data_7B6Y # _entry.id 7B6Y # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.353 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 7B6Y pdb_00007b6y 10.2210/pdb7b6y/pdb WWPDB D_1292112765 ? ? EMDB EMD-12058 ? ? # _pdbx_database_related.db_name EMDB _pdbx_database_related.details 'C8(355-600) from the MiniTRAPPIII complex' _pdbx_database_related.db_id EMD-12058 _pdbx_database_related.content_type 'associated EM volume' # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7B6Y _pdbx_database_status.recvd_initial_deposition_date 2020-12-08 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Galindo, A.' 1 0000-0002-1108-652X 'Munro, S.' 2 0000-0001-6160-5773 'Planelles-Herrero, V.J.' 3 0000-0002-1665-184X # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title ;Structural insights into the metazoan TRAPP complexes that activate Rab1 and Rab11. ; _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Galindo, A.' 1 0000-0002-1108-652X primary 'Munro, S.' 2 0000-0001-6160-5773 primary 'Planelles-Herrero, V.J.' 3 0000-0002-1665-184X primary 'Degliesposti, G.' 4 0000-0001-6387-2533 # _cell.angle_alpha 90.00 _cell.angle_alpha_esd ? _cell.angle_beta 90.00 _cell.angle_beta_esd ? _cell.angle_gamma 90.00 _cell.angle_gamma_esd ? _cell.entry_id 7B6Y _cell.details ? _cell.formula_units_Z ? _cell.length_a 1.00 _cell.length_a_esd ? _cell.length_b 1.00 _cell.length_b_esd ? _cell.length_c 1.00 _cell.length_c_esd ? _cell.volume ? _cell.volume_esd ? _cell.Z_PDB ? _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7B6Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description FI18195p1 _entity.formula_weight 28378.545 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Lethal (3) 76BDm,isoform A,isoform B' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;DNLRHFVQDYAVRALIPYIEHLVAILAEGVTNKKGVSKSLLSATKRWFVTSKPGAGANNQNAVIYTNESAELQTRKLGDL YFMFGHYNLAFQSYHQAKRDFNADSAWQYYAGALEMAALSAFMLGTAQRKTYDYMEDAIVCYLTVCKLQQFATRATLLSM ECLKTARLYSEVAKQLIRMTNEESDLRSALLLEQAAYCFLVTQPPMHRKYAFHIVLAGNRYSRAGQRKHAYRCYRQAYQV FQKREW ; _entity_poly.pdbx_seq_one_letter_code_can ;DNLRHFVQDYAVRALIPYIEHLVAILAEGVTNKKGVSKSLLSATKRWFVTSKPGAGANNQNAVIYTNESAELQTRKLGDL YFMFGHYNLAFQSYHQAKRDFNADSAWQYYAGALEMAALSAFMLGTAQRKTYDYMEDAIVCYLTVCKLQQFATRATLLSM ECLKTARLYSEVAKQLIRMTNEESDLRSALLLEQAAYCFLVTQPPMHRKYAFHIVLAGNRYSRAGQRKHAYRCYRQAYQV FQKREW ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASP n 1 2 ASN n 1 3 LEU n 1 4 ARG n 1 5 HIS n 1 6 PHE n 1 7 VAL n 1 8 GLN n 1 9 ASP n 1 10 TYR n 1 11 ALA n 1 12 VAL n 1 13 ARG n 1 14 ALA n 1 15 LEU n 1 16 ILE n 1 17 PRO n 1 18 TYR n 1 19 ILE n 1 20 GLU n 1 21 HIS n 1 22 LEU n 1 23 VAL n 1 24 ALA n 1 25 ILE n 1 26 LEU n 1 27 ALA n 1 28 GLU n 1 29 GLY n 1 30 VAL n 1 31 THR n 1 32 ASN n 1 33 LYS n 1 34 LYS n 1 35 GLY n 1 36 VAL n 1 37 SER n 1 38 LYS n 1 39 SER n 1 40 LEU n 1 41 LEU n 1 42 SER n 1 43 ALA n 1 44 THR n 1 45 LYS n 1 46 ARG n 1 47 TRP n 1 48 PHE n 1 49 VAL n 1 50 THR n 1 51 SER n 1 52 LYS n 1 53 PRO n 1 54 GLY n 1 55 ALA n 1 56 GLY n 1 57 ALA n 1 58 ASN n 1 59 ASN n 1 60 GLN n 1 61 ASN n 1 62 ALA n 1 63 VAL n 1 64 ILE n 1 65 TYR n 1 66 THR n 1 67 ASN n 1 68 GLU n 1 69 SER n 1 70 ALA n 1 71 GLU n 1 72 LEU n 1 73 GLN n 1 74 THR n 1 75 ARG n 1 76 LYS n 1 77 LEU n 1 78 GLY n 1 