HEADER SUGAR BINDING PROTEIN 17-DEC-20 7BBI TITLE JOINT X-RAY/NEUTRON ROOM TEMPERATURE STRUCTURE OF H/D-EXCHANGED PLL TITLE 2 LECTIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLL LECTIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHOTORHABDUS LAUMONDII; SOURCE 3 ORGANISM_TAXID: 2218628; SOURCE 4 GENE: CKY10_20885; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PROPELLER, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION; NEUTRON DIFFRACTION AUTHOR L.GAJDOS,M.P.BLAKELEY,A.KUMAR,M.WIMMEROVA,M.HAERTLEIN,V.T.FORSYTH, AUTHOR 2 A.IMBERTY,J.M.DEVOS REVDAT 5 09-OCT-24 7BBI 1 REMARK REVDAT 4 01-MAY-24 7BBI 1 REMARK REVDAT 3 15-SEP-21 7BBI 1 JRNL REVDAT 2 14-APR-21 7BBI 1 JRNL REVDAT 1 17-MAR-21 7BBI 0 JRNL AUTH L.GAJDOS,M.P.BLAKELEY,A.KUMAR,M.WIMMEROVA,M.HAERTLEIN, JRNL AUTH 2 V.T.FORSYTH,A.IMBERTY,J.M.DEVOS JRNL TITL VISUALIZATION OF HYDROGEN ATOMS IN A PERDEUTERATED JRNL TITL 2 LECTIN-FUCOSE COMPLEX REVEALS KEY DETAILS OF JRNL TITL 3 PROTEIN-CARBOHYDRATE INTERACTIONS. JRNL REF STRUCTURE V. 29 1003 2021 JRNL REFN ISSN 0969-2126 JRNL PMID 33765407 JRNL DOI 10.1016/J.STR.2021.03.003 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.16_3549 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.84 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 56568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.156 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.8400 - 4.6100 0.95 2760 146 0.1047 0.1093 REMARK 3 2 4.6100 - 3.6600 0.96 2690 140 0.0959 0.1036 REMARK 3 3 3.6600 - 3.2000 0.97 2684 143 0.1166 0.1521 REMARK 3 4 3.2000 - 2.9100 0.98 2669 140 0.1301 0.1700 REMARK 3 5 2.9100 - 2.7000 0.98 2687 141 0.1379 0.1709 REMARK 3 6 2.7000 - 2.5400 0.98 2670 141 0.1360 0.1466 REMARK 3 7 2.5400 - 2.4100 0.98 2668 142 0.1301 0.1590 REMARK 3 8 2.4100 - 2.3100 0.99 2697 141 0.1253 0.1669 REMARK 3 9 2.3100 - 2.2200 0.99 2682 140 0.1220 0.1314 REMARK 3 10 2.2200 - 2.1400 0.99 2677 141 0.1272 0.1507 REMARK 3 11 2.1400 - 2.0700 0.99 2698 143 0.1338 0.1700 REMARK 3 12 2.0700 - 2.0200 0.99 2675 140 0.1324 0.1673 REMARK 3 13 2.0200 - 1.9600 1.00 2678 141 0.1595 0.1682 REMARK 3 14 1.9600 - 1.9100 1.00 2688 142 0.1693 0.1899 REMARK 3 15 1.9100 - 1.8700 0.99 2696 142 0.1661 0.2047 REMARK 3 16 1.8700 - 1.8300 1.00 2702 142 0.1734 0.2131 REMARK 3 17 1.8300 - 1.7900 1.00 2664 140 0.1974 0.2075 REMARK 3 18 1.7900 - 1.7600 1.00 2679 141 0.2448 0.2618 REMARK 3 19 1.7600 - 1.7300 1.00 2692 141 0.3039 0.2927 REMARK 3 20 1.7300 - 1.7000 1.00 2684 141 0.4181 0.4159 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 81.5 REMARK 3 NUMBER OF REFLECTIONS : 21821 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.216 REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 6941 REMARK 3 ANGLE : 1.312 11575 REMARK 3 CHIRALITY : 0.086 447 REMARK 3 PLANARITY : 0.007 1387 REMARK 3 DIHEDRAL : 15.608 2472 