data_7B6E # _entry.id 7B6E # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.391 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7B6E pdb_00007b6e 10.2210/pdb7b6e/pdb WWPDB D_1292112706 ? ? EMDB EMD-12053 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2021-06-09 2 'Structure model' 1 1 2021-06-16 3 'Structure model' 2 0 2021-06-23 4 'Structure model' 2 1 2021-07-07 5 'Structure model' 2 2 2024-05-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Database references' 5 3 'Structure model' 'Derived calculations' 6 3 'Structure model' 'Polymer sequence' 7 3 'Structure model' 'Source and taxonomy' 8 3 'Structure model' 'Structure summary' 9 4 'Structure model' 'Database references' 10 5 'Structure model' 'Data collection' 11 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 3 'Structure model' atom_site 4 3 'Structure model' citation 5 3 'Structure model' citation_author 6 3 'Structure model' entity 7 3 'Structure model' entity_poly 8 3 'Structure model' entity_poly_seq 9 3 'Structure model' entity_src_gen 10 3 'Structure model' pdbx_poly_seq_scheme 11 3 'Structure model' pdbx_unobs_or_zero_occ_residues 12 3 'Structure model' struct_conf 13 3 'Structure model' struct_ref 14 3 'Structure model' struct_ref_seq 15 4 'Structure model' citation 16 4 'Structure model' citation_author 17 5 'Structure model' chem_comp_atom 18 5 'Structure model' chem_comp_bond 19 5 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.page_first' 2 2 'Structure model' '_citation.page_last' 3 2 'Structure model' '_citation.pdbx_database_id_PubMed' 4 2 'Structure model' '_citation.title' 5 2 'Structure model' '_citation_author.identifier_ORCID' 6 3 'Structure model' '_atom_site.label_seq_id' 7 3 'Structure model' '_citation.journal_volume' 8 3 'Structure model' '_citation.page_first' 9 3 'Structure model' '_citation.page_last' 10 3 'Structure model' '_citation_author.identifier_ORCID' 11 3 'Structure model' '_entity.formula_weight' 12 3 'Structure model' '_entity_poly.pdbx_seq_one_letter_code' 13 3 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 14 3 'Structure model' '_entity_src_gen.pdbx_end_seq_num' 15 3 'Structure model' '_struct_conf.beg_label_seq_id' 16 3 'Structure model' '_struct_conf.end_label_seq_id' 17 3 'Structure model' '_struct_ref.pdbx_align_begin' 18 3 'Structure model' '_struct_ref.pdbx_seq_one_letter_code' 19 3 'Structure model' '_struct_ref_seq.db_align_beg' 20 3 'Structure model' '_struct_ref_seq.db_align_end' 21 3 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_beg' 22 3 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_end' 23 3 'Structure model' '_struct_ref_seq.seq_align_end' 24 4 'Structure model' '_citation.page_first' 25 4 'Structure model' '_citation.page_last' 26 4 'Structure model' '_citation_author.identifier_ORCID' 27 5 'Structure model' '_database_2.pdbx_DOI' 28 5 'Structure model' '_database_2.pdbx_database_accession' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7B6E _pdbx_database_status.recvd_initial_deposition_date 2020-12-07 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'Drosophila melanogaster TRAPP C8 subunits region 355 to 661' _pdbx_database_related.db_id EMD-12053 _pdbx_database_related.content_type 'associated EM volume' # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Galindo, A.' 1 0000-0002-1108-652X 'Munro, S.' 2 0000-0001-6160-5773 'Planelles-Herrero, V.J.' 3 0000-0002-1665-184X 'Degliesposti, G.' 4 0000-0001-6387-2533 # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country UK _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'Embo J.' _citation.journal_id_ASTM EMJODG _citation.journal_id_CSD 0897 _citation.journal_id_ISSN 1460-2075 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 40 _citation.language ? _citation.page_first e107608 _citation.page_last e107608 _citation.title 'Cryo-EM structure of metazoan TRAPPIII, the multi-subunit complex that activates the GTPase Rab1.' _citation.year 2021 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.15252/embj.2020107608 _citation.pdbx_database_id_PubMed 34018214 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Galindo, A.' 1 0000-0002-1108-652X primary 'Planelles-Herrero, V.J.' 2 ? primary 'Degliesposti, G.' 3 ? primary 'Munro, S.' 4 0000-0001-6160-5773 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description FI18195p1 _entity.formula_weight 35409.438 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Lethal (3) 76BDm,isoform A,isoform B' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DNLRHFVQDYAVRALIPYIEHLVAILAEGVTNKKGVSKSLLSATKRWFVTSKPGAGANNQNAVIYTNESAELQTRKLGDL YFMFGHYNLAFQSYHQAKRDFNADSAWQYYAGALEMAALSAFMLGTAQRKTYDYMEDAIVCYLTVCKLQQFATRATLLSM ECLKTARLYSEVAKQLIRMTNEESDLRSALLLEQAAYCFLVTQPPMHRKYAFHIVLAGNRYSRAGQRKHAYRCYRQAYQV