HEADER VIRUS 18-DEC-20 7BC3 TITLE NATIVE VIRION OF KASHMIR BEE VIRUS AT ACIDIC PH COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRUCTURAL POLYPROTEIN; COMPND 3 CHAIN: D; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: STRUCTURAL POLYPROTEIN; COMPND 6 CHAIN: A; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: STRUCTURAL POLYPROTEIN; COMPND 9 CHAIN: C; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: STRUCTURAL POLYPROTEIN; COMPND 12 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KASHMIR BEE VIRUS; SOURCE 3 ORGANISM_TAXID: 68876; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: KASHMIR BEE VIRUS; SOURCE 6 ORGANISM_TAXID: 68876; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: KASHMIR BEE VIRUS; SOURCE 9 ORGANISM_TAXID: 68876; SOURCE 10 MOL_ID: 4; SOURCE 11 ORGANISM_SCIENTIFIC: KASHMIR BEE VIRUS; SOURCE 12 ORGANISM_TAXID: 68876 KEYWDS VIRUSES, RIBOVIRIA, ORTHORNAVIRAE, PISUVIRICOTA, PISONIVIRICETES, KEYWDS 2 PICORNAVIRALES, DICISTROVIRIDAE, APARAVIRUS, KASHMIR BEE VIRUS, KEYWDS 3 VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR L.MUKHAMEDOVA,P.PLEVKA,T.FUZIK,D.HREBIK,J.NOVACEK REVDAT 3 30-NOV-22 7BC3 1 JRNL REVDAT 2 17-MAR-21 7BC3 1 JRNL REVDAT 1 03-MAR-21 7BC3 0 JRNL AUTH L.MUKHAMEDOVA,T.FUZIK,J.NOVACEK,D.HREBIK,A.PRIDAL,G.A.MARTI, JRNL AUTH 2 D.M.A.GUERIN,P.PLEVKA JRNL TITL VIRION STRUCTURE AND IN VITRO GENOME RELEASE MECHANISM OF JRNL TITL 2 DICISTROVIRUS KASHMIR BEE VIRUS. JRNL REF J.VIROL. V. 95 2021 JRNL REFN ESSN 1098-5514 JRNL PMID 33658338 JRNL DOI 10.1128/JVI.01950-20 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, GCTF, PHENIX, RELION, REMARK 3 RELION, RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : EXACT BACK PROJECTION REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 5CDC REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : CROSS- CORRELATION REMARK 3 OVERALL ANISOTROPIC B VALUE : 26.880 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 2.900 REMARK 3 NUMBER OF PARTICLES : 67748 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7BC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 18-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292111269. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : TISSUE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : KASHMIR BEE VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 8193 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 9400.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 240-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 2 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 2 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 4 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 5 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 5 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 6 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 7 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 7 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 8 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 8 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 9 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 10 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 10 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 10 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 12 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 13 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 13 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 13 