HEADER HYDROLASE 12-DEC-20 7B7Z TITLE DEAMPYLATION COMPLEX OF MONOMERIC FICD AND AMPYLATED BIP (STATE 1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDOPLASMIC RETICULUM CHAPERONE BIP; COMPND 3 CHAIN: B; COMPND 4 SYNONYM: 78 KDA GLUCOSE-REGULATED PROTEIN,GRP-78,BINDING- COMPND 5 IMMUNOGLOBULIN PROTEIN,BIP,HEAT SHOCK PROTEIN 70 FAMILY PROTEIN 5, COMPND 6 HSP70 FAMILY PROTEIN 5,HEAT SHOCK PROTEIN FAMILY A MEMBER 5, COMPND 7 IMMUNOGLOBULIN HEAVY CHAIN-BINDING PROTEIN; COMPND 8 EC: 3.6.4.10; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 OTHER_DETAILS: COVALENT MODIFICATION OF T518 WITH AMP MOIETY; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: PROTEIN ADENYLYLTRANSFERASE FICD; COMPND 14 CHAIN: A; COMPND 15 SYNONYM: AMPYLATOR FICD,DE-AMPYLASE FICD,FIC DOMAIN-CONTAINING COMPND 16 PROTEIN,HUNTINGTIN YEAST PARTNER E,HUNTINGTIN-INTERACTING PROTEIN 13, COMPND 17 HIP-13,HUNTINGTIN-INTERACTING PROTEIN E; COMPND 18 EC: 2.7.7.-,3.1.4.-; COMPND 19 ENGINEERED: YES; COMPND 20 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CRICETULUS GRISEUS; SOURCE 3 ORGANISM_COMMON: CHINESE HAMSTER; SOURCE 4 ORGANISM_TAXID: 10029; SOURCE 5 GENE: HSPA5, GRP78, I79_019946; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI M15; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1007065; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: FICD, HIP13, HYPE, UNQ3041/PRO9857; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS FICD, FIC, HYPE, BIP, GRP78, AMPYLATION, DEAMPYLATION, DEAMPYLASE, ER KEYWDS 2 STRESS, COMPLEX, ADENYLATION, ADENYLYLATION, HSP70, CHAPERONE, KEYWDS 3 TRANSFERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR L.A.PERERA,D.RON REVDAT 3 31-JAN-24 7B7Z 1 REMARK REVDAT 2 06-OCT-21 7B7Z 1 JRNL REMARK REVDAT 1 07-JUL-21 7B7Z 0 JRNL AUTH L.A.PERERA,S.PREISSLER,N.R.ZACCAI,S.PREVOST,J.M.DEVOS, JRNL AUTH 2 M.HAERTLEIN,D.RON JRNL TITL STRUCTURES OF A DEAMPYLATION COMPLEX RATIONALISE THE SWITCH JRNL TITL 2 BETWEEN ANTAGONISTIC CATALYTIC ACTIVITIES OF FICD. JRNL REF NAT COMMUN V. 12 5004 2021 JRNL REFN ESSN 2041-1723 JRNL PMID 34408154 JRNL DOI 10.1038/S41467-021-25076-7 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.25 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 109568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 5973 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7927 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.3130 REMARK 3 BIN FREE R VALUE SET COUNT : 473 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6667 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 35 REMARK 3 SOLVENT ATOMS : 960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.60000 REMARK 3 B22 (A**2) : -0.89000 REMARK 3 B33 (A**2) : 1.