FQKREWSLAEDHIQYTVAKQAYMLKQLEEASRSFAHLLRPGSLQSAQQQTSFLKEYIQTQNELVKRS ; _entity_poly.pdbx_seq_one_letter_code_can ;DNLRHFVQDYAVRALIPYIEHLVAILAEGVTNKKGVSKSLLSATKRWFVTSKPGAGANNQNAVIYTNESAELQTRKLGDL YFMFGHYNLAFQSYHQAKRDFNADSAWQYYAGALEMAALSAFMLGTAQRKTYDYMEDAIVCYLTVCKLQQFATRATLLSM ECLKTARLYSEVAKQLIRMTNEESDLRSALLLEQAAYCFLVTQPPMHRKYAFHIVLAGNRYSRAGQRKHAYRCYRQAYQV FQKREWSLAEDHIQYTVAKQAYMLKQLEEASRSFAHLLRPGSLQSAQQQTSFLKEYIQTQNELVKRS ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ASN n 1 3 LEU n 1 4 ARG n 1 5 HIS n 1 6 PHE n 1 7 VAL n 1 8 GLN n 1 9 ASP n 1 10 TYR n 1 11 ALA n 1 12 VAL n 1 13 ARG n 1 14 ALA n 1 15 LEU n 1 16 ILE n 1 17 PRO n 1 18 TYR n 1 19 ILE n 1 20 GLU n 1 21 HIS n 1 22 LEU n 1 23 VAL n 1 24 ALA n 1 25 ILE n 1 26 LEU n 1 27 ALA n 1 28 GLU n 1 29 GLY n 1 30 VAL n 1 31 THR n 1 32 ASN n 1 33 LYS n 1 34 LYS n 1 35 GLY n 1 36 VAL n 1 37 SER n 1 38 LYS n 1 39 SER n 1 40 LEU n 1 41 LEU n 1 42 SER n 1 43 ALA n 1 44 THR n 1 45 LYS n 1 46 ARG n 1 47 TRP n 1 48 PHE n 1 49 VAL n 1 50 THR n 1 51 SER n 1 52 LYS n 1 53 PRO n 1 54 GLY n 1 55 ALA n 1 56 GLY n 1 57 ALA n 1 58 ASN n 1 59 ASN n 1 60 GLN n 1 61 ASN n 1 62 ALA n 1 63 VAL n 1 64 ILE n 1 65 TYR n 1 66 THR n 1 67 ASN n 1 68 GLU n 1 69 SER n 1 70 ALA n 1 71 GLU n 1 72 LEU n 1 73 GLN n 1 74 THR n 1 75 ARG n 1 76 LYS n 1 77 LEU n 1 78 GLY n 1 79 ASP n 1 80 LEU n 1 81 TYR n 1 82 PHE n 1 83 MET n 1 84 PHE n 1 85 GLY n 1 86 HIS n 1 87 TYR n 1 88 ASN n 1 89 LEU n 1 90 ALA n 1 91 PHE n 1 92 GLN n 1 93 SER n 1 94 TYR n 1 95 HIS n 1 96 GLN n 1 97 ALA n 1 98 LYS n 1 99 ARG n 1 100 ASP n 1 101 PHE n 1 102 ASN n 1 103 ALA n 1 104 ASP n 1 105 SER n 1 106 ALA n 1 107 TRP n 1 108 GLN n 1 109 TYR n 1 110 TYR n 1 111 ALA n 1 112 GLY n 1 113 ALA n 1 114 LEU n 1 115 GLU n 1 116 MET n 1 117 ALA n 1 118 ALA n 1 119 LEU n 1 120 SER n 1 121 ALA n 1 122 PHE n 1 123 MET n 1 124 LEU n 1 125 GLY n 1 126 THR n 1 127 ALA n 1 128 GLN n 1 129 ARG n 1 130 LYS n 1 131 THR n 1 132 TYR n 1 133 ASP n 1 134 TYR n 1 135 MET n 1 136 GLU n 1 137 ASP n 1 138 ALA n 1 139 ILE n 1 140 VAL n 1 141 CYS n 1 142 TYR n 1 143 LEU n 1 144 THR n 1 145 VAL n 1 146 CYS n 1 147 LYS n 1 148 LEU n 1 149 GLN n 1 150 GLN n 1 151 PHE n 1 152 ALA n 1 153 THR n 1 154 ARG n 1 155 ALA n 1 156 THR n 1 157 LEU n 1 158 LEU n 1 159 SER n 1 160 MET n 1 161 GLU n 1 162 CYS n 1 163 LEU n 1 164 LYS n 1 165 THR n 1 166 ALA n 1 167 ARG n 1 168 LEU n 1 169 TYR n 1 170 SER n 1 171 GLU n 1 172 VAL n 1 173 ALA n 1 174 LYS n 1 175 GLN n 1 176 LEU n 1 177 ILE n 1 178 ARG n 1 179 MET n 1 180 THR n 1 181 ASN n 1 182 GLU n 1 183 GLU n 1 184 SER n 1 185 ASP n 1 186 LEU n 1 187 ARG n 1 188 SER n 1 189 ALA n 1 190 LEU n 1 191 LEU n 1 192 LEU n 1 193 GLU n 1 194 GLN n 1 195 ALA n 1 196 ALA n 1 197 TYR n 1 198 CYS n 1 199 PHE n 1 200 LEU n 1 201 VAL n 1 202 THR n 1 203 GLN n 1 204 PRO n 1 205 PRO n 1 206 MET n 1 207 HIS n 1 208 ARG n 1 209 LYS n 1 210 TYR n 1 211 ALA n 1 212 PHE n 1 213 HIS n 1 214 ILE n 1 215 VAL n 1 216 LEU n 1 217 ALA n 1 218 GLY n 1 219 ASN n 1 220 ARG n 1 221 TYR n 1 222 SER n 1 223 ARG n 1 224 ALA n 1 225 GLY n 1 226 GLN n 1 227 ARG n 1 228 LYS n 1 229 HIS n 1 230 ALA n 1 231 TYR n 1 232 ARG n 1 233 CYS n 1 234 TYR n 1 235 ARG n 1 236 GLN n 1 237 ALA n 1 238 TYR n 1 239 GLN n 1 240 VAL n 1 241 PHE n 1 242 GLN n 1 243 LYS n 1 244 ARG n 1 245 GLU n 1 246 TRP n 1 247 SER n 1 248 LEU n 1 249 ALA n 1 250 GLU n 1 251 ASP n 1 252 HIS n 1 253 ILE n 1 254 GLN n 1 255 TYR n 1 256 THR n 1 257 VAL n 1 258 ALA n 1 259 LYS n 1 260 GLN n 1 261 ALA n 1 262 TYR n 1 263 MET n 1 264 LEU n 1 265 LYS n 1 266 GLN n 1 267 LEU n 1 268 GLU n 1 269 GLU n 1 270 ALA n 1 271 SER n 1 272 ARG n 1 273 SER n 1 274 PHE n 1 275 ALA n 1 276 HIS n 1 277 LEU n 1 278 LEU n 1 279 ARG n 1 280 PRO n 1 281 GLY n 1 282 SER n 1 283 LEU n 1 284 GLN n 1 285 SER n 1 286 ALA n 1 287 GLN n 1 288 GLN n 1 289 GLN n 1 290 THR n 1 291 SER n 1 292 PHE n 1 293 LEU n 1 294 LYS n 1 295 GLU n 1 296 TYR n 1 297 ILE n 1 298 GLN n 1 299 THR n 1 300 GLN n 1 301 ASN n 1 302 GLU n 1 303 LEU n 1 304 VAL n 1 305 LYS n 1 306 ARG n 1 307 SER n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 307 _entity_src_gen.gene_src_common_name 'Fruit fly' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'l(3)76BDm, Dmel\CG8793, l(3)76BDm-RA, l(3)L3809, TRAPPC8, CG8793, Dmel_CG8793' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera aff. frugiperda 1 BOLD-2017' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 2449148 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 355 355 ASP ASP A . n A 1 2 ASN 2 356 356 ASN ASN A . n A 1 3 LEU 3 357 357 LEU LEU A . n A 1 4 ARG 4 358 358 ARG ARG A . n A 1 5 HIS 5 359 359 HIS HIS A . n A 1 6 PHE 6 360 360 PHE PHE A . n A 1 7 VAL 7 361 361 VAL VAL A . n A 1 8 GLN 8 362 362 GLN GLN A . n A 1 9 ASP 9 363 363 ASP ASP A . n A 1 10 TYR 10 364 364 TYR TYR