HEADER OXIDOREDUCTASE 18-DEC-20 7BBY TITLE CRYSTAL STRUCTURE OF ALDO-KETO REDUCTASE WITH C-TERMINAL HIS TAG FROM TITLE 2 AGROBACTERIUM TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARYL-ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM FABRUM (STRAIN C58 / ATCC 33970); SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58 / ATCC 33970; SOURCE 5 GENE: ATU3278; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS ALDO-KETO REDUCTASE, HISTIDINE, SULFOQUINOVOSE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SNOW,M.SHARMA,G.J.DAVIES REVDAT 3 31-JAN-24 7BBY 1 REMARK REVDAT 2 20-APR-22 7BBY 1 JRNL REVDAT 1 12-JAN-22 7BBY 0 JRNL AUTH M.SHARMA,J.P.LINGFORD,M.PETRICEVIC,A.J.D.SNOW,Y.ZHANG, JRNL AUTH 2 M.A.JARVA,J.W.MUI,N.E.SCOTT,E.C.SAUNDERS,R.MAO,R.EPA, JRNL AUTH 3 B.M.DA SILVA,D.E.V.PIRES,D.B.ASCHER,M.J.MCCONVILLE, JRNL AUTH 4 G.J.DAVIES,S.J.WILLIAMS,E.D.GODDARD-BORGER JRNL TITL OXIDATIVE DESULFURIZATION PATHWAY FOR COMPLETE CATABOLISM OF JRNL TITL 2 SULFOQUINOVOSE BY BACTERIA. JRNL REF PROC.NATL.ACAD.SCI.USA V. 119 2022 JRNL REFN ESSN 1091-6490 JRNL PMID 35074914 JRNL DOI 10.1073/PNAS.2116022119 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 36384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1822 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2691 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3050 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3270 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2234 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 180 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.107 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.100 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.080 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.750 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2281 ; 0.012 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2171 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3097 ; 1.683 ; 1.630 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4974 ; 1.492 ; 1.575 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 297 ; 5.867 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;31.419 ;21.509 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 371 ;13.816 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;17.680 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 312 ; 0.082 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2584 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 500 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 7BBY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292108236. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DIALS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38236 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.830 REMARK 200 RESOLUTION RANGE LOW (A) : 44.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 24.50 REMARK 200 R MERGE (I) : 0.18900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.83 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.87 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 24.90 REMARK 200 R MERGE FOR SHELL (I) : 4.19600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4R9O REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.29 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.056 M SODIUM PHOSPHATE REMARK 280 MONOBASIC/MONOHYDRATE 1.344 M POTASSIUM PHOSPHATE DIBASIC REMARK 280 PROTEIN AT 20MG/ML, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 54.46400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.46400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.46400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.46400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.46400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.46400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 54.46400 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 54.46400 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 54.46400 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 54.46400 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 54.46400 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 54.46400 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 54.46400 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 54.46400 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 54.46400 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 54.46400 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 54.46400 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 54.46400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 659 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 678 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 