HEADER LIGASE 18-DEC-20 7BBU TITLE CRYSTAL STRUCTURE OF HUMAN PROLYL-TRNA SYNTHETASE IN COMPLEX WITH TITLE 2 NCP26 AND L-PROLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BIFUNCTIONAL GLUTAMATE/PROLINE--TRNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BIFUNCTIONAL AMINOACYL-TRNA SYNTHETASE,CELL PROLIFERATION- COMPND 5 INDUCING GENE 32 PROTEIN,GLUTAMATYL-PROLYL-TRNA SYNTHETASE; COMPND 6 EC: 6.1.1.17,6.1.1.15; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EPRS1, EPRS, GLNS, PARS, QARS, QPRS, PIG32; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS INHIBITOR, LIGASE, PROTEIN BIOSYNTHESIS, ATP BINDING, TRNA EXPDTA X-RAY DIFFRACTION AUTHOR C.JOHANSSON,M.TYE,N.C.PAYNE,R.MAZITSCHEK,T.KROJER,U.C.T.OPPERMANN REVDAT 2 31-JAN-24 7BBU 1 REMARK REVDAT 1 12-JAN-22 7BBU 0 JRNL AUTH C.JOHANSSON,M.TYE,N.C.PAYNE,R.MAZITSCHEK,T.KROJER, JRNL AUTH 2 U.C.T.OPPERMANN JRNL TITL CRYSTAL STRUCTURE OF HUMAN PROLYL-TRNA SYNTHETASE IN COMPLEX JRNL TITL 2 WITH NCP26 AND L-PROLINE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.12-2829 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.95 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25046 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 61.9480 - 4.5549 1.00 2769 169 0.1781 0.1854 REMARK 3 2 4.5549 - 3.6154 1.00 2673 148 0.1629 0.2273 REMARK 3 3 3.6154 - 3.1584 1.00 2640 133 0.2011 0.2217 REMARK 3 4 3.1584 - 2.8697 1.00 2659 132 0.2159 0.2368 REMARK 3 5 2.8697 - 2.6640 1.00 2619 138 0.2519 0.2588 REMARK 3 6 2.6640 - 2.5069 1.00 2602 153 0.2542 0.3070 REMARK 3 7 2.5069 - 2.3814 1.00 2614 118 0.2718 0.3195 REMARK 3 8 2.3814 - 2.2777 1.00 2601 136 0.2939 0.3145 REMARK 3 9 2.2777 - 2.1900 1.00 2628 114 0.3161 0.3397 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 41.93 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.002 3918 REMARK 3 ANGLE : 0.471 5301 REMARK 3 CHIRALITY : 0.042 580 REMARK 3 PLANARITY : 0.003 693 REMARK 3 DIHEDRAL : 15.681 2335 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1012 THROUGH 1071 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9880 19.7086 -12.0880 REMARK 3 T TENSOR REMARK 3 T11: 0.3001 T22: 0.2985 REMARK 3 T33: 0.2706 T12: -0.0297 REMARK 3 T13: -0.0178 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 3.5915 L22: 3.2084 REMARK 3 L33: 1.9460 L12: -0.8521 REMARK 3 L13: -0.4328 L23: -0.4672 REMARK 3 S TENSOR REMARK 3 S11: -0.1002 S12: -0.0487 S13: -0.3243 REMARK 3 S21: -0.0596 S22: 0.0517 S23: -0.0967 REMARK 3 S31: 0.1865 S32: 0.1657 S33: 0.0275 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1072 THROUGH 1110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.6786 17.3743 -2.0284 REMARK 3 T TENSOR