HEADER VIRAL PROTEIN 16-DEC-20 7BB2 TITLE CRYSTAL STRUCTURE OF THE MAIN PROTEASE (3CLPRO/MPRO) OF SARS-COV-2 AT TITLE 2 1.6A RESOLUTION (SPACEGROUP P2(1)2(1)2(1)) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 5 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SARS-COV-2, MPRO, 3CLPRO, EXSCALATE4COV, DRUG DISCOVERY, ELETTRA, KEYWDS 2 VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.COSTANZI,N.DEMITRI,B.GIABBAI,P.STORICI REVDAT 3 31-JAN-24 7BB2 1 REMARK REVDAT 2 24-NOV-21 7BB2 1 COMPND SOURCE JRNL REVDAT 1 03-MAR-21 7BB2 0 JRNL AUTH E.COSTANZI,M.KUZIKOV,F.ESPOSITO,S.ALBANI,N.DEMITRI, JRNL AUTH 2 B.GIABBAI,M.CAMASTA,E.TRAMONTANO,G.ROSSETTI,A.ZALIANI, JRNL AUTH 3 P.STORICI JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE DUAL INHIBITION JRNL TITL 2 OF MG-132 AGAINST SARS-COV-2 MAIN PROTEASE (MPRO/3CLPRO) AND JRNL TITL 3 HUMAN CATHEPSIN-L. JRNL REF INT J MOL SCI V. 22 2021 JRNL REFN ESSN 1422-0067 JRNL PMID 34769210 JRNL DOI 10.3390/IJMS222111779 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 55.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 93191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 4635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 55.9600 - 4.9700 1.00 3179 165 0.1775 0.1795 REMARK 3 2 4.9700 - 3.9500 1.00 3056 161 0.1319 0.1679 REMARK 3 3 3.9500 - 3.4500 1.00 2999 155 0.1493 0.1713 REMARK 3 4 3.4500 - 3.1300 1.00 3009 150 0.1575 0.1846 REMARK 3 5 3.1300 - 2.9100 1.00 3016 140 0.1580 0.1905 REMARK 3 6 2.9100 - 2.7400 1.00 2964 151 0.1589 0.1826 REMARK 3 7 2.7400 - 2.6000 1.00 2959 161 0.1551 0.1710 REMARK 3 8 2.6000 - 2.4900 1.00 2949 166 0.1600 0.2091 REMARK 3 9 2.4900 - 2.3900 1.00 2949 172 0.1588 0.1779 REMARK 3 10 2.3900 - 2.3100 1.00 2923 162 0.1547 0.1593 REMARK 3 11 2.3100 - 2.2400 1.00 2952 167 0.1547 0.1561 REMARK 3 12 2.2400 - 2.1700 1.00 2906 172 0.1567 0.1685 REMARK 3 13 2.1700 - 2.1100 1.00 2967 131 0.1579 0.1907 REMARK 3 14 2.1100 - 2.0600 1.00 2963 149 0.1634 0.2001 REMARK 3 15 2.0600 - 2.0200 1.00 2921 157 0.1675 0.2122 REMARK 3 16 2.0200 - 1.9700 1.00 2918 157 0.1625 0.2035 REMARK 3 17 1.9700 - 1.9300 1.00 2911 160 0.1699 0.2261 REMARK 3 18 1.9300 - 1.9000 1.00 2964 138 0.1810 0.2106 REMARK 3 19 1.9000 - 1.8600 1.00 2957 131 0.1904 0.2079 REMARK 3 20 1.8600 - 1.8300 1.00 2919 155 0.1952 0.2301 REMARK 3 21 1.8300 - 1.8000 1.00 2911 174 0.1961 0.2322 REMARK 3 22 1.8000 - 1.7700 1.00 2915 135 0.1912 0.2214 REMARK 3 23 1.7700 - 1.7500 1.00 2949 144 0.2026 0.2160 REMARK 3 24 1.7500 - 1.7200 1.00 2919 146 0.2076 0.2500 REMARK 3 25 1.7200 - 1.7000 1.00 2908 162 0.2164 0.2344 REMARK 3 26 1.7000 - 1.6800 1.00 2908 176 0.2221 0.2509 REMARK 3 27 1.6800 - 1.6600 1.00 2898 157 0.2416 0.2560 REMARK 3 28 1.6600 - 1.6400 1.00 2933 135 0.2518 0.2987 REMARK 3 29 1.6400 - 1.6200 1.00 2932 153 0.2628 0.2668 REMARK 3 30 1.6200 - 1.6000 1.00 2902 153 0.2687 0.2907 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.146 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.985 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4875 REMARK 3 ANGLE : 0.973 6604 REMARK 3 CHIRALITY : 0.051 741 REMARK 3 PLANARITY : 0.006 859 REMARK 3 DIHEDRAL : 19.499 1744 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1525 -7.3398 -18.1902 REMARK 3 T TENSOR REMARK 3 T11: 0.1945 T22: 0.2383 REMARK 3 T33: 0.2023 T12: 0.0531 REMARK 3 T13: 0.0030 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 1.2469 L22: 0.6960 REMARK 3 L33: 