679 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 680 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 221 REMARK 465 ALA A 222 REMARK 465 TYR A 223 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 8 CG OD1 OD2 REMARK 470 LYS A 9 CE NZ REMARK 470 ASP A 75 OD2 REMARK 470 LYS A 76 CE NZ REMARK 470 GLU A 138 OE1 OE2 REMARK 470 LYS A 154 CD CE NZ REMARK 470 SER A 217 OG REMARK 470 LEU A 218 CD1 CD2 REMARK 470 LYS A 235 NZ REMARK 470 LYS A 255 CE NZ REMARK 470 LEU A 260 CG CD1 CD2 REMARK 470 LEU A 265 CD1 REMARK 470 ARG A 269 NE CZ NH1 NH2 REMARK 470 LYS A 294 CE NZ REMARK 470 GLU A 295 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 57 41.31 71.16 REMARK 500 LYS A 255 64.95 63.63 REMARK 500 LEU A 298 -150.45 -96.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 678 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH A 679 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A 680 DISTANCE = 6.84 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 DBREF 7BBY A 1 297 UNP A9CEY6 A9CEY6_AGRFC 1 297 SEQADV 7BBY LEU A 298 UNP A9CEY6 EXPRESSION TAG SEQADV 7BBY GLU A 299 UNP A9CEY6 EXPRESSION TAG SEQADV 7BBY HIS A 300 UNP A9CEY6 EXPRESSION TAG SEQADV 7BBY HIS A 301 UNP A9CEY6 EXPRESSION TAG SEQADV 7BBY HIS A 302 UNP A9CEY6 EXPRESSION TAG SEQADV 7BBY HIS A 303 UNP A9CEY6 EXPRESSION TAG SEQADV 7BBY HIS A 304 UNP A9CEY6 EXPRESSION TAG SEQADV 7BBY HIS A 305 UNP A9CEY6 EXPRESSION TAG SEQRES 1 A 305 MET GLN ARG ILE ALA LEU SER ASP LYS LEU GLU LEU SER SEQRES 2 A 305 ARG ILE VAL TYR GLY MET TRP ARG ILE GLY ASP ASP ALA SEQRES 3 A 305 ASP THR SER PRO ALA HIS VAL GLN ALA LYS ILE GLU ALA SEQRES 4 A 305 CYS LEU ALA GLN GLY ILE THR THR MET ASP GLN ALA ASP SEQRES 5 A 305 ILE TYR GLY GLY TYR THR ALA GLU ALA ILE LEU GLY GLY SEQRES 6 A 305 GLY LEU LYS ALA ALA PRO GLY LEU ARG ASP LYS ILE GLU SEQRES 7 A 305 ILE VAL THR LYS CYS GLY ILE VAL ALA PRO ALA GLY ARG SEQRES 8 A 305 HIS SER SER ALA ARG VAL LYS HIS TYR ASP THR THR ALA SEQRES 9 A 305 GLY HIS ILE ASN VAL SER VAL GLU ALA SER LEU ARG ASP SEQRES 10 A 305 MET GLY THR ASP HIS VAL ASP LEU LEU LEU ILE HIS ARG SEQRES 11 A 305 PRO ASP PRO LEU ILE ASP ALA GLU GLU THR GLY LYS ALA SEQRES 12 A 305 LEU ASP ALA LEU VAL ALA SER GLY LYS VAL LYS ALA VAL SEQRES 13 A 305 GLY VAL SER ASN PHE ARG PRO TRP ASP PHE SER LEU LEU SEQRES 14 A 305 GLN SER ALA MET SER ASN ARG LEU VAL THR ASN GLN ILE SEQRES 15 A 305 GLU MET SER LEU LEU ALA THR ASP THR PHE THR ASN GLY SEQRES 16 A 305 ASP LEU ALA TYR LEU GLN GLU LYS ARG VAL SER PRO MET SEQRES 17 A 305 ALA TRP SER PRO LEU GLY GLY GLY SER LEU PHE SER GLY SEQRES 18 A 305 ALA TYR GLY GLY THR MET ALA ALA LEU GLN ARG ILE GLY SEQRES 19 A 305 LYS GLU GLN GLY VAL ASP ALA THR ALA VAL ALA ILE ALA SEQRES 20 A 305 TRP LEU LEU ARG HIS PRO ALA LYS ILE VAL PRO VAL LEU SEQRES 21 A 305 GLY THR ASN ASN LEU GLU ARG ILE ARG THR ALA ALA ASP SEQRES 22 A 305 ALA LEU ARG VAL THR MET ASP ARG GLN THR TRP PHE GLU SEQRES 23 A 305 LEU TYR THR LEU ALA ILE GLY LYS GLU VAL ALA LEU GLU SEQRES 24 A 305 HIS HIS HIS HIS HIS HIS HET PO4 A 401 5 HET PO4 A 402 5 HETNAM PO4 PHOSPHATE ION FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 HOH *180(H2 O) HELIX 1 AA1 SER A 29 GLN A 43 1 15 HELIX 2 AA2 ILE A 53 THR A 58 1 6 HELIX 3 AA3 THR A 58 ALA A 69 1 12 HELIX 4 AA4 LEU A 73 ILE A 77 5 5 HELIX 5 AA5 ALA A 89 SER A 93 5 5 HELIX 6 AA6 THR A 103 GLY A 119 1 17 HELIX 7 AA7 ASP A 136 SER A 150 1 15 HELIX 8 AA8 ARG A 162 ALA A 172 1 11 HELIX 9 AA9 THR A 189 THR A 193 5 5 HELIX 10 AB1 GLY A 195 ARG A 204 1 10 HELIX 11 AB2 GLY A 225 GLY A 238 1 14 HELIX 12 AB3 ASP A 240 ARG A 251 1 12 HELIX 13 AB4 ASN A 264 ALA A 271 1 8 HELIX 14 AB5 ALA A 272 VAL A 277 5 6 HELIX 15 AB6 ASP A 280 GLY A 293 1 14 SHEET 1 AA1 2 ARG A 3 SER A 7 0 SHEET 2 AA1 2 LEU A 10 SER A 13 -1 O LEU A 12 N ILE A 4 SHEET 1 AA2 9 VAL A 16 GLY A 18 0 SHEET 2 AA2 9 THR A 47 ASP A 49 1 O THR A 47 N TYR A 17 SHEET 3 AA2 9 GLU A 78 CYS A 83 1 O VAL A 80 N MET A 48 SHEET 4 AA2 9 LEU A 125 ILE A 128 1 O LEU A 125 N THR A 81 SHEET 5 AA2 9 VAL A 156 SER A 159 1 O GLY A 157 N LEU A 126 SHEET 6 AA2 9 THR A 179 GLU A 183 1 O GLN A 181 N VAL A 158 SHEET 7 AA2 9 SER A 206 TRP A 210 1 O MET A 208 N ILE A 182 SHEET 8 AA2 9 VAL A 257 LEU A 260 1 O VAL A 259 N ALA A 209 SHEET 9 AA2 9 VAL A 16 GLY A 18 1 N VAL A 16 O LEU A 260 SHEET 1 AA3 2 ILE A 85 VAL A 86 0 SHEET 2 AA3 2 HIS A 99 TYR A 100 -1 O HIS A 99 N VAL A 86 SITE 1 AC1 2 ARG A 162 HOH A 507 SITE 1 AC2 3 THR A 120 ASP A 121 HIS A 122 CRYST1 108.928 108.928 108.928 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009180 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009180 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009180 0.00000