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.102 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.281 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.951 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7060 ; 0.003 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6712 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9608 ; 1.171 ; 1.649 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15470 ; 1.178 ; 1.580 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 910 ; 5.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 361 ;31.934 ;22.770 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1213 ;12.624 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 45 ;12.666 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 959 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8138 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1563 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 28 B 601 REMARK 3 ORIGIN FOR THE GROUP (A): -34.0413 11.1964 -7.9760 REMARK 3 T TENSOR REMARK 3 T11: 0.0505 T22: 0.0055 REMARK 3 T33: 0.1018 T12: 0.0018 REMARK 3 T13: -0.0043 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 1.6904 L22: 0.8143 REMARK 3 L33: 0.4925 L12: -0.3100 REMARK 3 L13: -0.0595 L23: -0.0009 REMARK 3 S TENSOR REMARK 3 S11: 0.0333 S12: 0.0503 S13: 0.2720 REMARK 3 S21: -0.0008 S22: -0.0330 S23: 0.1128 REMARK 3 S31: -0.1237 S32: -0.0249 S33: -0.0003 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): 8.8859 -11.4098 -7.8529 REMARK 3 T TENSOR REMARK 3 T11: 0.0254 T22: 0.0299 REMARK 3 T33: 0.0569 T12: 0.0103 REMARK 3 T13: -0.0169 T23: -0.0136 REMARK 3 L TENSOR REMARK 3 L11: 1.2281 L22: 0.8290 REMARK 3 L33: 0.3979 L12: 0.0718 REMARK 3 L13: -0.3372 L23: -0.0460 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: 0.0707 S13: 0.0181 REMARK 3 S21: -0.0879 S22: 0.0234 S23: -0.0871 REMARK 3 S31: 0.0338 S32: 0.0555 S33: -0.0290 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7B7Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292112920. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : M REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 115633 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 105.630 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 1.29900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5O4P, 6I7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5 10% PEG 4000 0.2 M REMARK 280 NACL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 47.68550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.81450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 52.03800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.81450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 