HEADER DNA BINDING PROTEIN 03-DEC-20 7B5J TITLE ANTI-CRISPR ASSOCIATED (ACA) PROTEIN, ACA2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTI-CRISPR ASSOCIATED (ACA) PROTEIN, ACA2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PECTOBACTERIUM PHAGE ZF40; SOURCE 3 ORGANISM_TAXID: 1127516; SOURCE 4 GENE: ZF40_0030, ACA2; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS RNA-BINDING, DNA-BINDING, ANTI-CRISPR, REGULATOR, RNA BINDING KEYWDS 2 PROTEIN, ANTI-CRISPR ASSOCIATED (ACA) PROTEIN, DNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.USHER,N.BIRKHOLZ,P.C.FINERAN,T.R.BLOWER REVDAT 3 25-AUG-21 7B5J 1 HEADER KEYWDS REVDAT 2 30-JUN-21 7B5J 1 JRNL REVDAT 1 23-JUN-21 7B5J 0 JRNL AUTH B.USHER,N.BIRKHOLZ,I.N.BECK,R.D.FAGERLUND,S.A.JACKSON, JRNL AUTH 2 P.C.FINERAN,T.R.BLOWER JRNL TITL CRYSTAL STRUCTURE OF THE ANTI-CRISPR REPRESSOR ACA2. JRNL REF J.STRUCT.BIOL. V. 213 07752 2021 JRNL REFN ESSN 1095-8657 JRNL PMID 34116143 JRNL DOI 10.1016/J.JSB.2021.107752 REMARK 2 REMARK 2 RESOLUTION. 1.34 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2-3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.34 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 47804 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2340 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.1900 - 3.4400 1.00 2730 146 0.1604 0.1684 REMARK 3 2 3.4400 - 2.7300 1.00 2707 117 0.1427 0.1531 REMARK 3 3 2.7300 - 2.3900 1.00 2679 150 0.1337 0.1742 REMARK 3 4 2.3900 - 2.1700 1.00 2691 129 0.1216 0.1302 REMARK 3 5 2.1700 - 2.0100 1.00 2659 143 0.1234 0.1552 REMARK 3 6 2.0100 - 1.9000 1.00 2680 131 0.1325 0.1730 REMARK 3 7 1.9000 - 1.8000 1.00 2679 144 0.1365 0.1820 REMARK 3 8 1.8000 - 1.7200 1.00 2658 155 0.1394 0.2046 REMARK 3 9 1.7200 - 1.6600 1.00 2662 134 0.1462 0.2055 REMARK 3 10 1.6600 - 1.6000 1.00 2652 157 0.1590 0.1789 REMARK 3 11 1.6000 - 1.5500 1.00 2685 140 0.1645 0.2338 REMARK 3 12 1.5500 - 1.5000 1.00 2661 125 0.1644 0.2255 REMARK 3 13 1.5000 - 1.4700 1.00 2674 123 0.1724 0.2396 REMARK 3 14 1.4700 - 1.4300 1.00 2665 137 0.1857 0.2367 REMARK 3 15 1.4300 - 1.4000 1.00 2652 148 0.1941 0.2266 REMARK 3 16 1.4000 - 1.3700 1.00 2616 144 0.2070 0.2447 REMARK 3 17 1.3700 - 1.3400 1.00 2710 117 0.2132 0.2501 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1893 REMARK 3 ANGLE : 1.070 2557 REMARK 3 CHIRALITY : 0.069 276 REMARK 3 PLANARITY : 0.008 332 REMARK 3 DIHEDRAL : 17.455 712 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7B5J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292112694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER2 XE 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XIA2 REMARK 200 DATA SCALING SOFTWARE : XIA2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47804 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.340 REMARK 200 RESOLUTION RANGE LOW (A) : 38.