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BBI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292113081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-18 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM30A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.980 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56577 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.78000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 03-SEP-18 REMARK 230 TEMPERATURE (KELVIN) : 293.0 REMARK 230 PH : NULL REMARK 230 NUMBER OF CRYSTALS USED : NULL REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : LADI III REMARK 230 WAVELENGTH OR RANGE (A) : 3.1-4.1 REMARK 230 MONOCHROMATOR : NULL REMARK 230 OPTICS : NULL REMARK 230 REMARK 230 DETECTOR TYPE : IMAGE PLATE REMARK 230 DETECTOR MANUFACTURER : LADI III REMARK 230 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 230 DATA SCALING SOFTWARE : XSCALE, SCALA REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 21855 REMARK 230 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 230 RESOLUTION RANGE LOW (A) : 39.000 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 82.9 REMARK 230 DATA REDUNDANCY : 2.800 REMARK 230 R MERGE (I) : 0.18000 REMARK 230 R SYM (I) : NULL REMARK 230 FOR THE DATA SET : 2.8000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 230 COMPLETENESS FOR SHELL (%) : NULL REMARK 230 DATA REDUNDANCY IN SHELL : NULL REMARK 230 R MERGE FOR SHELL (I) : 0.46000 REMARK 230 R SYM FOR SHELL (I) : NULL REMARK 230 FOR SHELL : NULL REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 230 SOFTWARE USED : PHENIX REMARK 230 STARTING MODEL: NULL REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.12 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.08 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, PD 4.2, 8 % REMARK 280 (W/V) PEG 4000 DISSOLVED IN D2O, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.34000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 44.67000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 79.69000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.34000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 44.67000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.69000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.34000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 44.67000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.69000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.34000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 44.67000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 79.69000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 565 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASN A 3 REMARK 465 PRO A 4 REMARK 465 ASP A 5 REMARK 465 ASN A 6 REMARK 465 THR A 7 REMARK 465 GLU A 8 REMARK 465 ALA A 9 REMARK 465 HIS A 10 REMARK 465 VAL A 11 REMARK 465 ALA A 12 REMARK 465 GLY A 13 REMARK 465 GLU A 14 REMARK 465 