REMARK 3 T11: 0.3071 T22: 0.3654 REMARK 3 T33: 0.3391 T12: -0.0465 REMARK 3 T13: 0.0135 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 3.4432 L22: 7.2055 REMARK 3 L33: 1.4217 L12: 0.3749 REMARK 3 L13: -0.4346 L23: -0.4318 REMARK 3 S TENSOR REMARK 3 S11: -0.1145 S12: 0.0385 S13: -0.3597 REMARK 3 S21: -0.2534 S22: -0.0033 S23: 0.3167 REMARK 3 S31: 0.2451 S32: -0.2333 S33: 0.0848 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1111 THROUGH 1287 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4353 28.0369 -13.6440 REMARK 3 T TENSOR REMARK 3 T11: 0.3010 T22: 0.2801 REMARK 3 T33: 0.3495 T12: -0.0153 REMARK 3 T13: -0.0306 T23: -0.0284 REMARK 3 L TENSOR REMARK 3 L11: 2.8285 L22: 0.7738 REMARK 3 L33: 1.2739 L12: 0.1344 REMARK 3 L13: -0.3572 L23: -0.0918 REMARK 3 S TENSOR REMARK 3 S11: -0.0113 S12: 0.0715 S13: 0.0366 REMARK 3 S21: 0.0087 S22: 0.0068 S23: 0.1866 REMARK 3 S31: -0.0480 S32: -0.1149 S33: 0.0058 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1288 THROUGH 1336 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8634 32.2021 -8.2655 REMARK 3 T TENSOR REMARK 3 T11: 0.4314 T22: 0.3943 REMARK 3 T33: 0.4139 T12: -0.0547 REMARK 3 T13: -0.0383 T23: -0.0046 REMARK 3 L TENSOR REMARK 3 L11: 6.8307 L22: 3.1609 REMARK 3 L33: 8.0693 L12: 2.8505 REMARK 3 L13: 6.6771 L23: 2.8952 REMARK 3 S TENSOR REMARK 3 S11: -0.4700 S12: 0.3275 S13: 0.3610 REMARK 3 S21: 0.3232 S22: 0.2220 S23: -0.2144 REMARK 3 S31: -0.4258 S32: 0.5837 S33: 0.2183 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1337 THROUGH 1369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1812 26.5137 -9.2965 REMARK 3 T TENSOR REMARK 3 T11: 0.3050 T22: 0.3527 REMARK 3 T33: 0.2988 T12: 0.0334 REMARK 3 T13: -0.0108 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 6.7896 L22: 7.9155 REMARK 3 L33: 7.7145 L12: 1.1813 REMARK 3 L13: 3.3512 L23: 2.7487 REMARK 3 S TENSOR REMARK 3 S11: -0.2704 S12: -0.0543 S13: -0.0365 REMARK 3 S21: 0.0465 S22: 0.0058 S23: 0.0524 REMARK 3 S31: 0.1610 S32: 0.1342 S33: 0.2213 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1370 THROUGH 1396 ) REMARK 3 ORIGIN FOR THE GROUP (A): 49.6045 36.1012 -16.7780 REMARK 3 T TENSOR REMARK 3 T11: 0.5937 T22: 0.8791 REMARK 3 T33: 0.6859 T12: -0.1263 REMARK 3 T13: -0.1412 T23: 0.1701 REMARK 3 L TENSOR REMARK 3 L11: 7.9556 L22: 9.3019 REMARK 3 L33: 4.8852 L12: 2.7734 REMARK 3 L13: 0.0622 L23: 1.5340 REMARK 3 S TENSOR REMARK 3 S11: -0.2476 S12: 0.7379 S13: 0.7998 REMARK 3 S21: 0.2964 S22: 0.0643 S23: -1.1677 REMARK 3 S31: -0.7209 S32: 1.5324 S33: 0.2902 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1397 THROUGH 1462 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.1636 