1.7250 L12: 0.0984 REMARK 3 L13: -0.3997 L23: 0.0428 REMARK 3 S TENSOR REMARK 3 S11: -0.1188 S12: -0.1140 S13: 0.0016 REMARK 3 S21: 0.0219 S22: 0.0303 S23: -0.0303 REMARK 3 S31: 0.0984 S32: 0.2478 S33: 0.0832 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 58 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.0130 0.4030 -33.5292 REMARK 3 T TENSOR REMARK 3 T11: 0.2614 T22: 0.3712 REMARK 3 T33: 0.2852 T12: 0.0523 REMARK 3 T13: 0.0070 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 2.8861 L22: 0.5880 REMARK 3 L33: 3.1475 L12: -0.6578 REMARK 3 L13: 1.7684 L23: -1.3532 REMARK 3 S TENSOR REMARK 3 S11: -0.2567 S12: -0.3352 S13: 0.5289 REMARK 3 S21: 0.2367 S22: 0.0915 S23: -0.1141 REMARK 3 S31: -0.5769 S32: -0.1337 S33: 0.0784 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 59 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9811 -6.8895 -16.6661 REMARK 3 T TENSOR REMARK 3 T11: 0.2604 T22: 0.6152 REMARK 3 T33: 0.2730 T12: 0.0786 REMARK 3 T13: -0.0094 T23: 0.0514 REMARK 3 L TENSOR REMARK 3 L11: 1.4038 L22: 0.5576 REMARK 3 L33: 2.8685 L12: 0.4028 REMARK 3 L13: -1.4353 L23: -1.0896 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: -0.9895 S13: -0.0905 REMARK 3 S21: 0.2158 S22: -0.0021 S23: -0.0547 REMARK 3 S31: -0.1077 S32: 0.7746 S33: -0.0226 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 77 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9851 -14.8118 -22.6792 REMARK 3 T TENSOR REMARK 3 T11: 0.2297 T22: 0.2709 REMARK 3 T33: 0.2279 T12: 0.1098 REMARK 3 T13: 0.0436 T23: 0.0610 REMARK 3 L TENSOR REMARK 3 L11: 1.1600 L22: 0.6856 REMARK 3 L33: 0.8666 L12: -0.1909 REMARK 3 L13: 0.0728 L23: -0.2606 REMARK 3 S TENSOR REMARK 3 S11: -0.1491 S12: -0.1451 S13: -0.2876 REMARK 3 S21: 0.0727 S22: -0.0235 S23: -0.0892 REMARK 3 S31: 0.2520 S32: 0.3513 S33: 0.1446 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.1096 -4.8056 -24.4489 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: 0.1699 REMARK 3 T33: 0.2059 T12: 0.0129 REMARK 3 T13: 0.0019 T23: 0.0180 REMARK 3 L TENSOR REMARK 3 L11: 2.3385 L22: 0.7223 REMARK 3 L33: 2.2994 L12: -0.3893 REMARK 3 L13: -0.1781 L23: 0.4658 REMARK 3 S TENSOR REMARK 3 S11: -0.0301 S12: 0.0172 S13: 0.0371 REMARK 3 S21: 0.0484 S22: -0.0505 S23: -0.0321 REMARK 3 S31: -0.0135 S32: 0.1397 S33: 0.0707 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0625 -3.6396 -34.0538 REMARK 3 T TENSOR REMARK 3 T11: 0.1673 T22: 0.2234 REMARK 3 T33: 0.2036 T12: 0.0176 REMARK 3 T13: -0.0097 T23: 0.0258 REMARK 3 L TENSOR REMARK 3 L11: 2.2432 L22: 0.1398 REMARK 3 L33: 0.4112 L12: -0.0069 REMARK 3 L13: 0.0065 L23: 0.0773 REMARK 3 S TENSOR REMARK 3 S11: -0.0444 S12: 0.3393 S13: 0.3118 REMARK 3 S21: -0.0676 S22: 0.0536 S23: 0.0206 REMARK 3 S31: 0.0122 S32: 0.0244 S33: 0.0020 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 306 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.1805 -7.6293 -32.6353 REMARK 3 T TENSOR REMARK 3 T11: 0.1598 T22: 0.1994 REMARK 3 T33: 0.1870 T12: 0.0119 REMARK 3 T13: 0.0024 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 1.5754 L22: 1.1656 REMARK 3 L33: 1.4994 L12: -0.2935 REMARK 3 L13: 0.6860 L23: -0.0891 REMARK 3 S TENSOR REMARK 3 S11: -0.0245 S12: -0.1246 S13: -0.0835 REMARK 3 S21: 0.0789 S22: 0.0353 S23: 0.0602 REMARK 3 S31: -0.0366 S32: -0.0768 S33: -0.0019 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7961 -6.9761 -7.9339 REMARK 3 T TENSOR REMARK 3 T11: 0.2282 T22: 0.2122 REMARK 3 T33: 