VAL A 15 REMARK 465 GLU A 16 REMARK 465 HIS A 371 REMARK 465 HIS A 372 REMARK 465 HIS A 373 REMARK 465 HIS A 374 REMARK 465 HIS A 375 REMARK 465 HIS A 376 REMARK 465 TRP A 377 REMARK 465 ARG A 378 REMARK 465 SER A 379 REMARK 465 GLY A 380 REMARK 465 CYS A 381 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 481 D2 HOH A 637 1.56 REMARK 500 O HOH A 481 O HOH A 637 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 246 CB SER A 246 OG -0.095 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 86 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 96 18.61 59.40 REMARK 500 ASN A 109 41.23 -97.31 REMARK 500 SER A 113 174.99 66.50 REMARK 500 TYR A 118 -145.21 64.81 REMARK 500 LYS A 214 -163.23 55.66 REMARK 500 LYS A 214 -49.77 93.97 REMARK 500 SER A 215 130.47 58.22 REMARK 500 SER A 215 -149.19 -57.72 REMARK 500 ASP A 228 -2.26 -55.99 REMARK 500 ASP A 228 -3.47 -55.99 REMARK 500 ASN A 299 10.87 53.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 299 GLY A 300 -145.56 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7BBI A 1 368 UNP A0A329WTS5_9GAMM DBREF2 7BBI A A0A329WTS5 8 375 SEQADV 7BBI HIS A 10 UNP A0A329WTS TYR 17 CONFLICT SEQADV 7BBI VAL A 139 UNP A0A329WTS ALA 146 CONFLICT SEQADV 7BBI LEU A 369 UNP A0A329WTS EXPRESSION TAG SEQADV 7BBI GLU A 370 UNP A0A329WTS EXPRESSION TAG SEQADV 7BBI HIS A 371 UNP A0A329WTS EXPRESSION TAG SEQADV 7BBI HIS A 372 UNP A0A329WTS EXPRESSION TAG SEQADV 7BBI HIS A 373 UNP A0A329WTS EXPRESSION TAG SEQADV 7BBI HIS A 374 UNP A0A329WTS EXPRESSION TAG SEQADV 7BBI HIS A 375 UNP A0A329WTS EXPRESSION TAG SEQADV 7BBI HIS A 376 UNP A0A329WTS EXPRESSION TAG SEQADV 7BBI TRP A 377 UNP A0A329WTS EXPRESSION TAG SEQADV 7BBI ARG A 378 UNP A0A329WTS EXPRESSION TAG SEQADV 7BBI SER A 379 UNP A0A329WTS EXPRESSION TAG SEQADV 7BBI GLY A 380 UNP A0A329WTS EXPRESSION TAG SEQADV 7BBI CYS A 381 UNP A0A329WTS EXPRESSION TAG SEQRES 1 A 381 MET PRO ASN PRO ASP ASN THR GLU ALA HIS VAL ALA GLY SEQRES 2 A 381 GLU VAL GLU ILE GLU ASN SER ALA ILE ALA LEU SER GLY SEQRES 3 A 381 ILE VAL SER VAL ALA ASN ASN ALA ASP ASN ARG LEU GLU SEQRES 4 A 381 VAL PHE GLY VAL SER THR ASP SER ALA VAL TRP HIS ASN SEQRES 5 A 381 TRP GLN THR ALA PRO LEU PRO ASN SER SER TRP ALA GLY SEQRES 6 A 381 TRP ASN LYS PHE ASN GLY VAL VAL THR SER LYS PRO ALA SEQRES 7 A 381 VAL HIS ARG ASN SER ASP GLY ARG LEU GLU VAL PHE VAL SEQRES 8 A 381 ARG GLY THR ASP ASN ALA LEU TRP HIS ASN TRP GLN THR SEQRES 9 A 381 ALA ALA ASP THR ASN THR TRP SER SER TRP GLN PRO LEU SEQRES 10 A 381 TYR GLY GLY ILE THR SER ASN PRO GLU VAL CYS LEU ASN SEQRES 11 A 381 SER ASP GLY ARG LEU GLU VAL PHE VAL ARG GLY SER ASP SEQRES 12 A 381 ASN ALA LEU TRP HIS ILE TRP GLN THR ALA ALA HIS THR SEQRES 13 A 381 ASN SER TRP SER ASN TRP LYS SER LEU GLY GLY THR LEU SEQRES 14 A 381 THR SER ASN PRO ALA ALA HIS LEU ASN ALA ASP GLY ARG SEQRES 15 A 381 ILE GLU VAL PHE ALA ARG GLY ALA ASP ASN ALA LEU TRP SEQRES 16 A 