79 ASP n 1 80 LEU n 1 81 TYR n 1 82 PHE n 1 83 MET n 1 84 PHE n 1 85 GLY n 1 86 HIS n 1 87 TYR n 1 88 ASN n 1 89 LEU n 1 90 ALA n 1 91 PHE n 1 92 GLN n 1 93 SER n 1 94 TYR n 1 95 HIS n 1 96 GLN n 1 97 ALA n 1 98 LYS n 1 99 ARG n 1 100 ASP n 1 101 PHE n 1 102 ASN n 1 103 ALA n 1 104 ASP n 1 105 SER n 1 106 ALA n 1 107 TRP n 1 108 GLN n 1 109 TYR n 1 110 TYR n 1 111 ALA n 1 112 GLY n 1 113 ALA n 1 114 LEU n 1 115 GLU n 1 116 MET n 1 117 ALA n 1 118 ALA n 1 119 LEU n 1 120 SER n 1 121 ALA n 1 122 PHE n 1 123 MET n 1 124 LEU n 1 125 GLY n 1 126 THR n 1 127 ALA n 1 128 GLN n 1 129 ARG n 1 130 LYS n 1 131 THR n 1 132 TYR n 1 133 ASP n 1 134 TYR n 1 135 MET n 1 136 GLU n 1 137 ASP n 1 138 ALA n 1 139 ILE n 1 140 VAL n 1 141 CYS n 1 142 TYR n 1 143 LEU n 1 144 THR n 1 145 VAL n 1 146 CYS n 1 147 LYS n 1 148 LEU n 1 149 GLN n 1 150 GLN n 1 151 PHE n 1 152 ALA n 1 153 THR n 1 154 ARG n 1 155 ALA n 1 156 THR n 1 157 LEU n 1 158 LEU n 1 159 SER n 1 160 MET n 1 161 GLU n 1 162 CYS n 1 163 LEU n 1 164 LYS n 1 165 THR n 1 166 ALA n 1 167 ARG n 1 168 LEU n 1 169 TYR n 1 170 SER n 1 171 GLU n 1 172 VAL n 1 173 ALA n 1 174 LYS n 1 175 GLN n 1 176 LEU n 1 177 ILE n 1 178 ARG n 1 179 MET n 1 180 THR n 1 181 ASN n 1 182 GLU n 1 183 GLU n 1 184 SER n 1 185 ASP n 1 186 LEU n 1 187 ARG n 1 188 SER n 1 189 ALA n 1 190 LEU n 1 191 LEU n 1 192 LEU n 1 193 GLU n 1 194 GLN n 1 195 ALA n 1 196 ALA n 1 197 TYR n 1 198 CYS n 1 199 PHE n 1 200 LEU n 1 201 VAL n 1 202 THR n 1 203 GLN n 1 204 PRO n 1 205 PRO n 1 206 MET n 1 207 HIS n 1 208 ARG n 1 209 LYS n 1 210 TYR n 1 211 ALA n 1 212 PHE n 1 213 HIS n 1 214 ILE n 1 215 VAL n 1 216 LEU n 1 217 ALA n 1 218 GLY n 1 219 ASN n 1 220 ARG n 1 221 TYR n 1 222 SER n 1 223 ARG n 1 224 ALA n 1 225 GLY n 1 226 GLN n 1 227 ARG n 1 228 LYS n 1 229 HIS n 1 230 ALA n 1 231 TYR n 1 232 ARG n 1 233 CYS n 1 234 TYR n 1 235 ARG n 1 236 GLN n 1 237 ALA n 1 238 TYR n 1 239 GLN n 1 240 VAL n 1 241 PHE n 1 242 GLN n 1 243 LYS n 1 244 ARG n 1 245 GLU n 1 246 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type 'Biological sequence' _entity_src_gen.pdbx_beg_seq_num 1 _entity_src_gen.pdbx_end_seq_num 246 _entity_src_gen.gene_src_common_name 'Fruit fly' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'l(3)76BDm, Dmel\CG8793, l(3)76BDm-RA, l(3)L3809, TRAPPC8, CG8793, Dmel_CG8793' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera aff. frugiperda 1 BOLD-2017' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 2449148 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q9VW22_DROME _struct_ref.pdbx_db_accession Q9VW22 _struct_ref.pdbx_db_isoform ? _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DNLRHFVQDYAVRALIPYIEHLVAILAEGVTNKKGVSKSLLSATKRWFVTSKPGAGANNQNAVIYTNESAELQTRKLGDL YFMFGHYNLAFQSYHQAKRDFNADSAWQYYAGALEMAALSAFMLGTAQRKTYDYMEDAIVCYLTVCKLQQFATRATLLSM ECLKTARLYSEVAKQLIRMTNEESDLRSALLLEQAAYCFLVTQPPMHRKYAFHIVLAGNRYSRAGQRKHAYRCYRQAYQV FQKREW ; _struct_ref.pdbx_align_begin 355 # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 7B6Y _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 246 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9VW22 _struct_ref_seq.db_align_beg 355 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 600 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 