47.68550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 52.03800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 36630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 27 REMARK 465 ALA A 443 REMARK 465 GLN A 444 REMARK 465 PRO A 445 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 73 CG CD OE1 OE2 REMARK 470 ASN B 104 CG OD1 ND2 REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 ILE B 132 CG1 CG2 CD1 REMARK 470 GLN B 136 CG CD OE1 NE2 REMARK 470 LYS B 138 CD CE NZ REMARK 470 LYS B 163 CD CE NZ REMARK 470 ARG B 214 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 272 CG CD CE NZ REMARK 470 LYS B 276 CG CD CE NZ REMARK 470 ARG B 279 CZ NH1 NH2 REMARK 470 LYS B 280 CG CD CE NZ REMARK 470 SER B 311 OG REMARK 470 GLU B 316 CG CD OE1 OE2 REMARK 470 ARG B 336 NE CZ NH1 NH2 REMARK 470 ARG B 386 CD NE CZ NH1 NH2 REMARK 470 LYS B 521 CG CD CE NZ REMARK 470 LYS B 523 CE NZ REMARK 470 GLN B 530 CG CD OE1 NE2 REMARK 470 ASN B 531 CG OD1 ND2 REMARK 470 GLU B 536 CG CD OE1 OE2 REMARK 470 GLU B 539 CG CD OE1 OE2 REMARK 470 ARG B 540 CD NE CZ NH1 NH2 REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 SER A 213 OG REMARK 470 ARG A 216 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 250 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 251 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE A 282 CG1 CG2 CD1 REMARK 470 SER A 284 OG REMARK 470 MET A 344 CG SD CE REMARK 470 GLU A 442 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 87 51.49 -147.04 REMARK 500 ASP B 105 117.15 -38.97 REMARK 500 ASP B 238 97.13 -162.94 REMARK 500 ASP B 238 99.72 -162.94 REMARK 500 ASP B 413 55.78 -98.12 REMARK 500 ASN B 528 154.76 -49.73 REMARK 500 ARG A 250 14.02 81.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 AMP B 600 O1P REMARK 620 2 HOH B 705 O 73.1 REMARK 620 3 HOH B 792 O 79.4 96.3 REMARK 620 4 HOH B 964 O 134.8 151.6 94.8 REMARK 620 5 ASP A 367 OD1 92.1 86.2 170.0 87.3 REMARK 620 6 HOH A 875 O 148.1 76.4 94.9 76.7 95.1 REMARK 620 N 1 2 3 4 5 DBREF 7B7Z B 28 549 UNP G3I8R9 BIP_CRIGR 28 549 DBREF 7B7Z A 104 445 UNP Q9BVA6 FICD_HUMAN 104 445 SEQADV 7B7Z SER B 27 UNP G3I8R9 EXPRESSION TAG SEQADV 7B7Z ALA B 229 UNP G3I8R9 THR 229 ENGINEERED MUTATION SEQADV 7B7Z PHE B 461 UNP G3I8R9 VAL 461 ENGINEERED MUTATION SEQADV 7B7Z SER A 103 UNP Q9BVA6 EXPRESSION TAG SEQADV 7B7Z ASP A 258 UNP Q9BVA6 LEU 258 ENGINEERED MUTATION SEQADV 7B7Z ALA A 363 UNP Q9BVA6 HIS 363 ENGINEERED MUTATION SEQRES 1 B 523 SER GLY THR VAL VAL GLY ILE ASP LEU GLY THR THR TYR SEQRES 2 B 523 SER CYS VAL GLY VAL PHE LYS ASN GLY ARG VAL GLU ILE SEQRES 3 B 523 ILE ALA ASN ASP GLN GLY ASN ARG ILE THR PRO