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 14 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 14 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 14 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 15 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 15 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 15 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 16 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 16 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 16 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 17 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 17 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 18 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 18 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 19 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 19 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 19 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 20 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 20 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 20 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 21 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 21 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 22 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 22 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 22 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 23 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 24 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 24 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 25 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 25 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 25 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 26 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 26 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 26 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 27 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 27 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 28 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 28 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 29 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 29 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 30 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 30 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 32 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 32 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 32 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 33 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 33 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 33 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 34 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 34 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 35 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 36 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 36 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 37 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 37 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 38 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 38 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 38 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 39 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 39 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 42 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 42 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 43 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 44 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 44 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 44 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 45 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 45 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 47 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 47 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 49 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 50 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 50 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 50 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 51 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 51 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 51 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 52 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 52 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 53 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 53 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 53 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 55 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 56 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 56 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 57 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 59 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 59 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 60 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 60 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 60 0.500000 -0.309017 0.809017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 107 REMARK 465 GLU B 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 183 CB LEU B 186 1.80 REMARK 500 O THR B 108 OG1 THR B 112 2.05 REMARK 500 OG SER C 129 O LYS C 271 2.06 REMARK 500 OE2 GLU C 152 OG SER C 183 2.10 REMARK 500 O PHE C 128 OG1 THR C 214 2.11 REMARK 500 O ASP A 71 OG SER A 79 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS D 30 CD - CE - NZ ANGL. DEV. = -20.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS D 47 52.80 -140.08 REMARK 500 CYS A 32 -50.29 -123.13 REMARK 500 ASP A 127 -167.91 -79.44 REMARK 500 ASN A 185 -176.36 -69.09 REMARK 500 PRO C 3 -175.88 -68.67 REMARK 500 ASP C 45 36.29 71.47 REMARK 500 VAL C 46 -62.23 -105.74 REMARK 500 VAL C 268 -63.88 -107.33 REMARK 500 GLU B 29 78.62 -119.99 REMARK 500 GLN B 30 -21.39 69.53 REMARK 500 ILE B 31 -51.00 -139.27 REMARK 500 VAL B 249 -55.69 -125.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-12137 RELATED DB: EMDB REMARK 900 NATIVE PARTICLE OF KASHMIR BEE VIRUS AT ACIDIC PH REMARK 900 RELATED ID: EMD-12182 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-12173 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-12154 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-12155 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-12167 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-12168 RELATED DB: EMDB DBREF 7BC3 D 12 69 UNP Q80AG2 Q80AG2_9VIRU 323 380 DBREF 7BC3 A 1 208 UNP Q6SQI6 Q6SQI6_9VIRU 558 765 DBREF 7BC3 C 1 290 UNP Q80AG2 Q80AG2_9VIRU 381 671 DBREF 7BC3 B 11 259 UNP Q80AG2 Q80AG2_9VIRU 10 258 SEQADV 7BC3 LEU C 12 UNP Q80AG2 TYR 392 CONFLICT SEQADV 7BC3 C UNP Q80AG2 SER 492 DELETION SEQADV 7BC3 LEU B 137 UNP Q80AG2 ILE 136 CONFLICT SEQRES 1 D 58 PRO THR SER GLU ASN PRO LYS ILE GLY PRO ILE SER GLU SEQRES 2 D 58 VAL ALA SER GLY VAL LYS THR ALA ALA ASN GLY ILE GLU SEQRES 3 D 58 ARG ILE PRO VAL LEU GLY GLU