355 _struct_ref_seq.pdbx_auth_seq_align_end 600 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7B6Y _exptl.crystals_number ? _exptl.details ? _exptl.method 'ELECTRON MICROSCOPY' _exptl.method_details ? # _struct.entry_id 7B6Y _struct.title 'C8(355-600) from the MiniTRAPPIII complex' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7B6Y _struct_keywords.text 'GEFs, Golgi, Rab1, TRAPPIII complex, EXOCYTOSIS' _struct_keywords.pdbx_keywords EXOCYTOSIS # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ASP A 1 ? THR A 31 ? ASP A 355 THR A 385 1 ? 31 HELX_P HELX_P2 AA2 GLU A 71 ? GLY A 85 ? GLU A 425 GLY A 439 1 ? 15 HELX_P HELX_P3 AA3 HIS A 86 ? ASN A 102 ? HIS A 440 ASN A 456 1 ? 17 HELX_P HELX_P4 AA4 ALA A 106 ? GLY A 125 ? ALA A 460 GLY A 479 1 ? 20 HELX_P HELX_P5 AA5 GLN A 128 ? CYS A 146 ? GLN A 482 CYS A 500 1 ? 19 HELX_P HELX_P6 AA6 LEU A 148 ? ALA A 166 ? LEU A 502 ALA A 520 1 ? 19 HELX_P HELX_P7 AA7 TYR A 169 ? ASN A 181 ? TYR A 523 ASN A 535 1 ? 13 HELX_P HELX_P8 AA8 ASP A 185 ? LEU A 200 ? ASP A 539 LEU A 554 1 ? 16 HELX_P HELX_P9 AA9 MET A 206 ? ALA A 224 ? MET A 560 ALA A 578 1 ? 19 HELX_P HELX_P10 AB1 GLN A 226 ? LYS A 243 ? GLN A 580 LYS A 597 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _atom_sites.entry_id 7B6Y _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASP 1 355 355 ASP ASP A . n A 1 2 ASN 2 356 356 ASN ASN A . n A 1 3 LEU 3 357 357 LEU LEU A . n A 1 4 ARG 4 358 358 ARG ARG A . n A 1 5 HIS 5 359 359 HIS HIS A . n A 1 6 PHE 6 360 360 PHE PHE A . n A 1 7 VAL 7 361 361 VAL VAL A . n A 1 8 GLN 8 362 362 GLN GLN A . n A 1 9 ASP 9 363 363 ASP ASP A . n A 1 10 TYR 10 364 364 TYR TYR A . n A 1 11 ALA 11 365 365 ALA ALA A . n A 1 12 VAL 12 366 366 VAL VAL A . n A 1 13 ARG 13 367 367 ARG ARG A . n A 1 14 ALA 14 368 368 ALA ALA A . n A 1 15 LEU 15 369 369 LEU LEU A . n A 1 16 ILE 16 370 370 ILE ILE A . n A 1 17 PRO 17 371 371 PRO PRO A . n A 1 18 TYR 18 372 372 TYR TYR A . n A 1 19 ILE 19 373 373 ILE ILE A . n A 1 20 GLU 20 374 374 GLU GLU A . n A 1 21 HIS 21 375 375 HIS HIS A . n A 1 22 LEU 22 376 376 LEU LEU A . n A 1 23 VAL 23 377 377 VAL VAL A . n A 1 24 ALA 24 378 378 ALA ALA A . n A 1 25 ILE 25 379 379 ILE ILE A . n A 1 26 LEU 26 380 380 LEU LEU A . n A 1 27 ALA 27 381 381 ALA ALA A . n A 1 28 GLU 28 382 382 GLU GLU A . n A 1 29 GLY 29 383 383 GLY GLY A . n A 1 30 VAL 30 384 384 VAL VAL A . n A 1 31 THR 31 385 385 THR THR A . n A 1 32 ASN 32 386 ? ? ? A . n A 1 33 LYS 33 387 ? ? ? A . n A 1 34 LYS 34 388 ? ? ? A . n A 1 35 GLY 35 389 ? ? ? A . n A 1 36 VAL 36 390 ? ? ? A . n A 1 37 SER 37 391 ? ? ? A . n A 1 38 LYS 38 392 ? ? ? A . n A 1 39 SER 39 393 ? ? ? A . n A 1 40 LEU 40 394 ? ? ? A . n A 1 41 LEU 41 395 ? ? ? A . n A 1 42 SER 42 396 ? ? ? A . n A 1 43 ALA 43 397 ? ? ? A . n A 1 44 THR 44 398 ? ? ? A . n A 1 45 LYS 45 399 ? ? ? A . n A 1 46 ARG 46 400 ? ? ? A . n A 1 47 TRP 47 401 ? ? ? A . n A 1 48 PHE 48 402 ? ? ? A . n A 1 49 VAL 49 403 ? ? ? A . n A 1 50 THR 50 404 ? ? ? A . n A 1 51 SER 51 405 ? ? ? A . n A 1 52 LYS 52 406 ? ? ? A . n A 1 53 PRO 53 407 ? ? ? A . n A 1 54 GLY 54 408 ? ? ? A . n A 1 55 ALA 55 409 ? ? ? A . n A 1 56 GLY 56 410 ? ? ? A . n A 1 57 ALA 57 411 ? ? ? A . n A 1 58 ASN 58 412 ? ? ? A . n A 1 59 ASN 59 413 ? ? ? A . n A 1 60 GLN 60 414 ? ? ? A . n A 1 61 ASN 61 415 ? ? ? A . n A 1 62 ALA 62 416 ? ? ? A . n A 1 63 VAL 63 417 ? ? ? A . n A 1 64 ILE 64 418 ? ? ? A . n A 1 65 TYR 65 419 ? ? ? A . n A 1 66 THR 66 420 ? ? ? A . n A 1 67 ASN 67 421 ? ? ? A . n A 1 68 GLU 68 422 ? ? ? A . n A 1 69 SER 69 423 ? ? ? A . n A 1 70 ALA 70 424 424 ALA ALA A . n A 1 71 GLU 71 425 425 GLU GLU A . n A 1 72 LEU 72 426 426 LEU LEU A . n A 1 73 GLN 73 427 427 GLN GLN A . n A 1 74 THR 74 428 428 THR THR A . n A 1 75 ARG 75 429 429 ARG ARG A . n A 1 76 LYS 76 430 430 LYS LYS A . n A 1 77 LEU 77 431 431 LEU LEU A . n A 1 78 GLY 78 432 432 GLY GLY A . n A 1 79 ASP 79 433 433 ASP ASP A . n A 1 80 LEU 80 434 434 LEU LEU A . n A 1 81 TYR 81 435 435 TYR TYR A . n A 1 82 PHE 82 436 436 PHE PHE A . n A 1 83 MET 83 437 437 MET MET A . n A 1 84 PHE 84 438 438 PHE PHE A . n A 1 85 GLY 85 439 439 GLY GLY A . n A 1 86 HIS 86 440 440 HIS HIS A . n A 1 87 TYR 87 441 441 TYR TYR A . n A 1 88 ASN 88 442 442 ASN ASN A . n A 1 89 LEU 89 443 443 LEU LEU A . n A 1 90 ALA 90 444 444 ALA ALA A . n A 1 91 PHE 91 445 445 PHE PHE A . n A 1 92 GLN 92 446 446 GLN GLN A . n A 1 93 SER 93 447 447 SER SER A . n A 1 94 TYR 94 448 448 TYR TYR A . n A 1 95 HIS 95 449 449 HIS HIS A . n A 1 96 GLN 96 450 450 GLN GLN A . n A 1 97 ALA 97 451 451 ALA ALA A . n A 1 98 LYS 98 452 452 LYS LYS A . n A 1 99 ARG 99 453 453 ARG ARG A . n A 1 100 ASP 100 454 454 ASP ASP A . n A 1 101 PHE 101 455 455 PHE PHE A . n A 1 102 ASN 102 456 456 ASN ASN A . n A 1 103 ALA 103 457 457 ALA ALA A . n A 1 104 ASP 104 458 458 ASP ASP A . n A 1 105 SER 105 459 459 SER SER A . n A 1 106 ALA 106 460 460 ALA ALA A . n A 1 107 TRP 107 461 461 TRP TRP A . n A 1 108 GLN 108 462 462 GLN GLN A . n A 1 109 TYR 109 463 463 TYR TYR A . n A 1 110 TYR 110 464 464 TYR TYR A . n A 1 111 ALA 111 465 465 ALA ALA A . n A 1 112 GLY 112 466 466 GLY GLY A . n A 1 113 ALA 113 467 467 ALA ALA A . n A 1 114 LEU 114 468 468 LEU LEU A . n A 1 115 GLU 115 469 469 GLU GLU A . n A 1 116 MET 116 470 470 MET MET A . n A 1 117 ALA 117 471 471 ALA ALA A . n A 1 118 ALA 118 472 472 ALA ALA A . n A 1 119 LEU 119 473 473 LEU LEU A . n A 1 120 SER 120 474 474 SER SER A . n A 1 121 ALA 121 475 475 ALA ALA A . n A 1 122 PHE 122 476 476 PHE PHE A . n A 1 123 MET 123 477 477 MET MET A . n A 1 124 LEU 124 478 478 LEU LEU A . n A 1 125 GLY 125 479 479 GLY GLY A . n A 1 126 THR 126 480 480 THR THR A . n A 1 127 ALA 127 481 481 ALA ALA A . n A 1 128 GLN 128 482 482 GLN GLN A . n A 1 129 ARG 129 483 483 ARG ARG A . n A 1 130 LYS 130 484 484 LYS LYS A . n A 1 131 THR 131 485 485 THR THR A . n A 1 132 TYR 132 486 486 TYR TYR A . n A 1 133 ASP 133 487 487 ASP ASP A . n A 1 134 TYR 134 488 488 TYR TYR A . n A 1 135 MET 135 489 489 MET MET A . n A 1 136 GLU 136 490 490 GLU GLU A . n A 1 137 ASP 137 491 491 ASP ASP A . n A 1 138 ALA 138 492 492 ALA ALA A . n A 1 139 ILE 139 493 493 ILE ILE A . n A 1 140 VAL 140 494 494 VAL VAL A . n A 1 141 CYS 141 495 495 CYS CYS A . n A 1 142 TYR 142 496 496 TYR TYR A . n A 1 143 LEU 143 497 497 LEU LEU A . n A 1 144 THR 144 498 498 THR THR A . n A 1 145 VAL 145 499 499 VAL VAL A . n A 1 146 CYS 146 500 500 CYS CYS A . n A 1 147 LYS 147 501 501 LYS LYS A . n A 1 148 LEU 148 502 502 LEU LEU A . n A 1 149 GLN 149 503 503 GLN GLN A . n A 1 150 GLN 150 504 504 GLN GLN A . n A 1 151 PHE 151 505 505 PHE PHE A . n A 1 152 ALA 152 506 506 ALA ALA A . n A 1 153 THR 153 507 507 THR THR A . n A 1 154 ARG 154 508 508 ARG ARG A . n A 1 155 ALA 155 509 509 ALA ALA A . n A 1 156 THR 156 510 510 THR THR A . n A 1 157 LEU 157 511 511 LEU LEU A . n A 1 158 LEU 158 512 512 LEU LEU A . n A 1 159 SER 159 513 513 SER SER A . n A 1 160 MET 160 514 514 MET MET A . n A 1 161 GLU 161 515 515 GLU GLU A . n A 1 162 CYS 162 516 516 CYS CYS A . n A 1 163 LEU 163 517 517 LEU LEU A . n A 1 164 LYS 164 518 518 LYS LYS A . n A 1 165 THR 165 519 519 THR THR A . n A 1 166 ALA 166 520 520 ALA ALA A . n A 1 167 ARG 167 521 521 ARG ARG A . n A 1 168 LEU 168 522 522 LEU LEU A . n A 1 169 TYR 169 523 523 TYR TYR A . n A 1 170 SER 170 524 524 SER SER A . n A 1 171 GLU 171 525 525 GLU GLU A . n A 1 172 VAL 172 526 526 VAL VAL A . n A 1 173 ALA 173 527 527 ALA ALA A . n A 1 174 LYS 174 528 528 LYS LYS A . n A 1 175 GLN 175 529 529 GLN GLN A . n A 1 176 LEU 176 530 530 LEU LEU A . n A 1 177 ILE 177 531 531 ILE ILE A . n A 1 178 ARG 178 532 532 ARG ARG A . n A 1 179 MET 179 533 533 MET MET A . n A 1 180 THR 180 534 534 THR THR A . n A 1 181 ASN 181 535 535 ASN ASN A . n A 1 182 GLU 182 536 536 GLU GLU A . n A 1 183 GLU 183 537 537 GLU GLU A . n A 1 184 SER 184 538 538 SER SER A . n A 1 185 ASP 185 539 539 ASP ASP A . n A 1 186 LEU 186 540 540 LEU LEU A . n A 1 187 ARG 187 541 541 ARG ARG A . n A 1 188 SER 188 542 542 SER SER A . n A 1 189 ALA 189 543 543 ALA ALA A . n A 1 190 LEU 190 544 544 LEU LEU A . n A 1 191 LEU 191 545 545 LEU LEU A . n A 1 192 LEU 192 546 546 LEU LEU A . n A 1 193 GLU 193 547 547 GLU GLU A . n A 1 194 GLN 194 548 548 GLN GLN A . n A 1 195 ALA 195 549 549 ALA ALA A . n A 1 196 ALA 196 550 550 ALA ALA A . n A 1 197 TYR 197 551 551 TYR TYR A . n A 1 198 CYS 198 552 552 CYS CYS A . n A 1 199 PHE 199 553 553 PHE PHE A . n A 1 200 LEU 200 554 554 LEU LEU A . n A 1 201 VAL 201 555 555 VAL VAL A . n A 1 202 THR 202 556 556 THR THR A . n A 1 203 GLN 203 557 557 GLN GLN A . n A 1 204 PRO 204 558 558 PRO PRO A . n A 1 205 PRO 205 559 559 PRO PRO A . n A 1 206 MET 206 560 560 MET MET A . n A 1 207 HIS 207 561 561 HIS HIS A . n A 1 208 ARG 208 562 562 ARG ARG A . n A 1 209 LYS 209 563 563 LYS LYS A . n A 1 210 TYR 210 564 564 TYR TYR A . n A 1 211 ALA 211 565 565 ALA ALA A . n A 1 212 PHE 212 566 566 PHE PHE A . n A 1 213 HIS 213 567 567 HIS HIS A . n A 1 214 ILE 214 568 568 ILE ILE A . n A 1 215 VAL 215 569 569 VAL VAL A . n A 1 216 LEU 216 570 570 LEU LEU A . n A 1 217 ALA 217 571 571 ALA ALA A . n A 1 218 GLY 218 572 572 GLY GLY A . n A 1 219 ASN 219 573 573 ASN ASN A . n A 1 220 ARG 220 574 574 ARG ARG A . n A 1 221 TYR 221 575 575 TYR TYR A . n A 1 222 SER 222 576 576 SER SER A . n A 1 223 ARG 223 577 577 ARG ARG A . n A 1 224 ALA 224 578 578 ALA ALA A . n A 1 225 GLY 225 579 579 GLY GLY A . n A 1 226 GLN 226 580 580 GLN GLN A . n A 1 227 ARG 227 581 581 ARG ARG A . n A 1 228 LYS 228 582 582 LYS LYS A . n A 1 229 HIS 229 583 583 HIS HIS A . n A 1 230 ALA 230 584 584 ALA ALA A . n A 1 231 TYR 231 585 585 TYR TYR A . n A 1 232 ARG 232 586 586 ARG ARG A . n A 