0.2334 T12: 0.0510 REMARK 3 T13: 0.0193 T23: 0.0283 REMARK 3 L TENSOR REMARK 3 L11: 1.0348 L22: 1.8042 REMARK 3 L33: 2.3119 L12: 0.0577 REMARK 3 L13: -0.4469 L23: -0.7224 REMARK 3 S TENSOR REMARK 3 S11: 0.0504 S12: 0.0636 S13: 0.0712 REMARK 3 S21: -0.2015 S22: -0.0037 S23: 0.1366 REMARK 3 S31: 0.2804 S32: 0.1882 S33: 0.0310 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.1258 -8.3294 1.9119 REMARK 3 T TENSOR REMARK 3 T11: 0.2050 T22: 0.1404 REMARK 3 T33: 0.1829 T12: -0.0046 REMARK 3 T13: 0.0094 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 1.8611 L22: 1.4452 REMARK 3 L33: 2.9299 L12: -0.7345 REMARK 3 L13: -0.0759 L23: -0.4208 REMARK 3 S TENSOR REMARK 3 S11: -0.0402 S12: -0.1156 S13: -0.2123 REMARK 3 S21: 0.0326 S22: 0.0267 S23: 0.1156 REMARK 3 S31: 0.3520 S32: -0.0873 S33: 0.0109 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 201 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.8675 20.5800 -20.9294 REMARK 3 T TENSOR REMARK 3 T11: 0.3200 T22: 0.1661 REMARK 3 T33: 0.2623 T12: -0.0008 REMARK 3 T13: 0.0959 T23: 0.0254 REMARK 3 L TENSOR REMARK 3 L11: 0.5035 L22: 1.4986 REMARK 3 L33: 0.8672 L12: 0.2140 REMARK 3 L13: 0.1137 L23: -1.0587 REMARK 3 S TENSOR REMARK 3 S11: 0.0649 S12: 0.1296 S13: 0.1753 REMARK 3 S21: -0.1166 S22: -0.0243 S23: -0.3949 REMARK 3 S31: -0.3156 S32: -0.0113 S33: -0.0235 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 227 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2105 18.7740 -15.7151 REMARK 3 T TENSOR REMARK 3 T11: 0.4243 T22: 0.1882 REMARK 3 T33: 0.2550 T12: 0.0136 REMARK 3 T13: 0.0672 T23: 0.0217 REMARK 3 L TENSOR REMARK 3 L11: 1.6629 L22: 2.5843 REMARK 3 L33: 2.7160 L12: 0.3882 REMARK 3 L13: -0.6838 L23: -0.1673 REMARK 3 S TENSOR REMARK 3 S11: 0.1771 S12: 0.1123 S13: 0.2290 REMARK 3 S21: 0.0773 S22: 0.0400 S23: 0.0602 REMARK 3 S31: -0.8024 S32: -0.0078 S33: -0.1413 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BB2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 16-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292113070. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9716 REMARK 200 MONOCHROMATOR : SI(111) DCM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93301 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 103.750 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.70 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7ALH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M D-GLUCOSE, 0.1M D-MANNOSE, 0.1M D REMARK 280 -GALACTOSE, 0.1M L-FUCOSE, 0.1M D-XYLOSE, 0.1M N-ACETYL-D- REMARK 280 GLUCOSAMINE, 0.1 M IMIDAZOLE/MES MONOHYDRATE (ACID) PH 6.5, 20% REMARK 280 V/V ETHYLENE GLYCOL, 10 % W/V PEG 8000, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.75850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.87650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.01400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.87650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.75850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.01400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 302 REMARK 465 VAL B 303 REMARK 465 THR B 304 REMARK 465 PHE B 305 REMARK 465 GLN B 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -130.92 53.28 REMARK 500 ASN A 51 59.69 -144.22 REMARK 500 ASN A 84 -124.48 54.86 REMARK 500 ASP A 155 9.38 59.84 REMARK 500 ASP B 33 -135.53 50.76 REMARK 500 ASN B 51 69.78 -155.81 REMARK 500 ASN B 84 -126.82 53.57 REMARK 500 TYR B 154 -108.85 57.