SER TYR SEQRES 4 B 523 VAL ALA PHE THR PRO GLU GLY GLU ARG LEU ILE GLY ASP SEQRES 5 B 523 ALA ALA LYS ASN GLN LEU THR SER ASN PRO GLU ASN THR SEQRES 6 B 523 VAL PHE ASP ALA LYS ARG LEU ILE GLY ARG THR TRP ASN SEQRES 7 B 523 ASP PRO SER VAL GLN GLN ASP ILE LYS PHE LEU PRO PHE SEQRES 8 B 523 LYS VAL VAL GLU LYS LYS THR LYS PRO TYR ILE GLN VAL SEQRES 9 B 523 ASP ILE GLY GLY GLY GLN THR LYS THR PHE ALA PRO GLU SEQRES 10 B 523 GLU ILE SER ALA MET VAL LEU THR LYS MET LYS GLU THR SEQRES 11 B 523 ALA GLU ALA TYR LEU GLY LYS LYS VAL THR HIS ALA VAL SEQRES 12 B 523 VAL THR VAL PRO ALA TYR PHE ASN ASP ALA GLN ARG GLN SEQRES 13 B 523 ALA THR LYS ASP ALA GLY THR ILE ALA GLY LEU ASN VAL SEQRES 14 B 523 MET ARG ILE ILE ASN GLU PRO THR ALA ALA ALA ILE ALA SEQRES 15 B 523 TYR GLY LEU ASP LYS ARG GLU GLY GLU LYS ASN ILE LEU SEQRES 16 B 523 VAL PHE ASP LEU GLY GLY GLY ALA PHE ASP VAL SER LEU SEQRES 17 B 523 LEU THR ILE ASP ASN GLY VAL PHE GLU VAL VAL ALA THR SEQRES 18 B 523 ASN GLY ASP THR HIS LEU GLY GLY GLU ASP PHE ASP GLN SEQRES 19 B 523 ARG VAL MET GLU HIS PHE ILE LYS LEU TYR LYS LYS LYS SEQRES 20 B 523 THR GLY LYS ASP VAL ARG LYS ASP ASN ARG ALA VAL GLN SEQRES 21 B 523 LYS LEU ARG ARG GLU VAL GLU LYS ALA LYS ARG ALA LEU SEQRES 22 B 523 SER SER GLN HIS GLN ALA ARG ILE GLU ILE GLU SER PHE SEQRES 23 B 523 PHE GLU GLY GLU ASP PHE SER GLU THR LEU THR ARG ALA SEQRES 24 B 523 LYS PHE GLU GLU LEU ASN MET ASP LEU PHE ARG SER THR SEQRES 25 B 523 MET LYS PRO VAL GLN LYS VAL LEU GLU ASP SER ASP LEU SEQRES 26 B 523 LYS LYS SER ASP ILE ASP GLU ILE VAL LEU VAL GLY GLY SEQRES 27 B 523 SER THR ARG ILE PRO LYS ILE GLN GLN LEU VAL LYS GLU SEQRES 28 B 523 PHE PHE ASN GLY LYS GLU PRO SER ARG GLY ILE ASN PRO SEQRES 29 B 523 ASP GLU ALA VAL ALA TYR GLY ALA ALA VAL GLN ALA GLY SEQRES 30 B 523 VAL LEU SER GLY ASP GLN ASP THR GLY ASP LEU VAL LEU SEQRES 31 B 523 LEU ASP VAL CYS PRO LEU THR LEU GLY ILE GLU THR VAL SEQRES 32 B 523 GLY GLY VAL MET THR LYS LEU ILE PRO ARG ASN THR VAL SEQRES 33 B 523 VAL PRO THR LYS LYS SER GLN ILE PHE SER THR ALA SER SEQRES 34 B 523 ASP ASN GLN PRO THR PHE THR ILE LYS VAL TYR GLU GLY SEQRES 35 B 523 GLU ARG PRO LEU THR LYS ASP ASN HIS LEU LEU GLY THR SEQRES 36 B 523 PHE ASP LEU THR GLY ILE PRO PRO ALA PRO ARG GLY VAL SEQRES 37 B 523 PRO GLN ILE GLU VAL THR PHE GLU ILE ASP VAL ASN GLY SEQRES 38 B 523 ILE LEU ARG VAL THR ALA GLU ASP LYS GLY THR GLY ASN SEQRES 39 B 523 LYS ASN LYS ILE THR ILE THR ASN ASP GLN ASN ARG LEU SEQRES 40 B 523 THR PRO GLU GLU ILE GLU ARG MET VAL ASN ASP ALA GLU SEQRES 41 B 523 LYS PHE ALA SEQRES 1 A 343 SER LEU GLU ALA ARG ALA ALA LEU ASN GLN ALA LEU GLU SEQRES 2 A 343 MET LYS ARG GLN GLY LYS ARG GLU LYS ALA GLN LYS LEU SEQRES 3 