25.8234 -32.9133 REMARK 3 T TENSOR REMARK 3 T11: 0.3477 T22: 0.3810 REMARK 3 T33: 0.3490 T12: 0.0175 REMARK 3 T13: 0.0674 T23: 0.0110 REMARK 3 L TENSOR REMARK 3 L11: 9.6881 L22: 3.1361 REMARK 3 L33: 4.7732 L12: 3.7829 REMARK 3 L13: 5.7343 L23: 1.8311 REMARK 3 S TENSOR REMARK 3 S11: -0.1265 S12: 0.6010 S13: -0.0134 REMARK 3 S21: -0.1254 S22: 0.1177 S23: -0.1074 REMARK 3 S31: 0.0478 S32: 0.2108 S33: 0.0154 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1463 THROUGH 1512 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2962 24.5248 -37.1326 REMARK 3 T TENSOR REMARK 3 T11: 0.3192 T22: 0.4939 REMARK 3 T33: 0.3086 T12: 0.0296 REMARK 3 T13: -0.0393 T23: -0.0689 REMARK 3 L TENSOR REMARK 3 L11: 8.5201 L22: 6.9844 REMARK 3 L33: 8.6493 L12: 1.0046 REMARK 3 L13: 0.7273 L23: -0.5127 REMARK 3 S TENSOR REMARK 3 S11: 0.1163 S12: 0.5818 S13: -0.0789 REMARK 3 S21: -0.3909 S22: 0.1116 S23: 0.0382 REMARK 3 S31: -0.1991 S32: -0.2497 S33: -0.2392 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1801 THROUGH 1801 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.6409 25.2143 -13.1339 REMARK 3 T TENSOR REMARK 3 T11: 0.4641 T22: 0.6287 REMARK 3 T33: 0.7315 T12: 0.0902 REMARK 3 T13: -0.1073 T23: -0.1624 REMARK 3 L TENSOR REMARK 3 L11: 3.2249 L22: 9.9136 REMARK 3 L33: 4.0919 L12: 1.6185 REMARK 3 L13: -1.3300 L23: 5.0114 REMARK 3 S TENSOR REMARK 3 S11: -1.3929 S12: 2.7876 S13: 2.8407 REMARK 3 S21: -1.7262 S22: -3.0571 S23: 7.8407 REMARK 3 S31: -3.3366 S32: -6.8178 S33: 4.4784 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292113106. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAY-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97628 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.7.4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25083 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 61.950 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.10 REMARK 200 R MERGE (I) : 0.32900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.25 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 18.30 REMARK 200 R MERGE FOR SHELL (I) : 4.01400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4K86 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.2 M NH4NO3, 5 MM L-PRO, REMARK 280 2MM NCP26, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.40000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.20000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.20000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 72.40000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A1815 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 998 REMARK 465 MET A 999 REMARK 465 SER A 1000 REMARK 465 GLY A 