A . n A 1 11 ALA 11 365 365 ALA ALA A . n A 1 12 VAL 12 366 366 VAL VAL A . n A 1 13 ARG 13 367 367 ARG ARG A . n A 1 14 ALA 14 368 368 ALA ALA A . n A 1 15 LEU 15 369 369 LEU LEU A . n A 1 16 ILE 16 370 370 ILE ILE A . n A 1 17 PRO 17 371 371 PRO PRO A . n A 1 18 TYR 18 372 372 TYR TYR A . n A 1 19 ILE 19 373 373 ILE ILE A . n A 1 20 GLU 20 374 374 GLU GLU A . n A 1 21 HIS 21 375 375 HIS HIS A . n A 1 22 LEU 22 376 376 LEU LEU A . n A 1 23 VAL 23 377 377 VAL VAL A . n A 1 24 ALA 24 378 378 ALA ALA A . n A 1 25 ILE 25 379 379 ILE ILE A . n A 1 26 LEU 26 380 380 LEU LEU A . n A 1 27 ALA 27 381 381 ALA ALA A . n A 1 28 GLU 28 382 382 GLU GLU A . n A 1 29 GLY 29 383 383 GLY GLY A . n A 1 30 VAL 30 384 384 VAL VAL A . n A 1 31 THR 31 385 385 THR THR A . n A 1 32 ASN 32 386 ? ? ? A . n A 1 33 LYS 33 387 ? ? ? A . n A 1 34 LYS 34 388 ? ? ? A . n A 1 35 GLY 35 389 ? ? ? A . n A 1 36 VAL 36 390 ? ? ? A . n A 1 37 SER 37 391 ? ? ? A . n A 1 38 LYS 38 392 ? ? ? A . n A 1 39 SER 39 393 ? ? ? A . n A 1 40 LEU 40 394 ? ? ? A . n A 1 41 LEU 41 395 ? ? ? A . n A 1 42 SER 42 396 ? ? ? A . n A 1 43 ALA 43 397 ? ? ? A . n A 1 44 THR 44 398 ? ? ? A . n A 1 45 LYS 45 399 ? ? ? A . n A 1 46 ARG 46 400 ? ? ? A . n A 1 47 TRP 47 401 ? ? ? A . n A 1 48 PHE 48 402 ? ? ? A . n A 1 49 VAL 49 403 ? ? ? A . n A 1 50 THR 50 404 ? ? ? A . n A 1 51 SER 51 405 ? ? ? A . n A 1 52 LYS 52 406 ? ? ? A . n A 1 53 PRO 53 407 ? ? ? A . n A 1 54 GLY 54 408 ? ? ? A . n A 1 55 ALA 55 409 ? ? ? A . n A 1 56 GLY 56 410 ? ? ? A . n A 1 57 ALA 57 411 ? ? ? A . n A 1 58 ASN 58 412 ? ? ? A . n A 1 59 ASN 59 413 ? ? ? A . n A 1 60 GLN 60 414 ? ? ? A . n A 1 61 ASN 61 415 ? ? ? A . n A 1 62 ALA 62 416 ? ? ? A . n A 1 63 VAL 63 417 ? ? ? A . n A 1 64 ILE 64 418 ? ? ? A . n A 1 65 TYR 65 419 ? ? ? A . n A 1 66 THR 66 420 ? ? ? A . n A 1 67 ASN 67 421 ? ? ? A . n A 1 68 GLU 68 422 ? ? ? A . n A 1 69 SER 69 423 ? ? ? A . n A 1 70 ALA 70 424 424 ALA ALA A . n A 1 71 GLU 71 425 425 GLU GLU A . n A 1 72 LEU 72 426 426 LEU LEU A . n A 1 73 GLN 73 427 427 GLN GLN A . n A 1 74 THR 74 428 428 THR THR A . n A 1 75 ARG 75 429 429 ARG ARG A . n A 1 76 LYS 76 430 430 LYS LYS A . n A 1 77 LEU 77 431 431 LEU LEU A . n A 1 78 GLY 78 432 432 GLY GLY A . n A 1 79 ASP 79 433 433 ASP ASP A . n A 1 80 LEU 80 434 434 LEU LEU A . n A 1 81 TYR 81 435 435 TYR TYR A . n A 1 82 PHE 82 436 436 PHE PHE A . n A 1 83 MET 83 437 437 MET MET A . n A 1 84 PHE 84 438 438 PHE PHE A . n A 1 85 GLY 85 439 439 GLY GLY A . n A 1 86 HIS 86 440 440 HIS HIS A . n A 1 87 TYR 87 441 441 TYR TYR A . n A 1 88 ASN 88 442 442 ASN ASN A . n A 1 89 LEU 89 443 443 LEU LEU A . n A 1 90 ALA 90 444 444 ALA ALA A . n A 1 91 PHE 91 445 445 PHE PHE A . n A 1 92 GLN 92 446 446 GLN GLN A . n A 1 93 SER 93 447 447 SER SER A . n A 1 94 TYR 94 448 448 TYR TYR A . n A 1 95 HIS 95 449 449 HIS HIS A . n A 1 96 GLN 96 450 450 GLN GLN A . n A 1 97 ALA 97 451 451 ALA ALA A . n A 1 98 LYS 98 452 452 LYS LYS A . n A 1 99 ARG 99 453 453 ARG ARG A . n A 1 100 ASP 100 454 454 ASP ASP A . n A 1 101 PHE 101 455 455 PHE PHE A . n A 1 102 ASN 102 456 456 ASN ASN A . n A 1 103 ALA 103 457 457 ALA ALA A . n A 1 104 ASP 104 458 458 ASP ASP A . n A 1 105 SER 105 459 459 SER SER A . n A 1 106 ALA 106 460 460 ALA ALA A . n A 1 107 TRP 107 461 461 TRP TRP A . n A 1 108 GLN 108 462 462 GLN GLN A . n A 1 109 TYR 109 463 463 TYR TYR A . n A 1 110 TYR 110 464 464 TYR TYR A . n A 1 111 ALA 111 465 465 ALA ALA A . n A 1 112 GLY 112 466 466 GLY GLY A . n A 1 113 ALA 113 467 467 ALA ALA A . n A 1 114 LEU 114 468 468 LEU LEU A . n A 1 115 GLU 115 469 469 GLU GLU A . n A 1 116 MET 116 470 470 MET MET A . n A 1 117 ALA 117 471 471 ALA ALA A . n A 1 118 ALA 118 472 472 ALA ALA A . n A 1 119 LEU 119 473 473 LEU LEU A . n A 1 120 SER 120 474 474 SER SER A . n A 1 121 ALA 121 475 475 ALA ALA A . n A 1 122 PHE 122 476 476 PHE PHE A . n A 1 123 MET 123 477 477 MET MET A . n A 1 124 LEU 124 478 478 LEU LEU A . n A 1 125 GLY 125 479 479 GLY GLY A . n A 1 126 THR 126 480 480 THR THR A . n A 1 127 ALA 127 481 481 ALA ALA A . n A 1 128 GLN 128 482 482 GLN GLN A . n A 1 129 ARG 129 483 483 ARG ARG A . n A 1 130 LYS 130 484 484 LYS LYS A . n A 1 131 THR 131 485 485 THR THR A . n A 1 132 TYR 132 486 486 TYR TYR A . n A 1 133 ASP 133 487 487 ASP ASP A . n A 1 134 TYR 134 488 488 TYR TYR A . n A 1 135 MET 135 489 489 MET MET A . n A 1 136 GLU 136 490 490 GLU GLU A . n A 1 137 ASP 137 491 491 ASP ASP A . n A 1 138 ALA 138 492 492 ALA ALA A . n A 1 139 ILE 139 493 493 ILE ILE A . n A 1 140 VAL 140 494 494 VAL VAL A . n A 1 141 CYS 141 495 495 CYS CYS A . n A 1 142 TYR 142 496 496 TYR TYR A . n A 1 143 LEU 143 497 497 LEU LEU A . n A 1 144 THR 144 498 498 THR THR A . n A 1 145 VAL 145 499 499 VAL VAL A . n A 1 146 CYS 146 500 500 CYS CYS A . n A 1 147 LYS 147 