ILE ALA LYS PRO VAL THR SEQRES 4 D 58 ALA ALA VAL LYS TRP PHE ALA ASP ILE VAL GLY GLY VAL SEQRES 5 D 58 ALA ALA ILE PHE GLY TRP SEQRES 1 A 208 ILE ASN LEU SER ASN LYS THR ASP GLU ASN THR ILE SER SEQRES 2 A 208 PHE PHE ASP SER GLY ASP PRO GLU ARG MET ASN SER GLU SEQRES 3 A 208 ALA LEU MET ARG GLY CYS GLY GLU GLN ILE VAL ASN LEU SEQRES 4 A 208 ARG PRO LEU LEU ARG THR PHE ARG THR ILE ASN ASP ASN SEQRES 5 A 208 TRP SER LEU ALA ALA ASN THR LYS THR PRO ILE THR ASP SEQRES 6 A 208 LEU THR ASN THR ALA ASP ALA GLU GLY ARG ASP TYR MET SEQRES 7 A 208 SER TYR LEU SER PHE LEU TYR ARG PHE TYR ARG GLY GLY SEQRES 8 A 208 ARG ARG TYR LYS PHE PHE ASN THR THR PRO LEU LYS GLN SEQRES 9 A 208 SER GLN THR CYS TYR VAL ARG SER PHE LEU ILE PRO ARG SEQRES 10 A 208 ASN TYR THR ALA ASP GLU ILE ASN THR ASP GLY PRO SER SEQRES 11 A 208 HIS ILE THR TYR PRO VAL ILE ASN PRO VAL HIS GLU VAL SEQRES 12 A 208 GLU VAL PRO PHE TYR SER GLN TYR ARG LYS ILE PRO ILE SEQRES 13 A 208 ALA SER THR THR ASP LYS GLY TYR ASP SER SER LEU MET SEQRES 14 A 208 TYR TYR THR ASN VAL GLY THR GLN GLN ILE VAL ALA ARG SEQRES 15 A 208 ALA GLY ASN ASP ASP PHE THR PHE GLY TRP MET ILE GLY SEQRES 16 A 208 THR PRO GLN LEU GLN GLY ILE THR LYS GLU VAL ALA ASN SEQRES 1 C 290 SER LYS PRO ARG ASN GLN ASN GLN VAL MET PRO LEU GLN SEQRES 2 C 290 ASN VAL PRO GLY TRP GLY TYR SER LEU TYR LYS GLY ILE SEQRES 3 C 290 ASP MET SER VAL PRO LEU ALA TYR ASP PRO ASN ASN GLU SEQRES 4 C 290 LEU GLY ASP LEU ARG ASP VAL PHE PRO SER ALA VAL ASP SEQRES 5 C 290 GLU MET ALA ILE GLY TYR VAL CYS GLY ASN PRO ALA ILE SEQRES 6 C 290 LYS HIS VAL LEU THR TRP SER THR THR ASP VAL VAL GLN SEQRES 7 C 290 ASN PRO ILE SER ASN GLY ASP ASP TRP GLY GLY VAL ILE SEQRES 8 C 290 PRO VAL GLY MET PRO CYS TYR SER LYS THR ILE ARG ALA SEQRES 9 C 290 VAL LYS GLY ALA THR SER THR LYS THR GLU VAL MET ASP SEQRES 10 C 290 PRO ALA PRO CYS GLU TYR VAL ALA ASN LEU PHE SER TYR SEQRES 11 C 290 TRP ARG ALA THR MET CYS TYR ARG ILE THR VAL VAL LYS SEQRES 12 C 290 THR ALA PHE HIS THR GLY ARG LEU GLU ILE PHE PHE GLU SEQRES 13 C 290 PRO GLY SER ILE PRO THR VAL ARG THR ALA ASP ASN LEU SEQRES 14 C 290 GLY PRO ASP GLN THR GLN LEU ASN GLY THR ILE ALA PRO SEQRES 15 C 290 SER ASP ASN ASN TYR LYS TYR ILE LEU ASP LEU THR ASN SEQRES 16 C 290 ASP THR GLU VAL THR ILE LYS VAL PRO TYR VAL SER ASN SEQRES 17 C 290 LYS MET PHE MET LYS THR VAL GLY ILE TYR GLY ALA HIS SEQRES 18 C 290 ASP GLU ASP ASN TRP ASN PHE ASP GLU SER PHE THR GLY SEQRES 19 C 290 PHE LEU CYS ILE ARG PRO ILE THR LYS LEU MET ALA PRO SEQRES 20 C 290 ASP THR VAL SER GLN LYS VAL SER ILE VAL VAL TRP LYS SEQRES 21 C 290 TRP ALA GLU ASP VAL VAL VAL VAL GLU PRO LYS PRO LEU SEQRES 22 C 290 THR SER GLY PRO THR GLN VAL TYR ASN PRO PRO ALA VAL SEQRES 23 C 290 ALA ARG ASP LEU SEQRES 1 B 249 ASN VAL HIS ASN THR LYS LEU ALA SER THR SER ALA GLU SEQRES 2 B 249 ASN ALA ILE GLU LYS GLU GLN ILE THR THR PHE HIS ASP SEQRES 3 B 249 VAL GLU THR PRO ASN ARG ILE ASP THR PRO MET ALA GLN SEQRES 4 B 249 ASP THR SER SER ALA ARG SER MET ASP ASP THR HIS SER SEQRES 5 B 249 ILE ILE GLN PHE LEU GLN ARG PRO VAL LEU ILE ASP ASN SEQRES 6 B 249 ILE GLU ILE VAL ALA GLY THR THR ALA ASP ASN ASN THR SEQRES 7 B 249 ALA LEU SER ARG TYR VAL LEU ASP ARG THR ASN PRO GLN SEQRES 8 B 249 LYS TYR ILE LYS GLN TRP THR LEU PRO SER THR VAL LEU SEQRES 9 B 249 LYS ALA GLY GLY LYS ALA GLN LYS LEU ALA ASN PHE LYS SEQRES 10 B 249 TYR LEU ARG CYS ASP VAL GLN VAL LYS LEU VAL LEU ASN SEQRES 11 B 249 ALA ASN PRO PHE ILE ALA GLY ARG LEU TYR LEU ALA TYR SEQRES 12 B 249 SER PRO TYR ASP ASP LYS VAL ALA PRO