1001 REMARK 465 ALA A 1002 REMARK 465 GLY A 1003 REMARK 465 GLU A 1004 REMARK 465 GLY A 1005 REMARK 465 GLN A 1006 REMARK 465 GLY A 1007 REMARK 465 PRO A 1008 REMARK 465 LYS A 1009 REMARK 465 LYS A 1010 REMARK 465 GLN A 1011 REMARK 465 LYS A 1091 REMARK 465 THR A 1092 REMARK 465 HIS A 1093 REMARK 465 VAL A 1094 REMARK 465 ALA A 1095 REMARK 465 ASP A 1096 REMARK 465 PHE A 1097 REMARK 465 ILE A 1311 REMARK 465 THR A 1312 REMARK 465 ASN A 1313 REMARK 465 ALA A 1314 REMARK 465 LEU A 1315 REMARK 465 ASP A 1464 REMARK 465 GLN A 1465 REMARK 465 ASP A 1466 REMARK 465 LEU A 1467 REMARK 465 GLU A 1468 REMARK 465 PRO A 1469 REMARK 465 GLY A 1470 REMARK 465 ALA A 1471 REMARK 465 PRO A 1472 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1017 CG CD OE1 OE2 REMARK 470 LYS A1019 CE NZ REMARK 470 GLU A1021 CG CD OE1 OE2 REMARK 470 LYS A1061 NZ REMARK 470 LYS A1070 CE NZ REMARK 470 LYS A1089 NZ REMARK 470 LYS A1109 CG CD CE NZ REMARK 470 ARG A1138 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1156 CE NZ REMARK 470 GLN A1159 OE1 NE2 REMARK 470 GLU A1257 CD OE1 OE2 REMARK 470 LYS A1260 CG CD CE NZ REMARK 470 ILE A1261 CG1 CG2 CD1 REMARK 470 GLU A1264 CG CD OE1 OE2 REMARK 470 GLU A1317 CD OE1 OE2 REMARK 470 ASP A1319 CG OD1 OD2 REMARK 470 LYS A1320 CG CD CE NZ REMARK 470 LEU A1323 CD1 CD2 REMARK 470 ILE A1324 CD1 REMARK 470 ASP A1347 OD1 OD2 REMARK 470 ARG A1372 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1375 CG CD CE NZ REMARK 470 LYS A1389 CE NZ REMARK 470 LYS A1400 CD CE NZ REMARK 470 LYS A1421 CE NZ REMARK 470 GLU A1431 CG CD OE1 OE2 REMARK 470 LYS A1435 CD CE NZ REMARK 470 LYS A1441 CE NZ REMARK 470 LYS A1459 CD CE NZ REMARK 470 LYS A1477 CE NZ REMARK 470 LYS A1484 CD CE NZ REMARK 470 LYS A1494 CG CD CE NZ REMARK 470 LYS A1499 CG CD CE NZ REMARK 470 LYS A1503 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 1454 O HOH A 1901 2.14 REMARK 500 OE2 GLU A 1154 O HOH A 1902 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A1161 -56.46 67.96 REMARK 500 ASP A1289 -168.50 -121.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1809 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1448 SG REMARK 620 2 CYS A1453 SG 105.9 REMARK 620 3 CYS A1495 SG 111.2 102.2 REMARK 620 4 CYS A1497 SG 131.7 101.1 101.0 REMARK 620 N 1 2 3 DBREF 7BBU A 1000 1512 UNP P07814 SYEP_HUMAN 1000 1512 SEQADV 7BBU SER A 998 UNP P07814 EXPRESSION TAG SEQADV 7BBU MET A 999 UNP P07814 EXPRESSION TAG SEQRES 1 A 515 SER MET SER GLY ALA GLY GLU GLY GLN GLY PRO LYS LYS SEQRES 2 A 515 GLN THR ARG LEU GLY LEU GLU ALA LYS LYS GLU GLU ASN SEQRES 3 A 515 LEU ALA ASP TRP TYR SER GLN VAL ILE THR LYS SER GLU SEQRES 4 A 515 MET ILE GLU TYR HIS ASP ILE SER