501 501 LYS LYS A . n A 1 148 LEU 148 502 502 LEU LEU A . n A 1 149 GLN 149 503 503 GLN GLN A . n A 1 150 GLN 150 504 504 GLN GLN A . n A 1 151 PHE 151 505 505 PHE PHE A . n A 1 152 ALA 152 506 506 ALA ALA A . n A 1 153 THR 153 507 507 THR THR A . n A 1 154 ARG 154 508 508 ARG ARG A . n A 1 155 ALA 155 509 509 ALA ALA A . n A 1 156 THR 156 510 510 THR THR A . n A 1 157 LEU 157 511 511 LEU LEU A . n A 1 158 LEU 158 512 512 LEU LEU A . n A 1 159 SER 159 513 513 SER SER A . n A 1 160 MET 160 514 514 MET MET A . n A 1 161 GLU 161 515 515 GLU GLU A . n A 1 162 CYS 162 516 516 CYS CYS A . n A 1 163 LEU 163 517 517 LEU LEU A . n A 1 164 LYS 164 518 518 LYS LYS A . n A 1 165 THR 165 519 519 THR THR A . n A 1 166 ALA 166 520 520 ALA ALA A . n A 1 167 ARG 167 521 521 ARG ARG A . n A 1 168 LEU 168 522 522 LEU LEU A . n A 1 169 TYR 169 523 523 TYR TYR A . n A 1 170 SER 170 524 524 SER SER A . n A 1 171 GLU 171 525 525 GLU GLU A . n A 1 172 VAL 172 526 526 VAL VAL A . n A 1 173 ALA 173 527 527 ALA ALA A . n A 1 174 LYS 174 528 528 LYS LYS A . n A 1 175 GLN 175 529 529 GLN GLN A . n A 1 176 LEU 176 530 530 LEU LEU A . n A 1 177 ILE 177 531 531 ILE ILE A . n A 1 178 ARG 178 532 532 ARG ARG A . n A 1 179 MET 179 533 533 MET MET A . n A 1 180 THR 180 534 534 THR THR A . n A 1 181 ASN 181 535 535 ASN ASN A . n A 1 182 GLU 182 536 536 GLU GLU A . n A 1 183 GLU 183 537 537 GLU GLU A . n A 1 184 SER 184 538 538 SER SER A . n A 1 185 ASP 185 539 539 ASP ASP A . n A 1 186 LEU 186 540 540 LEU LEU A . n A 1 187 ARG 187 541 541 ARG ARG A . n A 1 188 SER 188 542 542 SER SER A . n A 1 189 ALA 189 543 543 ALA ALA A . n A 1 190 LEU 190 544 544 LEU LEU A . n A 1 191 LEU 191 545 545 LEU LEU A . n A 1 192 LEU 192 546 546 LEU LEU A . n A 1 193 GLU 193 547 547 GLU GLU A . n A 1 194 GLN 194 548 548 GLN GLN A . n A 1 195 ALA 195 549 549 ALA ALA A . n A 1 196 ALA 196 550 550 ALA ALA A . n A 1 197 TYR 197 551 551 TYR TYR A . n A 1 198 CYS 198 552 552 CYS CYS A . n A 1 199 PHE 199 553 553 PHE PHE A . n A 1 200 LEU 200 554 554 LEU LEU A . n A 1 201 VAL 201 555 555 VAL VAL A . n A 1 202 THR 202 556 556 THR THR A . n A 1 203 GLN 203 557 557 GLN GLN A . n A 1 204 PRO 204 558 558 PRO PRO A . n A 1 205 PRO 205 559 559 PRO PRO A . n A 1 206 MET 206 560 560 MET MET A . n A 1 207 HIS 207 561 561 HIS HIS A . n A 1 208 ARG 208 562 562 ARG ARG A . n A 1 209 LYS 209 563 563 LYS LYS A . n A 1 210 TYR 210 564 564 TYR TYR A . n A 1 211 ALA 211 565 565 ALA ALA A . n A 1 212 PHE 212 566 566 PHE PHE A . n A 1 213 HIS 213 567 567 HIS HIS A . n A 1 214 ILE 214 568 568 ILE ILE A . n A 1 215 VAL 215 569 569 VAL VAL A . n A 1 216 LEU 216 570 570 LEU LEU A . n A 1 217 ALA 217 571 571 ALA ALA A . n A 1 218 GLY 218 572 572 GLY GLY A . n A 1 219 ASN 219 573 573 ASN ASN A . n A 1 220 ARG 220 574 574 ARG ARG A . n A 1 221 TYR 221 575 575 TYR TYR A . n A 1 222 SER 222 576 576 SER SER A . n A 1 223 ARG 223 577 577 ARG ARG A . n A 1 224 ALA 224 578 578 ALA ALA A . n A 1 225 GLY 225 579 579 GLY GLY A . n A 1 226 GLN 226 580 580 GLN GLN A . n A 1 227 ARG 227 581 581 ARG ARG A . n A 1 228 LYS 228 582 582 LYS LYS A . n A 1 229 HIS 229 583 583 HIS HIS A . n A 1 230 ALA 230 584 584 ALA ALA A . n A 1 231 TYR 231 585 585 TYR TYR A . n A 1 232 ARG 232 586 586 ARG ARG A . n A 1 233 CYS 233 587 587 CYS CYS A . n A 1 234 TYR 234 588 588 TYR TYR A . n A 1 235 ARG 235 589 589 ARG ARG A . n A 1 236 GLN 236 590 590 GLN GLN A . n A 1 237 ALA 237 591 591 ALA ALA A . n A 1 238 TYR 238 592 592 TYR TYR A . n A 1 239 GLN 239 593 593 GLN GLN A . n A 1 240 VAL 240 594 594 VAL VAL A . n A 1 241 PHE 241 595 595 PHE PHE A . n A 1 242 GLN 242 596 596 GLN GLN A . n A 1 243 LYS 243 597 597 LYS LYS A . n A 1 244 ARG 244 598 598 ARG ARG A . n A 1 245 GLU 245 599 599 GLU GLU A . n A 1 246 TRP 246 600 600 TRP TRP A . n A 1 247 SER 247 601 601 SER SER A . n A 1 248 LEU 248 602 602 LEU LEU A . n A 1 249 ALA 249 603 603 ALA ALA A . n A 1 250 GLU 250 604 604 GLU GLU A . n A 1 251 ASP 251 605 605 ASP ASP A . n A 1 252 HIS 252 606 606 HIS HIS A . n A 1 253 ILE 253 607 607 ILE ILE A . n A 1 254 GLN 254 608 608 GLN GLN A . n A 1 255 TYR 255 609 609 TYR TYR A . n A 1 256 THR 256 610 610 THR THR A . n A 1 257 VAL 257 611 611 VAL VAL A . n A 1 258 ALA 258 612 612 ALA ALA A . n A 1 259 LYS 259 613 613 LYS LYS A . n A 1 260 GLN 260 614 614 GLN GLN A . n A 1 261 ALA 261 615 615 ALA ALA A . n A 1 262 TYR 262 616 616 TYR TYR A . n A 1 263 MET 263 617 617 MET MET A . n A 1 264 LEU 264 618 618 LEU LEU A . n A 1 265 LYS 265 619 619 LYS LYS A . n A 1 266 GLN 266 620 620 GLN GLN A . n A 1 267 LEU 267 621 621 LEU LEU A . n A 1 268 GLU 268 622 622 GLU GLU A . n A 1 269 GLU 269 623 623 GLU GLU A . n A 1 270 ALA 270 624 624 ALA ALA A . n A 1 271 SER 271 625 625 SER SER A . n A 1 272 ARG 272 626 626 ARG ARG A . n A 1 273 SER 273 