381 HIS ILE TRP GLN THR ALA ALA HIS THR ASP GLN TRP SER SEQRES 17 A 381 ASN TRP GLN SER LEU LYS SER VAL ILE THR SER ASP PRO SEQRES 18 A 381 VAL VAL ILE ASN ASN CYS ASP GLY ARG LEU GLU VAL PHE SEQRES 19 A 381 ALA ARG GLY ALA ASP SER THR LEU ARG HIS ILE SER GLN SEQRES 20 A 381 ILE GLY SER ASP SER VAL SER TRP SER ASN TRP GLN CYS SEQRES 21 A 381 LEU ASP GLY VAL ILE THR SER ALA PRO ALA ALA VAL LYS SEQRES 22 A 381 ASN ILE SER GLY GLN LEU GLU VAL PHE ALA ARG GLY ALA SEQRES 23 A 381 ASP ASN THR LEU TRP ARG THR TRP GLN THR SER HIS ASN SEQRES 24 A 381 GLY PRO TRP SER ASN TRP SER SER PHE THR GLY ILE ILE SEQRES 25 A 381 ALA SER ALA PRO THR VAL ALA LYS ASN SER ASP GLY ARG SEQRES 26 A 381 ILE GLU VAL PHE VAL LEU GLY LEU ASP LYS ALA LEU TRP SEQRES 27 A 381 HIS LEU TRP GLN THR THR SER SER THR THR SER SER TRP SEQRES 28 A 381 THR THR TRP ALA LEU ILE GLY GLY ILE THR LEU ILE ASP SEQRES 29 A 381 ALA SER VAL ILE LEU GLU HIS HIS HIS HIS HIS HIS TRP SEQRES 30 A 381 ARG SER GLY CYS FORMUL 2 HOH *340(H2 O) SHEET 1 AA1 4 SER A 29 ASN A 32 0 SHEET 2 AA1 4 LEU A 38 SER A 44 -1 O PHE A 41 N SER A 29 SHEET 3 AA1 4 ALA A 48 TRP A 53 -1 O ASN A 52 N VAL A 40 SHEET 4 AA1 4 ASN A 67 VAL A 72 -1 O PHE A 69 N VAL A 49 SHEET 1 AA2 3 SER A 29 ASN A 32 0 SHEET 2 AA2 3 LEU A 38 SER A 44 -1 O PHE A 41 N SER A 29 SHEET 3 AA2 3 LEU A 362 ILE A 363 -1 O ILE A 363 N VAL A 43 SHEET 1 AA3 4 ALA A 78 ARG A 81 0 SHEET 2 AA3 4 LEU A 87 ARG A 92 -1 O PHE A 90 N ALA A 78 SHEET 3 AA3 4 LEU A 98 TRP A 102 -1 O ASN A 101 N VAL A 89 SHEET 4 AA3 4 GLN A 115 TYR A 118 -1 O LEU A 117 N LEU A 98 SHEET 1 AA4 4 GLU A 126 LEU A 129 0 SHEET 2 AA4 4 LEU A 135 ARG A 140 -1 O PHE A 138 N GLU A 126 SHEET 3 AA4 4 LEU A 146 TRP A 150 -1 O ILE A 149 N VAL A 137 SHEET 4 AA4 4 LYS A 163 GLY A 166 -1 O LEU A 165 N LEU A 146 SHEET 1 AA5 4 ALA A 174 LEU A 177 0 SHEET 2 AA5 4 ILE A 183 ARG A 188 -1 O PHE A 186 N ALA A 174 SHEET 3 AA5 4 ALA A 193 TRP A 198 -1 O ILE A 197 N VAL A 185 SHEET 4 AA5 4 GLN A 211 VAL A 216 -1 O LEU A 213 N LEU A 194 SHEET 1 AA6 4 VAL A 222 ASN A 225 0 SHEET 2 AA6 4 LEU A 231 ARG A 236 -1 O PHE A 234 N VAL A 222 SHEET 3 AA6 4 THR A 241 SER A 246 -1 O ARG A 243 N ALA A 235 SHEET 4 AA6 4 GLN A 259 VAL A 264 -1 O LEU A 261 N LEU A 242 SHEET 1 AA7 4 ALA A 270 LYS A 273 0 SHEET 2 AA7 4 LEU A 279 ARG A 284 -1 O PHE A 282 N ALA A 270 SHEET 3 AA7 4 THR A 289 TRP A 294 -1 O TRP A 291 N ALA A 283 SHEET 4 AA7 4 SER A 306 ILE A 311 -1 O SER A 306 N ARG A 292 SHEET 1 AA8 4 THR A 317 LYS A 320 0 SHEET 2 AA8 4 ILE A 326 LEU A 331 -1 O PHE A 329 N THR A 317 SHEET 3 AA8 4 LEU A 337 TRP A 341 -1 O TRP A 338 N VAL A 330 SHEET 4 AA8 4 ALA A 355 ILE A 357 -1 O ILE A 357 N LEU A 337 SSBOND 1 CYS A 227 CYS A 227 1555 2555 1.94 SSBOND 2 CYS A 260 CYS A 260 1555 3555 2.03 CRYST1 72.680 89.340 159.380 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013759 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006274 0.00000