GLU ARG ARG ILE SEQRES 13 B 249 ILE TYR THR SER ARG ALA GLY VAL THR GLY TYR PRO GLY SEQRES 14 B 249 VAL GLU LEU ASP PHE GLN LEU ASP ASN SER VAL GLU MET SEQRES 15 B 249 THR ILE PRO TYR ALA SER PHE GLN GLU ALA TYR ASP LEU SEQRES 16 B 249 VAL SER GLY ASN GLU ASP PHE VAL GLN LEU TYR LEU PHE SEQRES 17 B 249 THR ILE ALA PRO VAL LEU GLY PRO SER ALA GLU SER ALA SEQRES 18 B 249 ASN SER LYS VAL ASP LEU SER VAL TYR MET TRP LEU ASP SEQRES 19 B 249 ASN ILE SER LEU VAL ILE PRO THR TYR ARG LEU ASN PRO SEQRES 20 B 249 ASN LEU HELIX 1 AA1 VAL D 53 GLY D 61 1 9 HELIX 2 AA2 ASP A 19 CYS A 32 1 14 HELIX 3 AA3 LEU A 39 THR A 45 1 7 HELIX 4 AA4 ILE A 63 GLY A 74 1 12 HELIX 5 AA5 ASP A 76 LEU A 81 1 6 HELIX 6 AA6 SER A 82 TYR A 85 5 4 HELIX 7 AA7 THR A 120 ILE A 124 5 5 HELIX 8 AA8 ALA C 55 CYS C 60 1 6 HELIX 9 AA9 ALA C 119 ASN C 126 1 8 HELIX 10 AB1 ASP C 172 LEU C 176 5 5 HELIX 11 AB2 ASN C 225 GLU C 230 1 6 HELIX 12 AB3 SER B 53 ASP B 58 1 6 HELIX 13 AB4 SER B 62 GLN B 68 1 7 HELIX 14 AB5 PRO B 110 LYS B 115 1 6 HELIX 15 AB6 GLY B 118 ALA B 124 1 7 HELIX 16 AB7 ALA B 161 ARG B 165 5 5 HELIX 17 AB8 SER B 170 TYR B 177 1 8 SHEET 1 AA1 5 ASN A 10 SER A 13 0 SHEET 2 AA1 5 GLU C 198 VAL C 203 1 O THR C 200 N ASN A 10 SHEET 3 AA1 5 TYR C 130 VAL C 142 -1 N MET C 135 O VAL C 203 SHEET 4 AA1 5 LYS C 253 VAL C 267 -1 O GLU C 263 N THR C 134 SHEET 5 AA1 5 ALA C 64 SER C 72 -1 N TRP C 71 O VAL C 254 SHEET 1 AA2 4 ASN A 10 SER A 13 0 SHEET 2 AA2 4 GLU C 198 VAL C 203 1 O THR C 200 N ASN A 10 SHEET 3 AA2 4 TYR C 130 VAL C 142 -1 N MET C 135 O VAL C 203 SHEET 4 AA2 4 MET C 212 LYS C 213 -1 O MET C 212 N TRP C 131 SHEET 1 AA3 5 ARG A 47 SER A 54 0 SHEET 2 AA3 5 GLN A 177 GLY A 184 -1 O VAL A 180 N ASN A 50 SHEET 3 AA3 5 ARG A 92 ASN A 98 -1 N ARG A 93 O ALA A 183 SHEET 4 AA3 5 VAL A 140 VAL A 145 -1 O VAL A 145 N ARG A 92 SHEET 5 AA3 5 VAL C 30 PRO C 31 1 O VAL C 30 N GLU A 144 SHEET 1 AA4 4 THR A 61 PRO A 62 0 SHEET 2 AA4 4 SER A 166 THR A 172 -1 O TYR A 170 N THR A 61 SHEET 3 AA4 4 VAL A 110 PRO A 116 -1 N PHE A 113 O MET A 169 SHEET 4 AA4 4 SER A 130 THR A 133 -1 O THR A 133 N VAL A 110 SHEET 1 AA5 3 ILE A 154 PRO A 155 0 SHEET 2 AA5 3 PHE A 87 ARG A 89 -1 N TYR A 88 O ILE A 154 SHEET 3 AA5 3 THR A 189 PHE A 190 -1 O THR A 189 N ARG A 89 SHEET 1 AA6 4 LYS C 100 VAL C 105 0 SHEET 2 AA6 4 SER C 110 MET C 116 -1 O THR C 111 N VAL C 105 SHEET 3 AA6 4 LEU A 199 VAL A 206 -1 N LYS A 204 O LYS C 112 SHEET 4 AA6 4 GLN C 279 VAL C 280 -1 O GLN C 279 N GLN A 200 SHEET 1 AA7 4 VAL C 90 VAL C 93 0 SHEET 2 AA7 4 GLY C 234 MET C 245 -1 O LEU C 236 N ILE C 91 SHEET 3 AA7 4 THR C 148 PRO C 157 -1 N THR C 148 O MET C 245 SHEET 4 AA7 4 LYS C 188 ASP C 192 -1 O LEU C 191 N LEU C 151 SHEET 1 AA8 2 ALA B 25 GLU B 29 0 SHEET 2 AA8 2 THR B 32 ASP B 36 -1 O PHE B 34 N GLU B 27 SHEET 1 AA9 4 VAL B 71 VAL B 79 0 SHEET 2 AA9 4 LYS B 234 LEU B 248 -1 O LEU B 237 N ILE B 76 SHEET 3 AA9 4 TYR B 128 ASN B 140 -1 N ASP B 132 O ASP B 244 SHEET 4 AA9 4 SER B 189 ILE B 194 -1 O MET B 192 N VAL B 135 SHEET 1 AB1 4 VAL B 71 VAL B 79 0 SHEET 2 AB1 4 LYS B 234 LEU B 248 -1 O LEU B 237 N ILE B 76 SHEET 3 AB1 4 TYR B 128 ASN B 140 -1 N ASP B 132 O ASP B 244 SHEET 4 AB1 4 TYR B 203 ASP B 204 -1 O TYR B 203 N LEU B 129 SHEET 1 AB2 4 GLN B 106 LEU B 109 0 SHEET 2 AB2 4 VAL B 213 LEU B 224 -1 O LEU B 215 N TRP B 107 SHEET 3 AB2 4 ALA B 146 PRO B 155 -1 N ALA B 152 O TYR B 216 SHEET 4 AB2 4 GLY B 179 ASP B 183 -1 O LEU B 182 N LEU B 149 CISPEP 1 LEU B 109 PRO B 110 0 -1.83 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000