627 627 SER SER A . n A 1 274 PHE 274 628 628 PHE PHE A . n A 1 275 ALA 275 629 629 ALA ALA A . n A 1 276 HIS 276 630 630 HIS HIS A . n A 1 277 LEU 277 631 631 LEU LEU A . n A 1 278 LEU 278 632 632 LEU LEU A . n A 1 279 ARG 279 633 633 ARG ARG A . n A 1 280 PRO 280 634 634 PRO PRO A . n A 1 281 GLY 281 635 635 GLY GLY A . n A 1 282 SER 282 636 636 SER SER A . n A 1 283 LEU 283 637 637 LEU LEU A . n A 1 284 GLN 284 638 638 GLN GLN A . n A 1 285 SER 285 639 639 SER SER A . n A 1 286 ALA 286 640 640 ALA ALA A . n A 1 287 GLN 287 641 641 GLN GLN A . n A 1 288 GLN 288 642 642 GLN GLN A . n A 1 289 GLN 289 643 643 GLN GLN A . n A 1 290 THR 290 644 644 THR THR A . n A 1 291 SER 291 645 645 SER SER A . n A 1 292 PHE 292 646 646 PHE PHE A . n A 1 293 LEU 293 647 647 LEU LEU A . n A 1 294 LYS 294 648 648 LYS LYS A . n A 1 295 GLU 295 649 649 GLU GLU A . n A 1 296 TYR 296 650 650 TYR TYR A . n A 1 297 ILE 297 651 651 ILE ILE A . n A 1 298 GLN 298 652 652 GLN GLN A . n A 1 299 THR 299 653 653 THR THR A . n A 1 300 GLN 300 654 654 GLN GLN A . n A 1 301 ASN 301 655 655 ASN ASN A . n A 1 302 GLU 302 656 656 GLU GLU A . n A 1 303 LEU 303 657 657 LEU LEU A . n A 1 304 VAL 304 658 658 VAL VAL A . n A 1 305 LYS 305 659 659 LYS LYS A . n A 1 306 ARG 306 660 660 ARG ARG A . n A 1 307 SER 307 661 661 SER SER A . n # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7B6E _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B6E _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7B6E _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7B6E _struct.title 'Drosophila melanogaster TRAPP C8 subunits region 355 to 661' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7B6E _struct_keywords.text 'Golgi, GEFS, Rab1, TRAPP, EXOCYTOSIS' _struct_keywords.pdbx_keywords EXOCYTOSIS # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9VW22_DROME _struct_ref.pdbx_db_accession Q9VW22 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DNLRHFVQDYAVRALIPYIEHLVAILAEGVTNKKGVSKSLLSATKRWFVTSKPGAGANNQNAVIYTNESAELQTRKLGDL YFMFGHYNLAFQSYHQAKRDFNADSAWQYYAGALEMAALSAFMLGTAQRKTYDYMEDAIVCYLTVCKLQQFATRATLLSM ECLKTARLYSEVAKQLIRMTNEESDLRSALLLEQAAYCFLVTQPPMHRKYAFHIVLAGNRYSRAGQRKHAYRCYRQAYQV FQKREWSLAEDHIQYTVAKQAYMLKQLEEASRSFAHLLRPGSLQSAQQQTSFLKEYIQTQNELVKRS ; _struct_ref.pdbx_align_begin 355 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7B6E _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 307 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9VW22 _struct_ref_seq.db_align_beg 355 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 661 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 355 _struct_ref_seq.pdbx_auth_seq_align_end 661 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 16590 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 cross-linking ? 2 1 'gel filtration' ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 1 ? VAL A 30 ? ASP A 355 VAL A 384 1 ? 30 HELX_P HELX_P2 AA2 GLU A 71 ? PHE A 84 ? GLU A 425 PHE A 438 1 ? 14 HELX_P HELX_P3 AA3 ASN A 88 ? ASN A 102 ? ASN A 442 ASN A 456 1 ? 15 HELX_P HELX_P4 AA4 TRP A 107 ? MET A 123 ? TRP A 461 MET A 477 1 ? 17 HELX_P HELX_P5 AA5 ARG A 129 ? CYS A 146 ? ARG A 483 CYS A 500 1 ? 18 HELX_P HELX_P6 AA6 LEU A 148 ? THR A 165 ? LEU A 502 THR A 519 1 ? 18 HELX_P HELX_P7 AA7 TYR A 169 ? ASN A 181 ? TYR A 523 ASN A 535 1 ? 13 HELX_P HELX_P8 AA8 LEU A 186 ? GLN A 203 ? LEU A 540 GLN A 557 1 ? 18 HELX_P HELX_P9 AA9 HIS A 207 ? GLY A 225 ? HIS A 561 GLY A 579 1 ? 19 HELX_P HELX_P10 AB1 GLN A 226 ? ARG A 244 ? GLN A 580 ARG A 598 1 ? 19 HELX_P HELX_P11 AB2 TRP A 246 ? GLN A 260 ? TRP A 600 GLN A 614 1 ? 15 HELX_P HELX_P12 AB3 GLN A 266 ? LEU A 278 ? GLN A 620 LEU A 632 1 ? 13 HELX_P HELX_P13 AB4 SER A 285 ? SER A 307 ? SER A 639 SER A 661 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A ALA 471 ? ? OG A SER 474 ? ? 2.13 2 1 OE1 A GLN 482 ? ? NZ A LYS 484 ? ? 2.16 3 1 O A CYS 516 ? ? OG1 A THR 519 ? ? 2.18 4 1 O A GLU 382 ? ? OG1 A THR 385 ? ? 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CA A LEU 468 ? ? CB A LEU 468 ? ? CG A LEU 468 ? ? 130.26 115.30 14.96 2.30 N 2 1 CA A PRO 559 ? ? N A PRO 559 ? ? CD A PRO 559 ? ? 102.11 111.70 -9.59 1.40 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 477 ? ? -92.09 48.54 2 1 ALA A 481 ? ? 54.87 12.53 3 1 GLN A 482 ? ? 37.99 58.55 4 1 ARG A 521 ? ? 69.09 -6.75 5 1 LEU A 522 ? ? -92.33 51.31 6 1 GLU A 537 ? ? 77.93 -12.55 7 1 SER A 538 ? ? 179.64 -178.42 8 1 PRO A 559 ? ? -79.72 -164.44 9 1 TRP A 600 ? ? 43.50 72.91 10 1 LEU A 632 ? ? 