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 13.50 REMARK 200 R MERGE (I) : 0.15880 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.2800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.34 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 13.30 REMARK 200 R MERGE FOR SHELL (I) : 1.68800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: AB INITIO PHASING REMARK 200 SOFTWARE USED: ARCIMBOLDO REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NEEDLE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM ACETATE TRIHYDRATE, 0.1 M REMARK 280 MES, 30% W/V PEG 8000, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.55150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMER REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMER REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 DBREF 7B5J A 2 116 UNP H9C180 H9C180_9CAUD 2 116 DBREF 7B5J B 2 116 UNP H9C180 H9C180_9CAUD 2 116 SEQRES 1 A 115 THR ASN LYS GLU LEU GLN ALA ILE ARG LYS LEU LEU MET SEQRES 2 A 115 LEU ASP VAL SER GLU ALA ALA GLU HIS ILE GLY ARG VAL SEQRES 3 A 115 SER ALA ARG SER TRP GLN TYR TRP GLU SER GLY ARG SER SEQRES 4 A 115 ALA VAL PRO ASP ASP VAL GLU GLN GLU MET LEU ASP LEU SEQRES 5 A 115 ALA SER VAL ARG ILE GLU MET MET SER ALA ILE ASP LYS SEQRES 6 A 115 ARG LEU ALA ASP GLY GLU ARG PRO LYS LEU ARG PHE TYR SEQRES 7 A 115 ASN LYS LEU ASP GLU TYR LEU ALA ASP ASN PRO ASP HIS SEQRES 8 A 115 ASN VAL ILE GLY TRP ARG LEU SER GLN SER VAL ALA ALA SEQRES 9 A 115 LEU TYR TYR THR GLU GLY HIS ALA ASP LEU ILE SEQRES 1 B 115 THR ASN LYS GLU LEU GLN ALA ILE ARG LYS LEU LEU MET SEQRES 2 B 115 LEU ASP VAL SER GLU ALA ALA GLU HIS ILE GLY ARG VAL SEQRES 3 B 115 SER ALA ARG SER TRP GLN TYR TRP GLU SER GLY ARG SER SEQRES 4 B 115 ALA VAL PRO ASP ASP VAL GLU GLN GLU MET LEU ASP LEU SEQRES 5 B 115 ALA SER VAL ARG ILE GLU MET MET SER ALA ILE ASP LYS SEQRES 6 B 115 ARG LEU ALA ASP GLY GLU ARG PRO LYS LEU ARG PHE TYR SEQRES 7 B 115 ASN LYS LEU ASP GLU TYR LEU ALA ASP ASN PRO ASP HIS SEQRES 8 B 115 ASN VAL ILE GLY TRP ARG LEU SER GLN SER VAL ALA ALA SEQRES 9 B 115 LEU TYR TYR THR GLU GLY HIS ALA ASP LEU ILE HET GOL A 201 14 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *265(H2 O) HELIX 1 AA1 THR A 2 LEU A 13 1 12 HELIX 2 AA2 ASP A 16 ILE A 24 1 9 HELIX 3 AA3 SER A 28 GLY A 38 1 11 HELIX 4 AA4 PRO A 43 ASP A 70 1 28 HELIX 5 AA5 LYS A 81 ASN A 89 1 9 HELIX 6 AA6 ASN A 93 GLU A 110 1 18 HELIX 7 AA7 ASN B 3 LEU B 13 1 11 HELIX 8 AA8 ASP B 16 ILE B 24 1 9 HELIX 9 AA9 SER B 28 SER B 37 1 10 HELIX 10 AB1 PRO B 43 ASP B 70 1 28 HELIX 11 AB2 LYS B 81 ASN B 89 1 9 HELIX 12 AB3 ASN B 93 GLU B 110 1 18 SHEET 1 AA1 2 LYS A 75 ARG A 77 0 SHEET 2 AA1 2 ASP A 114 ILE A 116 1 O ASP A 114 N LEU A 76 SHEET 1 AA2 2 LYS B 75 ARG B 77 0 SHEET 2 AA2 2 ASP B 114 ILE B 116 1 O ASP B 114 N LEU B 76 SITE 1 AC1 5 GLY A 25 ARG A 26 LEU A 68 HOH A 302 SITE 2 AC1 5 HOH A 321 CRYST1 39.791 67.103 42.240 90.00 106.33 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025131 0.000000 0.007364 0.00000 SCALE2 0.000000 0.014902 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024670 0.00000