHE B 276 1 6 HELIX 32 AD5 SER B 286 SER B 290 5 5 HELIX 33 AD6 ASN B 302 LEU B 316 1 15 HELIX 34 AD7 HIS B 328 GLU B 345 1 18 HELIX 35 AD8 SER B 346 HIS B 364 1 19 HELIX 36 AD9 GLY B 399 HIS B 412 1 14 HELIX 37 AE1 ASN B 432 GLY B 455 1 24 SHEET 1 AA1 5 MET A 414 ILE A 415 0 SHEET 2 AA1 5 GLY A 49 GLU A 52 1 N ILE A 51 O ILE A 415 SHEET 3 AA1 5 TYR A 41 ASP A 44 -1 N VAL A 42 O TYR A 50 SHEET 4 AA1 5 LEU A 32 GLN A 38 -1 N GLU A 35 O TYR A 43 SHEET 5 AA1 5 LYS B 89 SER B 90 1 O SER B 90 N ILE A 34 SHEET 1 AA2 5 LYS A 89 SER A 90 0 SHEET 2 AA2 5 LEU B 32 GLN B 38 1 O ILE B 34 N SER A 90 SHEET 3 AA2 5 TYR B 41 ASP B 44 -1 O TYR B 43 N GLU B 35 SHEET 4 AA2 5 GLY B 49 GLU B 52 -1 O TYR B 50 N VAL B 42 SHEET 5 AA2 5 MET B 414 ILE B 415 1 O ILE B 415 N ILE B 51 SHEET 1 AA3 7 LYS A 111 THR A 115 0 SHEET 2 AA3 7 ALA A 297 ILE A 301 -1 O ILE A 299 N PHE A 113 SHEET 3 AA3 7 ILE A 282 LEU A 285 -1 N LEU A 285 O ALA A 298 SHEET 4 AA3 7 LEU A 254 ASP A 258 1 N ALA A 257 O ILE A 282 SHEET 5 AA3 7 ILE A 219 GLY A 224 1 N PHE A 222 O ILE A 256 SHEET 6 AA3 7 LYS A 143 ARG A 147 1 N ILE A 145 O ALA A 221 SHEET 7 AA3 7 PHE A 178 VAL A 181 1 O LEU A 179 N PHE A 144 SHEET 1 AA4 4 VAL A 371 CYS A 377 0 SHEET 2 AA4 4 ILE A 380 LEU A 385 -1 O GLU A 384 N GLU A 373 SHEET 3 AA4 4 ALA A 422 PHE A 425 -1 O PHE A 425 N ALA A 381 SHEET 4 AA4 4 ALA A 418 MET A 419 -1 N MET A 419 O ALA A 422 SHEET 1 AA5 7 LYS B 111 THR B 115 0 SHEET 2 AA5 7 ALA B 297 ILE B 301 -1 O ALA B 297 N THR B 115 SHEET 3 AA5 7 ILE B 282 LEU B 285 -1 N LEU B 285 O ALA B 298 SHEET 4 AA5 7 LEU B 254 ASP B 258 1 N ALA B 257 O ILE B 282 SHEET 5 AA5 7 ILE B 219 GLY B 224 1 N PHE B 222 O ILE B 256 SHEET 6 AA5 7 LYS B 143 ARG B 147 1 N ILE B 145 O ALA B 221 SHEET 7 AA5 7 PHE B 178 VAL B 181 1 O LEU B 179 N PHE B 144 SHEET 1 AA6 4 VAL B 371 CYS B 377 0 SHEET 2 AA6 4 ILE B 380 LEU B 385 -1 O GLU B 384 N GLU B 373 SHEET 3 AA6 4 ALA B 422 PHE B 425 -1 O VAL B 423 N VAL B 383 SHEET 4 AA6 4 ALA B 418 MET B 419 -1 N MET B 419 O ALA B 422 CISPEP 1 LEU A 173 PRO A 174 0 0.11 CISPEP 2 LEU B 173 PRO B 174 0 1.69 SITE 1 AC1 16 SER A 117 GLY A 118 SER A 119 TYR A 151 SITE 2 AC1 16 HIS A 152 GLY A 153 GLU A 225 ASP A 258 SITE 3 AC1 16 VAL A 260 ILE A 261 LYS A 287 HOH A1617 SITE 4 AC1 16 HOH A1622 PHE B 323 THR B 324 HOH B1315 SITE 1 AC2 5 GLN B 38 TYR B 41 TYR B 43 HOH B1232 SITE 2 AC2 5 HOH B1281 SITE 1 AC3 16 PHE A 323 THR A 324 SER B 117 GLY B 118 SITE 2 AC3 16 SER B 119 TYR B 151 HIS B 152 GLU B 225 SITE 3 AC3 16 ASP B 258 VAL B 260 ILE B 261 LYS B 287 SITE 4 AC3 16 HOH B1204 HOH B1285 HOH B1300 HOH B1305 CRYST1 97.822 97.822 118.716 90.00 90.00 90.00 P 43 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010223 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010223 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008423 0.00000