1 233 CYS 233 587 587 CYS CYS A . n A 1 234 TYR 234 588 588 TYR TYR A . n A 1 235 ARG 235 589 589 ARG ARG A . n A 1 236 GLN 236 590 590 GLN GLN A . n A 1 237 ALA 237 591 591 ALA ALA A . n A 1 238 TYR 238 592 592 TYR TYR A . n A 1 239 GLN 239 593 593 GLN GLN A . n A 1 240 VAL 240 594 594 VAL VAL A . n A 1 241 PHE 241 595 595 PHE PHE A . n A 1 242 GLN 242 596 596 GLN GLN A . n A 1 243 LYS 243 597 597 LYS LYS A . n A 1 244 ARG 244 598 598 ARG ARG A . n A 1 245 GLU 245 599 599 GLU GLU A . n A 1 246 TRP 246 600 600 TRP TRP A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 0 ? 1 MORE 0 ? 1 'SSA (A^2)' 13560 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2022-01-12 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # _em_3d_fitting.entry_id 7B6Y _em_3d_fitting.id 1 _em_3d_fitting.details ? _em_3d_fitting.overall_b_value ? _em_3d_fitting.ref_protocol 'BACKBONE TRACE' _em_3d_fitting.ref_space REAL _em_3d_fitting.target_criteria ? _em_3d_fitting.method ? # _em_3d_reconstruction.entry_id 7B6Y _em_3d_reconstruction.id 1 _em_3d_reconstruction.algorithm ? _em_3d_reconstruction.details ? _em_3d_reconstruction.refinement_type ? _em_3d_reconstruction.image_processing_id 1 _em_3d_reconstruction.num_class_averages ? _em_3d_reconstruction.num_particles 486758 _em_3d_reconstruction.resolution 5.7 _em_3d_reconstruction.resolution_method 'FSC 0.143 CUT-OFF' _em_3d_reconstruction.symmetry_type POINT _em_3d_reconstruction.method ? _em_3d_reconstruction.nominal_pixel_size ? _em_3d_reconstruction.actual_pixel_size ? _em_3d_reconstruction.magnification_calibration ? # _em_buffer.id 1 _em_buffer.details ? _em_buffer.pH 7.4 _em_buffer.specimen_id 1 _em_buffer.name ? # _em_entity_assembly.id 1 _em_entity_assembly.parent_id 0 _em_entity_assembly.details ? _em_entity_assembly.name 'TRAPP C8 complex from the Mini TRAPPIII complex.' _em_entity_assembly.source RECOMBINANT _em_entity_assembly.type COMPLEX _em_entity_assembly.entity_id_list 1 _em_entity_assembly.synonym ? _em_entity_assembly.oligomeric_details ? # _em_image_scans.entry_id 7B6Y _em_image_scans.id 1 _em_image_scans.dimension_height ? _em_image_scans.dimension_width ? _em_image_scans.frames_per_image 40 _em_image_scans.image_recording_id 1 _em_image_scans.sampling_size ? _em_image_scans.scanner_model ? _em_image_scans.used_frames_per_image ? _em_image_scans.citation_id ? _em_image_scans.number_digital_images ? _em_image_scans.od_range ? _em_image_scans.quant_bit_size ? _em_image_scans.details ? # _em_imaging.id 1 _em_imaging.entry_id 7B6Y _em_imaging.accelerating_voltage 300 _em_imaging.alignment_procedure 'COMA FREE' _em_imaging.c2_aperture_diameter 100 _em_imaging.calibrated_defocus_max ? _em_imaging.calibrated_defocus_min ? _em_imaging.calibrated_magnification ? _em_imaging.cryogen NITROGEN _em_imaging.details ? _em_imaging.electron_source 'FIELD EMISSION GUN' _em_imaging.illumination_mode 'FLOOD BEAM' _em_imaging.microscope_model 'FEI TITAN KRIOS' _em_imaging.mode 'BRIGHT FIELD' _em_imaging.nominal_cs 2.7 _em_imaging.nominal_defocus_max 2.5 _em_imaging.nominal_defocus_min 1.5 _em_imaging.nominal_magnification 105000 _em_imaging.recording_temperature_maximum ? _em_imaging.recording_temperature_minimum ? _em_imaging.residual_tilt ? _em_imaging.specimen_holder_model 'FEI TITAN KRIOS AUTOGRID HOLDER' _em_imaging.specimen_id 1 _em_imaging.citation_id ? _em_imaging.date ? _em_imaging.temperature ? _em_imaging.tilt_angle_min ? _em_imaging.tilt_angle_max ? _em_imaging.astigmatism ? _em_imaging.detector_distance ? _em_imaging.electron_beam_tilt_params ? _em_imaging.specimen_holder_type ? # _em_sample_support.id 1 _em_sample_support.specimen_id 1 _em_sample_support.details ? _em_sample_support.grid_material COPPER _em_sample_support.grid_mesh_size 400 _em_sample_support.grid_type Quantifoil _em_sample_support.method ? _em_sample_support.film_material ? # _em_vitrification.id 1 _em_vitrification.specimen_id 1 _em_vitrification.chamber_temperature 285.15 _em_vitrification.cryogen_name ETHANE _em_vitrification.details ? _em_vitrification.humidity 100 _em_vitrification.instrument 'FEI VITROBOT MARK III' _em_vitrification.entry_id 7B6Y _em_vitrification.citation_id ? _em_vitrification.method ? _em_vitrification.temp ? _em_vitrification.time_resolved_state ? # _em_experiment.entry_id 7B6Y _em_experiment.id 1 _em_experiment.aggregation_state PARTICLE _em_experiment.reconstruction_method 'SINGLE PARTICLE' _em_experiment.entity_assembly_id 1 # _em_single_particle_entity.entry_id 7B6Y _em_single_particle_entity.id 1 _em_single_particle_entity.image_processing_id 1 _em_single_particle_entity.point_symmetry C1 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A LEU 530 ? ? OG1 A THR 534 ? ? 1.99 2 1 NH2 A ARG 521 ? ? OG1 A THR 556 ? ? 2.18 3 1 O A PHE 445 ? ? ND1 A HIS 449 ? ? 2.18 4 1 O A TYR 488 ? ? N A ALA 492 ? ? 2.19 5 1 O A THR 510 ? ? OG A SER 513 ? ? 2.19 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 501 ? ? -90.76 56.60 2 1 GLU A 537 ? ? 73.17 -9.57 3 1 HIS A 561 ? ? -56.03 -4.49 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 TYR A 435 ? ? PHE A 436 ? ? 149.33 2 1 PRO A 558 ? ? PRO A 559 ? ? -140.44 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 386 ? A ASN 32 2 1 Y 1 A LYS 387 ? A LYS 33 3 1 Y 1 A LYS 388 ? A LYS 34 4 1 Y 1 A GLY 389 ? A GLY 35 5 1 Y 1 A VAL 390 ? A VAL 36 6 1 Y 1 A SER 391 ? A SER 37 7 1 Y 1 A LYS 392 ? A LYS 38 8 1 Y 1 A SER 393 ? A SER 39 9 1 Y 1 A LEU 394 ? A LEU 40 10 1 Y 1 A LEU 395 ? A LEU 41 11 1 Y 1 A SER 396 ? A SER 42 12 1 Y 1 A ALA 397 ? A ALA 43 13 1 Y 1 A THR 398 ? A THR 44 14 1 Y 1 A LYS 399 ? A LYS 45 15 1 Y 1 A ARG 400 ? A ARG 46 16 1 Y 1 A TRP 401 ? A TRP 47 17 1 Y 1 A PHE 402 ? A PHE 48 18 1 Y 1 A VAL 403 ? A VAL 49 19 1 Y 1 A THR 404 ? A THR 50 20 1 Y 1 A SER 405 ? A SER 51 21 1 Y 1 A LYS 406 ? A LYS 52 22 1 Y 1 A PRO 407 ? A PRO 53 23 1 Y 1 A GLY 408 ? A GLY 54 24 1 Y 1 A ALA 409 ? A ALA 55 25 1 Y 1 A GLY 410 ? A GLY 56 26 1 Y 1 A ALA 411 ? A ALA 57 27 1 Y 1 A ASN 412 ? A ASN 58 28 1 Y 1 A ASN 413 ? A ASN 59 29 1 Y 1 A GLN 414 ? A GLN 60 30 1 Y 1 A ASN 415 ? A ASN 61 31 1 Y 1 A ALA 416 ? A ALA 62 32 1 Y 1 A VAL 417 ? A VAL 63 33 1 Y 1 A ILE 418 ? A ILE 64 34 1 Y 1 A TYR 419 ? A TYR 65 35 1 Y 1 A THR 420 ? A THR 66 36 1 Y 1 A ASN 421 ? A ASN 67 37 1 Y 1 A GLU 422 ? A GLU 68 38 1 Y 1 A SER 423 ? A SER 69 # loop_ _em_buffer_component.buffer_id _em_buffer_component.id _em_buffer_component.concentration _em_buffer_component.concentration_units _em_buffer_component.formula _em_buffer_component.name 1 1 50 mM ? Hepes-KOH 1 2 250 mM ? KAc 1 3 1 mM ? DTT 1 4 0.005 '(v/v)' ? 