GLY CYS TYR ILE LEU SEQRES 5 A 515 ARG PRO TRP ALA TYR ALA ILE TRP GLU ALA ILE LYS ASP SEQRES 6 A 515 PHE PHE ASP ALA GLU ILE LYS LYS LEU GLY VAL GLU ASN SEQRES 7 A 515 CYS TYR PHE PRO MET PHE VAL SER GLN SER ALA LEU GLU SEQRES 8 A 515 LYS GLU LYS THR HIS VAL ALA ASP PHE ALA PRO GLU VAL SEQRES 9 A 515 ALA TRP VAL THR ARG SER GLY LYS THR GLU LEU ALA GLU SEQRES 10 A 515 PRO ILE ALA ILE ARG PRO THR SER GLU THR VAL MET TYR SEQRES 11 A 515 PRO ALA TYR ALA LYS TRP VAL GLN SER HIS ARG ASP LEU SEQRES 12 A 515 PRO ILE LYS LEU ASN GLN TRP CYS ASN VAL VAL ARG TRP SEQRES 13 A 515 GLU PHE LYS HIS PRO GLN PRO PHE LEU ARG THR ARG GLU SEQRES 14 A 515 PHE LEU TRP GLN GLU GLY HIS SER ALA PHE ALA THR MET SEQRES 15 A 515 GLU GLU ALA ALA GLU GLU VAL LEU GLN ILE LEU ASP LEU SEQRES 16 A 515 TYR ALA GLN VAL TYR GLU GLU LEU LEU ALA ILE PRO VAL SEQRES 17 A 515 VAL LYS GLY ARG LYS THR GLU LYS GLU LYS PHE ALA GLY SEQRES 18 A 515 GLY ASP TYR THR THR THR ILE GLU ALA PHE ILE SER ALA SEQRES 19 A 515 SER GLY ARG ALA ILE GLN GLY GLY THR SER HIS HIS LEU SEQRES 20 A 515 GLY GLN ASN PHE SER LYS MET PHE GLU ILE VAL PHE GLU SEQRES 21 A 515 ASP PRO LYS ILE PRO GLY GLU LYS GLN PHE ALA TYR GLN SEQRES 22 A 515 ASN SER TRP GLY LEU THR THR ARG THR ILE GLY VAL MET SEQRES 23 A 515 THR MET VAL HIS GLY ASP ASN MET GLY LEU VAL LEU PRO SEQRES 24 A 515 PRO ARG VAL ALA CYS VAL GLN VAL VAL ILE ILE PRO CYS SEQRES 25 A 515 GLY ILE THR ASN ALA LEU SER GLU GLU ASP LYS GLU ALA SEQRES 26 A 515 LEU ILE ALA LYS CYS ASN ASP TYR ARG ARG ARG LEU LEU SEQRES 27 A 515 SER VAL ASN ILE ARG VAL ARG ALA ASP LEU ARG ASP ASN SEQRES 28 A 515 TYR SER PRO GLY TRP LYS PHE ASN HIS TRP GLU LEU LYS SEQRES 29 A 515 GLY VAL PRO ILE ARG LEU GLU VAL GLY PRO ARG ASP MET SEQRES 30 A 515 LYS SER CYS GLN PHE VAL ALA VAL ARG ARG ASP THR GLY SEQRES 31 A 515 GLU LYS LEU THR VAL ALA GLU ASN GLU ALA GLU THR LYS SEQRES 32 A 515 LEU GLN ALA ILE LEU GLU ASP ILE GLN VAL THR LEU PHE SEQRES 33 A 515 THR ARG ALA SER GLU ASP LEU LYS THR HIS MET VAL VAL SEQRES 34 A 515 ALA ASN THR MET GLU ASP PHE GLN LYS ILE LEU ASP SER SEQRES 35 A 515 GLY LYS ILE VAL GLN ILE PRO PHE CYS GLY GLU ILE ASP SEQRES 36 A 515 CYS GLU ASP TRP ILE LYS LYS THR THR ALA ARG ASP GLN SEQRES 37 A 515 ASP LEU GLU PRO GLY ALA PRO SER MET GLY ALA LYS SER SEQRES 38 A 515 LEU CYS ILE PRO PHE LYS PRO LEU CYS GLU LEU GLN PRO SEQRES 39 A 515 GLY ALA LYS CYS VAL CYS GLY LYS ASN PRO ALA LYS TYR SEQRES 40 A 515 TYR THR LEU PHE GLY ARG SER TYR HET PRO A1801 8 HET MU5 A1802 27 HET EDO A1803 4 HET EDO A1804 4 HET EDO A1805 4 HET EDO A1806 4 HET NO3 A1807 4 HET EDO A1808 4 HET ZN A1809 1 HET EDO A1810 4 HET EDO A1811 4 HET EDO A1812 4 HET EDO A1813 4 HET EDO A1814 