58.71 75.31 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ARG _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 598 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLU _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 599 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -145.66 # _em_3d_fitting.entry_id 7B6E _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value 302.4 _em_3d_fitting.ref_protocol OTHER _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7B6E _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 353400 _em_3d_reconstruction.resolution 4.5 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details 'Partial model of the TRAPP C8 subunits from the TRAPP C8, C12 and C13 map. Part of the TRAPPIII complex' _em_entity_assembly.name 'TRAPPIII complex' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_imaging.id 1 _em_imaging.entry_id 7B6E _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 100 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification 75000 _em_imaging.cryogen NITROGEN _em_imaging.details '32% of the images were acquiring tilted the stage 19 degrees.' _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'TFS KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 4000 _em_imaging.nominal_defocus_min 2200 _em_imaging.nominal_magnification 75000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 400 _em_sample_support.grid_type Quantifoil _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 285.15 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK III' _em_vitrification.entry_id 7B6E _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7B6E _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7B6E _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 386 ? A ASN 32 2 1 Y 1 A LYS 387 ? A LYS 33 3 1 Y 1 A LYS 388 ? A LYS 34 4 1 Y 1 A GLY 389 ? A GLY 35 5 1 Y 1 A VAL 390 ? A VAL 36 6 1 Y 1 A SER 391 ? A SER 37 7 1 Y 1 A LYS 392 ? A LYS 38 8 1 Y 1 A SER 393 ? A SER 39 9 1 Y 1 A LEU 394 ? A LEU 40 10 1 Y 1 A LEU 395 ? A LEU 41 11 1 Y 1 A SER 396 ? A SER 42 12 1 Y 1 A ALA 397 ? A ALA 43 13 1 Y 1 A THR 398 ? A THR 44 14 1 Y 1 A LYS 399 ? A LYS 45 15 1 Y 1 A ARG 400 ? A ARG 46 16 1 Y 1 A TRP 401 ? A TRP 47 17 1 Y 1 A PHE 402 ? A PHE 48 18 1 Y 1 A VAL 403 ? A VAL 49 19 1 Y 1 A THR 404 ? A THR 50 20 1 Y 1 A SER 405 ? A SER 51 21 1 Y 1 A LYS 406 ? A LYS 52 22 1 Y 1 A PRO 407 ? A PRO 53 23 1 Y 1 A GLY 408 ? A GLY 54 24 1 Y 1 A ALA 409 ? A ALA 55 25 1 Y 1 A GLY 410 ? A GLY 56 26 1 Y 1 A ALA 411 ? A ALA 57 27 1 Y 1 A ASN 412 ? A ASN 58 28 1 Y 1 A ASN 413 ? A ASN 59 29 1 Y 1 A GLN 414 ? A GLN 60 30 1 Y 1 A ASN 415 ? A ASN 61 31 1 Y 1 A ALA 416 ? A ALA 62 32 1 Y 1 A VAL 417 ? A VAL 63 33 1 Y 1 A ILE 418 ? A ILE 64 34 1 Y 1 A TYR 419 ? A TYR 65 35 1 Y 1 A THR 420 ? A THR 66 36 1 Y 1 A ASN 421 ? A ASN 67 37 1 Y 1 A GLU 422 ? A GLU 68 38 1 Y 1 A SER 423 ? A SER 69 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 HIS N N N N 137 HIS CA C N S 138 HIS C C N N 139 HIS O O N N 140 HIS CB C N N 141 HIS CG C Y N 142 HIS ND1 N Y N 143 HIS CD2 C Y N 144 HIS CE1 C Y N 145 HIS NE2 N Y N 146 HIS OXT O N N 147 HIS H H N N 148 HIS H2 H N N 149 HIS HA H N N 150 HIS HB2 H N N 151 HIS HB3 H N N 152 HIS HD1 H N N 153 HIS HD2 H N N 154 HIS HE1 H N N 155 HIS HE2 H N N 156 HIS HXT H N N 157 ILE N N N N 158 ILE CA C N S 159 ILE C C N N 160 ILE O O N N 161 ILE CB C N S 162 ILE CG1 C N N 163 ILE CG2 C N N 164 ILE CD1 C N N 165 ILE OXT O N N 166 ILE H H N N 167 ILE H2 H N N 168 ILE HA H N N 169 ILE HB H N N 170 ILE HG12 H N N 171 ILE HG13 H N N 172 ILE HG21 H N N 173 ILE HG22 H N N 174 ILE HG23 H N N 175 ILE HD11 H N N 176 ILE HD12 H N N 177 ILE HD13 H N N 178 ILE HXT H N N 179 LEU N N N N 180 LEU CA C N S 181 LEU C C N N 182 LEU O O N N 183 LEU CB C N N 184 LEU CG C N N 185 LEU CD1 C N N 186 LEU CD2 C N N 187 LEU OXT O N N 188 LEU H H N N 189 LEU H2 H N N 190 LEU HA H N N 191 LEU HB2 H N N 192 LEU HB3 H N N 193 LEU HG H N N 194 LEU HD11 H N N 195 LEU HD12 H N N 196 LEU HD13 H N N 197 LEU HD21 H N N 198 LEU HD22 H N N 199 LEU HD23 H N N 200 LEU HXT H N N 201 LYS N N N N 202 LYS CA C N S 203 LYS C C N N 204 LYS O O N N 205 LYS CB C N N 206 LYS CG C N N 207 LYS CD C N N 208 LYS CE C N N 209 LYS NZ N N N 210 LYS OXT O N N 211 LYS H H N N 212 LYS H2 H N N 213 LYS HA H N N 214 LYS HB2 H N N 215 LYS HB3 H N N 216 LYS HG2 H N N 217 LYS HG3 H N N 218 LYS HD2 H N N 219 LYS HD3 H N N 220 LYS HE2 H N N 221 LYS HE3 H N N 222 LYS HZ1 H N N 223 LYS HZ2 H N N 224 LYS HZ3 H N N 225 LYS HXT H N N 226 MET N N N N 227 MET CA C N S 228 MET C C N N 229 MET O O N N 230 MET CB C N N 231 MET CG C N N 232 MET SD S N N 233 MET CE C N N 234 MET OXT O N N 235 MET H H N N 236 MET H2 H N N 237 MET HA H N N 238 MET HB2 H N N 239 MET HB3 H N N 240 MET HG2 H N N 241 MET HG3 H N N 242 MET HE1 H N N 243 MET HE2 H N N 244 MET HE3 H N N 245 MET HXT H N N 246 PHE N N N N 247 PHE CA C N S 248 PHE C C N N 249 PHE O O N N 250 PHE CB C N N 251 PHE CG C Y N 252 PHE CD1 C Y N 253 PHE CD2 C Y N 254 PHE CE1 C Y N 255 PHE CE2 C Y N 256 PHE CZ C Y N 257 PHE OXT O N N 258 PHE H H