'Igepal C-630' # _em_ctf_correction.id 1 _em_ctf_correction.em_image_processing_id 1 _em_ctf_correction.type 'PHASE FLIPPING AND AMPLITUDE CORRECTION' _em_ctf_correction.details ? # _em_entity_assembly_molwt.entity_assembly_id 1 _em_entity_assembly_molwt.id 1 _em_entity_assembly_molwt.experimental_flag NO _em_entity_assembly_molwt.units ? _em_entity_assembly_molwt.value ? # _em_entity_assembly_naturalsource.id 2 _em_entity_assembly_naturalsource.entity_assembly_id 1 _em_entity_assembly_naturalsource.cell ? _em_entity_assembly_naturalsource.cellular_location ? _em_entity_assembly_naturalsource.ncbi_tax_id 7227 _em_entity_assembly_naturalsource.organ ? _em_entity_assembly_naturalsource.organelle ? _em_entity_assembly_naturalsource.organism 'Drosophila melanogaster' _em_entity_assembly_naturalsource.strain ? _em_entity_assembly_naturalsource.tissue ? # _em_entity_assembly_recombinant.id 2 _em_entity_assembly_recombinant.entity_assembly_id 1 _em_entity_assembly_recombinant.cell ? _em_entity_assembly_recombinant.ncbi_tax_id 2449148 _em_entity_assembly_recombinant.organism 'Spodoptera aff. frugiperda 1 BOLD-2017' _em_entity_assembly_recombinant.plasmid ? _em_entity_assembly_recombinant.strain ? # _em_image_processing.id 1 _em_image_processing.image_recording_id 1 _em_image_processing.details ? # _em_image_recording.id 1 _em_image_recording.imaging_id 1 _em_image_recording.avg_electron_dose_per_image 45.6 _em_image_recording.average_exposure_time 12 _em_image_recording.details ? _em_image_recording.detector_mode COUNTING _em_image_recording.film_or_detector_model 'GATAN K2 QUANTUM (4k x 4k)' _em_image_recording.num_diffraction_images ? _em_image_recording.num_grids_imaged 1 _em_image_recording.num_real_images 3443 # _em_particle_selection.id 1 _em_particle_selection.image_processing_id 1 _em_particle_selection.details ? _em_particle_selection.method ? _em_particle_selection.num_particles_selected 1242082 _em_particle_selection.reference_model ? # loop_ _em_software.id _em_software.category _em_software.details _em_software.name _em_software.version _em_software.image_processing_id _em_software.fitting_id _em_software.imaging_id 1 'PARTICLE SELECTION' ? crYOLO 1.5 1 ? ? 2 'IMAGE ACQUISITION' ? EPU ? ? ? 1 3 MASKING ? ? ? ? ? ? 4 'CTF CORRECTION' ? CTFFIND 4.1 1 ? ? 5 'LAYERLINE INDEXING' ? ? ? ? ? ? 6 'DIFFRACTION INDEXING' ? ? ? ? ? ? 7 'MODEL FITTING' ? 'UCSF Chimera' 1.5 ? 1 ? 8 OTHER ? ? ? ? ? ? 9 'MODEL REFINEMENT' ? Coot 0.9 ? 1 ? 10 'INITIAL EULER ASSIGNMENT' ? ? ? 1 ? ? 11 'FINAL EULER ASSIGNMENT' ? RELION 3.1.1 1 ? ? 12 CLASSIFICATION ? RELION 3.1.1 1 ? ? 13 RECONSTRUCTION ? RELION 3.1.1 1 ? ? # _em_specimen.id 1 _em_specimen.experiment_id 1 _em_specimen.concentration 0.5 _em_specimen.details ? _em_specimen.embedding_applied NO _em_specimen.shadowing_applied NO _em_specimen.staining_applied NO _em_specimen.vitrification_applied YES # loop_ _pdbx_struct_assembly_auth_evidence.id _pdbx_struct_assembly_auth_evidence.assembly_id _pdbx_struct_assembly_auth_evidence.experimental_support _pdbx_struct_assembly_auth_evidence.details 1 1 cross-linking ? 2 1 'gel filtration' ? #