4 HET CL A1815 1 HETNAM PRO PROLINE HETNAM MU5 ~{N}-(2,3-DIHYDRO-1~{H}-INDEN-2-YL)-3-(PIPERIDIN-1- HETNAM 2 MU5 YLCARBONYLAMINO)PYRAZINE-2-CARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM NO3 NITRATE ION HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 PRO C5 H9 N O2 FORMUL 3 MU5 C20 H23 N5 O2 FORMUL 4 EDO 10(C2 H6 O2) FORMUL 8 NO3 N O3 1- FORMUL 10 ZN ZN 2+ FORMUL 16 CL CL 1- FORMUL 17 HOH *125(H2 O) HELIX 1 AA1 ASN A 1023 SER A 1035 1 13 HELIX 2 AA2 ARG A 1050 LYS A 1070 1 21 HELIX 3 AA3 SER A 1083 LYS A 1089 1 7 HELIX 4 AA4 SER A 1122 VAL A 1134 1 13 HELIX 5 AA5 SER A 1136 LEU A 1140 5 5 HELIX 6 AA6 THR A 1178 LEU A 1200 1 23 HELIX 7 AA7 GLN A 1246 GLU A 1253 1 8 HELIX 8 AA8 THR A 1277 GLY A 1288 1 12 HELIX 9 AA9 GLU A 1317 VAL A 1337 1 21 HELIX 10 AB1 SER A 1350 GLY A 1362 1 13 HELIX 11 AB2 GLY A 1370 SER A 1376 1 7 HELIX 12 AB3 GLU A 1396 HIS A 1423 1 28 HELIX 13 AB4 THR A 1429 SER A 1439 1 11 HELIX 14 AB5 GLU A 1450 ARG A 1463 1 14 SHEET 1 AA1 2 ILE A1038 TYR A1040 0 SHEET 2 AA1 2 TYR A1047 LEU A1049 -1 O ILE A1048 N GLU A1039 SHEET 1 AA211 GLU A1074 ASN A1075 0 SHEET 2 AA211 ILE A1142 VAL A1151 1 O LYS A1143 N GLU A1074 SHEET 3 AA211 GLU A1166 PHE A1176 -1 O HIS A1173 N LEU A1144 SHEET 4 AA211 TYR A1269 THR A1276 -1 O TYR A1269 N PHE A1176 SHEET 5 AA211 ARG A1234 GLY A1245 -1 N HIS A1242 O SER A1272 SHEET 6 AA211 TYR A1221 ILE A1229 -1 N ALA A1227 O ILE A1236 SHEET 7 AA211 VAL A1206 ARG A1209 -1 N GLY A1208 O THR A1224 SHEET 8 AA211 LYS A1477 PRO A1482 -1 O ILE A1481 N ARG A1209 SHEET 9 AA211 TYR A1504 GLY A1509 -1 O LEU A1507 N LEU A1479 SHEET 10 AA211 ILE A1442 PHE A1447 -1 N VAL A1443 O PHE A1508 SHEET 11 AA211 MET A1424 VAL A1426 1 N VAL A1425 O GLN A1444 SHEET 1 AA3 3 PHE A1081 VAL A1082 0 SHEET 2 AA3 3 THR A1110 ILE A1118 -1 O ALA A1117 N VAL A1082 SHEET 3 AA3 3 TRP A1103 SER A1107 -1 N VAL A1104 O ILE A1116 SHEET 1 AA4 2 VAL A1255 GLU A1257 0 SHEET 2 AA4 2 LYS A1265 PHE A1267 -1 O GLN A1266 N PHE A1256 SHEET 1 AA5 5 VAL A1341 ALA A1343 0 SHEET 2 AA5 5 VAL A1304 PRO A1308 1 N ILE A1306 O ARG A1342 SHEET 3 AA5 5 ILE A1365 VAL A1369 1 O LEU A1367 N ILE A1307 SHEET 4 AA5 5 GLN A1378 ARG A1383 -1 O VAL A1380 N GLU A1368 SHEET 5 AA5 5 LYS A1389 ALA A1393 -1 O LEU A1390 N ALA A1381 LINK SG CYS A1448 ZN ZN A1809 1555 1555 2.45 LINK SG CYS A1453 ZN ZN A1809 1555 1555 2.51 LINK SG CYS A1495 ZN ZN A1809 1555 1555 2.49 LINK SG CYS A1497 ZN ZN A1809 1555 1555 2.44 CISPEP 1 LEU A 1140 PRO A 1141 0 1.98 CRYST1 87.090 87.090 108.600 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011482 0.006629 0.000000 0.00000 SCALE2 0.000000 0.013259 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009208 0.00000