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 854 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 855 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH A 856 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A 857 DISTANCE = 6.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 406 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 221 O REMARK 620 2 ASN B 221 OD1 74.5 REMARK 620 3 PHE B 223 O 112.4 94.9 REMARK 620 4 ASP B 263 O 155.2 115.1 90.2 REMARK 620 5 ASP B 263 OD2 96.3 168.1 95.6 70.4 REMARK 620 6 HOH B 532 O 79.8 95.0 165.9 76.6 75.6 REMARK 620 N 1 2 3 4 5 DBREF 7BB2 A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 DBREF 7BB2 B 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN HET EDO A 401 10 HET EDO A 402 10 HET EDO A 403 10 HET EDO A 404 10 HET EDO A 405 10 HET EDO A 406 10 HET EDO A 407 10 HET EDO A 408 10 HET EDO A 409 10 HET CL A 410 1 HET EDO B 401 10 HET EDO B 402 10 HET EDO B 403 10 HET EDO B 404 10 HET EDO B 405 10 HET NA B 406 1 HETNAM EDO 1,2-ETHANEDIOL HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 14(C2 H6 O2) FORMUL 12 CL CL 1- FORMUL 18 NA NA 1+ FORMUL 19 HOH *588(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 SER A 46 LEU A 50 5 5 HELIX 4 AA4 ASN A 53 ARG A 60 1 8 HELIX 5 AA5 LYS A 61 PHE A 66 5 6 HELIX 6 AA6 ILE A 152 CYS A 156 5 5 HELIX 7 AA7 ILE A 200 ASN A 214 1 15 HELIX 8 AA8 THR A 226 MET A 235 1 10 HELIX 9 AA9 LYS A 236 ASN A 238 5 3 HELIX 10 AB1 THR A 243 LEU A 250 1 8 HELIX 11 AB2 LEU A 250 GLY A 258 1 9 HELIX 12 AB3 ALA A 260 GLY A 275 1 16 HELIX 13 AB4 THR A 292 CYS A 300 1 9 HELIX 14 AB5 SER B 10 GLY B 15 1 6 HELIX 15 AB6 HIS B 41 CYS B 44 5 4 HELIX 16 AB7 THR B 45 ASN B 51 1 7 HELIX 17 AB8 ASN B 53 LYS B 61 1 9 HELIX 18 AB9 SER B 62 HIS B 64 5 3 HELIX 19 AC1 ILE B 200 ASN B 214 1 15 HELIX 20 AC2 THR B 226 TYR B 237 1 12 HELIX 21 AC3 THR B 243 GLY B 258 1 16 HELIX 22 AC4 ALA B 260 GLY B 275 1 16 HELIX 23 AC5 THR B 292 SER B 301 1 10 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 LEU A 67 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O TYR A 37 N LEU A 30 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 89 N VAL A 36 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 5 TYR A 101 PHE A 103 0 SHEET 2 AA2 5 VAL A 157 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 5 VAL A 148 ASN A 151 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 TYR A 101 PHE A 103 0 SHEET 2 AA3 3 VAL A 157 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 PHE B 66 ALA B 70 -1 N ALA B 70 O VAL B 73 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O TYR B 37 N LEU B 30 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N SER B 81 O LYS B 88 SHEET 1 AA5 5 LYS B 100 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O TYR B 126 N VAL B 114 SHEET 1 AA6 3 LYS B 100 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O VAL B 157 N LYS B 100 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 LINK O ASN B 221 NA NA B 406 1555 1555 2.57 LINK OD1 ASN B 221 NA NA B 406 1555 1555 2.31 LINK O PHE B 223 NA NA B 406 1555 1555 2.27 LINK O ASP B 263 NA NA B 406 1555 1555 3.02 LINK OD2 ASP B 263 NA NA B 406 1555 1555 2.22 LINK NA NA B 406 O HOH B 532 1555 1555 2.39 CRYST1 67.517 100.028 103.753 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014811 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009997 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009638 0.00000