A 343 PHE MET HIS ALA LEU LYS MET ASP PRO ASP PHE VAL ASP SEQRES 4 A 343 ALA LEU THR GLU PHE GLY ILE PHE SER GLU GLU ASP LYS SEQRES 5 A 343 ASP ILE ILE GLN ALA ASP TYR LEU TYR THR ARG ALA LEU SEQRES 6 A 343 THR ILE SER PRO TYR HIS GLU LYS ALA LEU VAL ASN ARG SEQRES 7 A 343 ASP ARG THR LEU PRO LEU VAL GLU GLU ILE ASP GLN ARG SEQRES 8 A 343 TYR PHE SER ILE ILE ASP SER LYS VAL LYS LYS VAL MET SEQRES 9 A 343 SER ILE PRO LYS GLY ASN SER ALA LEU ARG ARG VAL MET SEQRES 10 A 343 GLU GLU THR TYR TYR HIS HIS ILE TYR HIS THR VAL ALA SEQRES 11 A 343 ILE GLU GLY ASN THR LEU THR LEU SER GLU ILE ARG HIS SEQRES 12 A 343 ILE LEU GLU THR ARG TYR ALA VAL PRO GLY LYS SER ASP SEQRES 13 A 343 GLU GLU GLN ASN GLU VAL ILE GLY MET HIS ALA ALA MET SEQRES 14 A 343 LYS TYR ILE ASN THR THR LEU VAL SER ARG ILE GLY SER SEQRES 15 A 343 VAL THR ILE SER ASP VAL LEU GLU ILE HIS ARG ARG VAL SEQRES 16 A 343 LEU GLY TYR VAL ASP PRO VAL GLU ALA GLY ARG PHE ARG SEQRES 17 A 343 THR THR GLN VAL LEU VAL GLY HIS HIS ILE PRO PRO HIS SEQRES 18 A 343 PRO GLN ASP VAL GLU LYS GLN MET GLN GLU PHE VAL GLN SEQRES 19 A 343 TRP LEU ASN SER GLU GLU ALA MET ASN LEU HIS PRO VAL SEQRES 20 A 343 GLU PHE ALA ALA LEU ALA HIS TYR LYS LEU VAL TYR ILE SEQRES 21 A 343 ALA PRO PHE ILE ASP GLY ASN GLY ARG THR SER ARG LEU SEQRES 22 A 343 LEU MET ASN LEU ILE LEU MET GLN ALA GLY TYR PRO PRO SEQRES 23 A 343 ILE THR ILE ARG LYS GLU GLN ARG SER ASP TYR TYR HIS SEQRES 24 A 343 VAL LEU GLU ALA ALA ASN GLU GLY ASP VAL ARG PRO PHE SEQRES 25 A 343 ILE ARG PHE ILE ALA LYS CYS THR GLU THR THR LEU ASP SEQRES 26 A 343 THR LEU LEU PHE ALA THR THR GLU TYR SER VAL ALA LEU SEQRES 27 A 343 PRO GLU ALA GLN PRO HET AMP B 600 22 HET MES B 601 12 HET MG A 500 1 HETNAM AMP ADENOSINE MONOPHOSPHATE HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETNAM MG MAGNESIUM ION FORMUL 3 AMP C10 H14 N5 O7 P FORMUL 4 MES C6 H13 N O4 S FORMUL 5 MG MG 2+ FORMUL 6 HOH *960(H2 O) HELIX 1 AA1 GLY B 77 ASN B 82 1 6 HELIX 2 AA2 ASN B 87 GLU B 89 5 3 HELIX 3 AA3 ASP B 94 LEU B 98 5 5 HELIX 4 AA4 ASP B 105 LYS B 113 1 9 HELIX 5 AA5 ALA B 141 GLY B 162 1 22 HELIX 6 AA6 ASN B 177 ALA B 191 1 15 HELIX 7 AA7 GLU B 201 LEU B 211 1 11 HELIX 8 AA8 GLY B 254 GLY B 275 1 22 HELIX 9 AA9 ASP B 281 LEU B 299 1 19 HELIX 10 AB1 ARG B 324 THR B 338 1 15 HELIX 11 AB2 THR B 338 ASP B 350 1 13 HELIX 12 AB3 LYS B 352 ILE B 356 5 5 HELIX 13 AB4 GLY B 363 ARG B 367 5 5 HELIX 14 AB5 ILE B 368 PHE B 379 1 12 HELIX 15 AB6 GLU B 392 GLY B 407 1 16 HELIX 16 AB7 LEU B 472 ASN B 476 5 5 HELIX 17 AB8 THR B 534 LYS B 547 1 14 HELIX 18 AB9 LEU A 104 GLY A 120 1 17 HELIX 19 AC1 LYS A 121 ASP A 136 1 16 HELIX 20 AC2 PHE A 139 ASP A 153 1 15 HELIX 21 AC3 ASP A 155 SER A 170 1 16 