N N 259 PHE H2 H N N 260 PHE HA H N N 261 PHE HB2 H N N 262 PHE HB3 H N N 263 PHE HD1 H N N 264 PHE HD2 H N N 265 PHE HE1 H N N 266 PHE HE2 H N N 267 PHE HZ H N N 268 PHE HXT H N N 269 PRO N N N N 270 PRO CA C N S 271 PRO C C N N 272 PRO O O N N 273 PRO CB C N N 274 PRO CG C N N 275 PRO CD C N N 276 PRO OXT O N N 277 PRO H H N N 278 PRO HA H N N 279 PRO HB2 H N N 280 PRO HB3 H N N 281 PRO HG2 H N N 282 PRO HG3 H N N 283 PRO HD2 H N N 284 PRO HD3 H N N 285 PRO HXT H N N 286 SER N N N N 287 SER CA C N S 288 SER C C N N 289 SER O O N N 290 SER CB C N N 291 SER OG O N N 292 SER OXT O N N 293 SER H H N N 294 SER H2 H N N 295 SER HA H N N 296 SER HB2 H N N 297 SER HB3 H N N 298 SER HG H N N 299 SER HXT H N N 300 THR N N N N 301 THR CA C N S 302 THR C C N N 303 THR O O N N 304 THR CB C N R 305 THR OG1 O N N 306 THR CG2 C N N 307 THR OXT O N N 308 THR H H N N 309 THR H2 H N N 310 THR HA H N N 311 THR HB H N N 312 THR HG1 H N N 313 THR HG21 H N N 314 THR HG22 H N N 315 THR HG23 H N N 316 THR HXT H N N 317 TRP N N N N 318 TRP CA C N S 319 TRP C C N N 320 TRP O O N N 321 TRP CB C N N 322 TRP CG C Y N 323 TRP CD1 C Y N 324 TRP CD2 C Y N 325 TRP NE1 N Y N 326 TRP CE2 C Y N 327 TRP CE3 C Y N 328 TRP CZ2 C Y N 329 TRP CZ3 C Y N 330 TRP CH2 C Y N 331 TRP OXT O N N 332 TRP H H N N 333 TRP H2 H N N 334 TRP HA H N N 335 TRP HB2 H N N 336 TRP HB3 H N N 337 TRP HD1 H N N 338 TRP HE1 H N N 339 TRP HE3 H N N 340 TRP HZ2 H N N 341 TRP HZ3 H N N 342 TRP HH2 H N N 343 TRP HXT H N N 344 TYR N N N N 345 TYR CA C N S 346 TYR C C N N 347 TYR O O N N 348 TYR CB C N N 349 TYR CG C Y N 350 TYR CD1 C Y N 351 TYR CD2 C Y N 352 TYR CE1 C Y N 353 TYR CE2 C Y N 354 TYR CZ C Y N 355 TYR OH O N N 356 TYR OXT O N N 357 TYR H H N N 358 TYR H2 H N N 359 TYR HA H N N 360 TYR HB2 H N N 361 TYR HB3 H N N 362 TYR HD1 H N N 363 TYR HD2 H N N 364 TYR HE1 H N N 365 TYR HE2 H N N 366 TYR HH H N N 367 TYR HXT H N N 368 VAL N N N N 369 VAL CA C N S 370 VAL C C N N 371 VAL O O N N 372 VAL CB C N N 373 VAL CG1 C N N 374 VAL CG2 C N N 375 VAL OXT O N N 376 VAL H H N N 377 VAL H2 H N N 378 VAL HA H N N 379 VAL HB H N N 380 VAL HG11 H N N 381 VAL HG12 H N N 382 VAL HG13 H N N 383 VAL HG21 H N N 384 VAL HG22 H N N 385 VAL HG23 H N N 386 VAL HXT H N N 387 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 HIS N CA sing N N 129 HIS N H sing N N 130 HIS N H2 sing N N 131 HIS CA C sing N N 132 HIS CA CB sing N N 133 HIS CA HA sing N N 134 HIS C O doub N N 135 HIS C OXT sing N N 136 HIS CB CG sing N N 137 HIS CB HB2 sing N N 138 HIS CB HB3 sing N N 139 HIS CG ND1 sing Y N 140 HIS CG CD2 doub Y N 141 HIS ND1 CE1 doub Y N 142 HIS ND1 HD1 sing N N 143 HIS CD2 NE2 sing Y N 144 HIS CD2 HD2 sing N N 145 HIS CE1 NE2 sing Y N 146 HIS CE1 HE1 sing N N 147 HIS NE2 HE2 sing N N 148 HIS OXT HXT sing N N 149 ILE N CA sing N N 150 ILE N H sing N N 151 ILE N H2 sing N N 152 ILE CA C sing N N 153 ILE CA CB sing N N 154 ILE CA HA sing N N 155 ILE C O doub N N 156 ILE C OXT sing N N 157 ILE CB CG1 sing N N 158 ILE CB CG2 sing N N 159 ILE CB HB sing N N 160 ILE CG1 CD1 sing N N 161 ILE CG1 HG12 sing N N 162 ILE CG1 HG13 sing N N 163 ILE CG2 HG21 sing N N 164 ILE CG2 HG22 sing N N 165 ILE CG2 HG23 sing N N 166 ILE CD1 HD11 sing N N 167 ILE CD1 HD12 sing N N 168 ILE CD1 HD13 sing N N 169 ILE OXT HXT sing N N 170 LEU N CA sing N N 171 LEU N H sing N N 172 LEU N H2 sing N N 173 LEU CA C sing N N 174 LEU CA CB sing N N 175 LEU CA HA sing N N 176 LEU C O doub N N 177 LEU C OXT sing N N 178 LEU CB CG sing N N 179 LEU CB HB2 sing N N 180 LEU CB HB3 sing N N 181 LEU CG CD1 sing N N 182 LEU CG CD2 sing N N 183 LEU CG HG sing N N 184 LEU CD1 HD11 sing N N 185 LEU CD1 HD12 sing N N 186 LEU CD1 HD13 sing N N 187 LEU CD2 HD21 sing N N 188 LEU CD2 HD22 sing N N 189 LEU CD2 HD23 sing N N 190 LEU OXT HXT sing N N 191 LYS N CA sing N N 192 LYS N H sing N N 193 LYS N H2 sing N N 194 LYS CA C sing N N 195 LYS CA CB sing N N 196 LYS CA HA sing N N 197 LYS C O doub N N 198 LYS C OXT sing N N 199 LYS CB CG sing N N 200 LYS CB HB2 sing N N 201 LYS CB HB3 sing N N 202 LYS CG CD sing N N 203 LYS CG HG2 sing N N 204 LYS CG HG3 sing N N 205 LYS CD CE sing N N 206 LYS CD HD2 sing N N 207 LYS CD HD3 sing N N 208 LYS CE NZ sing N N 209 LYS CE HE2 sing N N 210 LYS CE HE3 sing N N 211 LYS NZ HZ1 sing N N 212 LYS NZ HZ2 sing N N 213 LYS NZ HZ3 sing N N 214 LYS OXT HXT sing N N 215 MET N CA sing N N 216 MET N H sing N N 217 MET N H2 sing N N 218 MET CA C sing N N 219 MET CA CB sing N N 220 MET CA HA sing N N 221 MET C O doub N N 222 MET C OXT sing N N 223 MET CB CG sing N N 224 MET CB HB2 sing N N 225 MET CB HB3 sing N N 226 MET CG SD sing N N 227 MET CG HG2 sing N N 228 MET CG HG3 sing N N 229 MET SD CE sing N N 230 MET CE HE1 sing N N 231 MET CE HE2 sing N N 232 MET CE HE3 sing N N 233 MET OXT HXT sing N N 