HELIX 22 AC4 HIS A 173 SER A 207 1 35 HELIX 23 AC5 SER A 213 ILE A 233 1 21 HELIX 24 AC6 THR A 239 ARG A 250 1 12 HELIX 25 AC7 SER A 257 LEU A 278 1 22 HELIX 26 AC8 THR A 286 LEU A 298 1 13 HELIX 27 AC9 HIS A 323 GLN A 325 5 3 HELIX 28 AD1 ASP A 326 ASN A 339 1 14 HELIX 29 AD2 SER A 340 ASN A 345 1 6 HELIX 30 AD3 HIS A 347 ALA A 363 1 17 HELIX 31 AD4 GLY A 368 ALA A 384 1 17 HELIX 32 AD5 ARG A 392 GLU A 394 5 3 HELIX 33 AD6 GLN A 395 GLU A 408 1 14 HELIX 34 AD7 VAL A 411 THR A 433 1 23 SHEET 1 AA1 3 ARG B 49 ILE B 52 0 SHEET 2 AA1 3 TYR B 39 LYS B 46 -1 N VAL B 44 O GLU B 51 SHEET 3 AA1 3 THR B 62 PRO B 63 -1 O THR B 62 N SER B 40 SHEET 1 AA2 5 ARG B 49 ILE B 52 0 SHEET 2 AA2 5 TYR B 39 LYS B 46 -1 N VAL B 44 O GLU B 51 SHEET 3 AA2 5 VAL B 30 LEU B 35 -1 N ASP B 34 O CYS B 41 SHEET 4 AA2 5 HIS B 167 VAL B 172 1 O VAL B 169 N ILE B 33 SHEET 5 AA2 5 ASN B 194 ASN B 200 1 O ASN B 194 N ALA B 168 SHEET 1 AA3 3 ARG B 74 ILE B 76 0 SHEET 2 AA3 3 VAL B 66 PHE B 68 -1 N ALA B 67 O LEU B 75 SHEET 3 AA3 3 THR B 91 VAL B 92 -1 O VAL B 92 N VAL B 66 SHEET 1 AA4 3 LYS B 118 LYS B 122 0 SHEET 2 AA4 3 LYS B 125 ASP B 131 -1 O TYR B 127 N VAL B 120 SHEET 3 AA4 3 THR B 137 PHE B 140 -1 O PHE B 140 N ILE B 128 SHEET 1 AA5 5 GLU B 358 VAL B 362 0 SHEET 2 AA5 5 LYS B 218 LEU B 225 1 N PHE B 223 O VAL B 360 SHEET 3 AA5 5 PHE B 230 ASP B 238 -1 O SER B 233 N VAL B 222 SHEET 4 AA5 5 VAL B 241 ASP B 250 -1 O VAL B 245 N LEU B 234 SHEET 5 AA5 5 VAL B 415 LEU B 417 1 O VAL B 415 N PHE B 242 SHEET 1 AA6 2 GLN B 304 PHE B 313 0 SHEET 2 AA6 2 GLU B 316 THR B 323 -1 O GLU B 320 N ILE B 307 SHEET 1 AA7 5 VAL B 432 ILE B 437 0 SHEET 2 AA7 5 LEU B 424 THR B 428 -1 N LEU B 424 O LEU B 436 SHEET 3 AA7 5 THR B 460 GLU B 467 -1 O TYR B 466 N GLY B 425 SHEET 4 AA7 5 HIS B 477 THR B 485 -1 O LEU B 484 N PHE B 461 SHEET 5 AA7 5 THR B 525 THR B 527 -1 O THR B 525 N THR B 485 SHEET 1 AA8 3 THR B 445 PHE B 451 0 SHEET 2 AA8 3 ILE B 497 ILE B 503 -1 O PHE B 501 N LYS B 447 SHEET 3 AA8 3 LEU B 509 ASP B 515 -1 O THR B 512 N THR B 500 SHEET 1 AA9 2 THR B 518 ASN B 520 0 SHEET 2 AA9 2 VAL A 314 VAL A 316 -1 O LEU A 315 N GLY B 519 LINK OG1 THR B 518 P AMP B 600 1555 1555 1.59 LINK O1P AMP B 600 MG MG A 500 1555 1555 2.08 LINK O HOH B 705 MG MG A 500 1555 1555 2.08 LINK O HOH B 792 MG MG A 500 1555 1555 2.09 LINK O HOH B 964 MG MG A 500 1555 1555 2.08 LINK OD1 ASP A 367 MG MG A 500 1555 1555 2.09 LINK MG MG A 500 O HOH A 875 1555 1555 2.08 CISPEP 1 VAL B 443 PRO B 444 0 0.32 CRYST1 95.371 104.076 105.629 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010485 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009608 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009467 0.00000