234 PHE N CA sing N N 235 PHE N H sing N N 236 PHE N H2 sing N N 237 PHE CA C sing N N 238 PHE CA CB sing N N 239 PHE CA HA sing N N 240 PHE C O doub N N 241 PHE C OXT sing N N 242 PHE CB CG sing N N 243 PHE CB HB2 sing N N 244 PHE CB HB3 sing N N 245 PHE CG CD1 doub Y N 246 PHE CG CD2 sing Y N 247 PHE CD1 CE1 sing Y N 248 PHE CD1 HD1 sing N N 249 PHE CD2 CE2 doub Y N 250 PHE CD2 HD2 sing N N 251 PHE CE1 CZ doub Y N 252 PHE CE1 HE1 sing N N 253 PHE CE2 CZ sing Y N 254 PHE CE2 HE2 sing N N 255 PHE CZ HZ sing N N 256 PHE OXT HXT sing N N 257 PRO N CA sing N N 258 PRO N CD sing N N 259 PRO N H sing N N 260 PRO CA C sing N N 261 PRO CA CB sing N N 262 PRO CA HA sing N N 263 PRO C O doub N N 264 PRO C OXT sing N N 265 PRO CB CG sing N N 266 PRO CB HB2 sing N N 267 PRO CB HB3 sing N N 268 PRO CG CD sing N N 269 PRO CG HG2 sing N N 270 PRO CG HG3 sing N N 271 PRO CD HD2 sing N N 272 PRO CD HD3 sing N N 273 PRO OXT HXT sing N N 274 SER N CA sing N N 275 SER N H sing N N 276 SER N H2 sing N N 277 SER CA C sing N N 278 SER CA CB sing N N 279 SER CA HA sing N N 280 SER C O doub N N 281 SER C OXT sing N N 282 SER CB OG sing N N 283 SER CB HB2 sing N N 284 SER CB HB3 sing N N 285 SER OG HG sing N N 286 SER OXT HXT sing N N 287 THR N CA sing N N 288 THR N H sing N N 289 THR N H2 sing N N 290 THR CA C sing N N 291 THR CA CB sing N N 292 THR CA HA sing N N 293 THR C O doub N N 294 THR C OXT sing N N 295 THR CB OG1 sing N N 296 THR CB CG2 sing N N 297 THR CB HB sing N N 298 THR OG1 HG1 sing N N 299 THR CG2 HG21 sing N N 300 THR CG2 HG22 sing N N 301 THR CG2 HG23 sing N N 302 THR OXT HXT sing N N 303 TRP N CA sing N N 304 TRP N H sing N N 305 TRP N H2 sing N N 306 TRP CA C sing N N 307 TRP CA CB sing N N 308 TRP CA HA sing N N 309 TRP C O doub N N 310 TRP C OXT sing N N 311 TRP CB CG sing N N 312 TRP CB HB2 sing N N 313 TRP CB HB3 sing N N 314 TRP CG CD1 doub Y N 315 TRP CG CD2 sing Y N 316 TRP CD1 NE1 sing Y N 317 TRP CD1 HD1 sing N N 318 TRP CD2 CE2 doub Y N 319 TRP CD2 CE3 sing Y N 320 TRP NE1 CE2 sing Y N 321 TRP NE1 HE1 sing N N 322 TRP CE2 CZ2 sing Y N 323 TRP CE3 CZ3 doub Y N 324 TRP CE3 HE3 sing N N 325 TRP CZ2 CH2 doub Y N 326 TRP CZ2 HZ2 sing N N 327 TRP CZ3 CH2 sing Y N 328 TRP CZ3 HZ3 sing N N 329 TRP CH2 HH2 sing N N 330 TRP OXT HXT sing N N 331 TYR N CA sing N N 332 TYR N H sing N N 333 TYR N H2 sing N N 334 TYR CA C sing N N 335 TYR CA CB sing N N 336 TYR CA HA sing N N 337 TYR C O doub N N 338 TYR C OXT sing N N 339 TYR CB CG sing N N 340 TYR CB HB2 sing N N 341 TYR CB HB3 sing N N 342 TYR CG CD1 doub Y N 343 TYR CG CD2 sing Y N 344 TYR CD1 CE1 sing Y N 345 TYR CD1 HD1 sing N N 346 TYR CD2 CE2 doub Y N 347 TYR CD2 HD2 sing N N 348 TYR CE1 CZ doub Y N 349 TYR CE1 HE1 sing N N 350 TYR CE2 CZ sing Y N 351 TYR CE2 HE2 sing N N 352 TYR CZ OH sing N N 353 TYR OH HH sing N N 354 TYR OXT HXT sing N N 355 VAL N CA sing N N 356 VAL N H sing N N 357 VAL N H2 sing N N 358 VAL CA C sing N N 359 VAL CA CB sing N N 360 VAL CA HA sing N N 361 VAL C O doub N N 362 VAL C OXT sing N N 363 VAL CB CG1 sing N N 364 VAL CB CG2 sing N N 365 VAL CB HB sing N N 366 VAL CG1 HG11 sing N N 367 VAL CG1 HG12 sing N N 368 VAL CG1 HG13 sing N N 369 VAL CG2 HG21 sing N N 370 VAL CG2 HG22 sing N N 371 VAL CG2 HG23 sing N N 372 VAL OXT HXT sing N N 373 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 50 mM ? Hepes-KOH 1 2 250 mM ? KAc 1 3 1 mM ? DTT 1 4 0.005 '(v/v)%' ? 'Igepal C-630' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 7227 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Drosophila melanogaster' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 2449148 _em_entity_assembly_recombinant.organism 'Spodoptera aff. frugiperda 1 BOLD-2017' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 30 _em_image_recording.average_exposure_time 0.8 _em_image_recording.details '1190 from the whole dataset were collected with the stage tilted at 19 degrees' _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'FEI FALCON III (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 4 _em_image_recording.num_real_images 3671 # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 1601314 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? crYOLO 1.5 1 ? ? 2 'IMAGE ACQUISITION' ? EPU ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4.1 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' 1.15 ? 1 ? 8 'MODEL FITTING' ? Coot 9.03 ? 1 ? 9 OTHER ? ? ? ? ? ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? ? ? 1 ? ? 12 CLASSIFICATION ? RELION 3.1.1 1 ? ? 13 RECONSTRUCTION ? RELION 3.1.1 1 ? ? 14 'MODEL REFINEMENT' ? PHENIX ? ? 1 ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.05 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # _atom_sites.entry_id 7B6E _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_