HEADER VIRUS 06-JAN-21 7BE9 TITLE KASHMIR BEE VIRUS EMPTY PARTICLE AT ACIDIC PH COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRUCTURAL POLYPROTEIN; COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: STRUCTURAL POLYPROTEIN; COMPND 6 CHAIN: C; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: STRUCTURAL POLYPROTEIN; COMPND 9 CHAIN: B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KASHMIR BEE VIRUS; SOURCE 3 ORGANISM_TAXID: 68876; SOURCE 4 MOL_ID: 2; SOURCE 5 ORGANISM_SCIENTIFIC: KASHMIR BEE VIRUS; SOURCE 6 ORGANISM_TAXID: 68876; SOURCE 7 MOL_ID: 3; SOURCE 8 ORGANISM_SCIENTIFIC: KASHMIR BEE VIRUS; SOURCE 9 ORGANISM_TAXID: 68876 KEYWDS VIRUSES, RIBOVIRIA, ORTHORNAVIRAE, PISUVIRICOTA, PISONIVIRICETES, KEYWDS 2 PICORNAVIRALES, DICISTROVIRIDAE, APARAVIRUS, KASHMIR BEE VIRUS, KEYWDS 3 VIRUS EXPDTA ELECTRON MICROSCOPY AUTHOR L.MUKHAMEDOVA,P.PLEVKA,T.FUZIK,D.HREBIK REVDAT 3 30-NOV-22 7BE9 1 JRNL REVDAT 2 17-MAR-21 7BE9 1 JRNL REVDAT 1 10-MAR-21 7BE9 0 JRNL AUTH L.MUKHAMEDOVA,T.FUZIK,J.NOVACEK,D.HREBIK,A.PRIDAL,G.A.MARTI, JRNL AUTH 2 D.M.A.GUERIN,P.PLEVKA JRNL TITL VIRION STRUCTURE AND IN VITRO GENOME RELEASE MECHANISM OF JRNL TITL 2 DICISTROVIRUS KASHMIR BEE VIRUS. JRNL REF J.VIROL. V. 95 2021 JRNL REFN ESSN 1098-5514 JRNL PMID 33658338 JRNL DOI 10.1128/JVI.01950-20 REMARK 2 REMARK 2 RESOLUTION. 4.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : RELION, EPU, GCTF, PHENIX, RELION, REMARK 3 RELION, RELION, RELION, PHENIX REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 5CDC REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : CROSS- CORRELATION REMARK 3 OVERALL ANISOTROPIC B VALUE : 61.480 REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.200 REMARK 3 NUMBER OF PARTICLES : 2366 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7BE9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113118. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : TISSUE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : KASHMIR BEE VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : 2.50 REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 6.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : 8193 REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON III (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : 200.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : 2.70 REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 9400.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 75000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: 180-MERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 2 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 2 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 4 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 4 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 5 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 5 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 6 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 6 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 6 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 7 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 7 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 7 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 8 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 8 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 8 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 9 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 9 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 9 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 10 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 10 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 10 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 11 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 12 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 12 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 12 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 13 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 13 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 13 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 14 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 14 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 14 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 15 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 15 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 15 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 16 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 16 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 16 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 17 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 17 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 17 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 18 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 18 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 18 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 19 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 19 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 19 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 20 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 20 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 20 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 21 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 21 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 21 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 22 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 22 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 22 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 23 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 23 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 23 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 24 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT2 24 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 24 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 25 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 25 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 25 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 26 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 26 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 26 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 27 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 27 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 28 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 28 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 28 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 29 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 29 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 29 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 30 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 30 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 30 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 31 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 31 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 32 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 32 -0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 32 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 33 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 33 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 33 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 34 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 34 -0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 34 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 35 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 35 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 35 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 36 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 36 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 36 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 37 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 37 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 37 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 38 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 38 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT3 38 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 39 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 39 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 39 0.500000 -0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 40 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 40 -0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 40 -0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 42 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 42 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 43 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 43 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT3 43 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 44 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 44 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 44 0.500000 0.309017 -0.809017 0.00000 REMARK 350 BIOMT1 45 0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 45 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 45 -0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT1 46 -0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 46 0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 46 -0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 47 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT2 47 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT3 47 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT1 48 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 48 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 48 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 49 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 49 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 49 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT1 50 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 50 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 50 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 51 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT2 51 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 51 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 52 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT2 52 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT3 52 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT1 53 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 53 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 53 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 54 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT3 54 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT1 55 0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT2 55 -0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT3 55 0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.309017 0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 56 -0.809017 0.500000 0.309017 0.00000 REMARK 350 BIOMT3 56 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 57 0.309017 -0.809017 -0.500000 0.00000 REMARK 350 BIOMT2 57 0.809017 0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 57 0.500000 -0.309017 0.809017 0.00000 REMARK 350 BIOMT1 58 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 58 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 58 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 59 -0.309017 -0.809017 0.500000 0.00000 REMARK 350 BIOMT2 59 0.809017 -0.500000 -0.309017 0.00000 REMARK 350 BIOMT3 59 0.500000 0.309017 0.809017 0.00000 REMARK 350 BIOMT1 60 -0.309017 0.809017 0.500000 0.00000 REMARK 350 BIOMT2 60 -0.809017 -0.500000 0.309017 0.00000 REMARK 350 BIOMT3 60 0.500000 -0.309017 0.809017 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 16 REMARK 465 SER A 17 REMARK 465 GLY A 18 REMARK 465 ASP A 19 REMARK 465 GLN A 104 REMARK 465 SER A 105 REMARK 465 VAL A 136 REMARK 465 ILE A 137 REMARK 465 ASP A 186 REMARK 465 GLY A 191 REMARK 465 GLY C 25 REMARK 465 ILE C 26 REMARK 465 GLY C 89A REMARK 465 LYS C 105A REMARK 465 GLY C 105B REMARK 465 ALA C 105C REMARK 465 THR C 105D REMARK 465 SER C 105E REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP C 117 OH TYR B 93 1.84 REMARK 500 OH TYR A 80 O TYR C 123 1.93 REMARK 500 NH2 ARG A 93 OE1 GLU A 144 1.94 REMARK 500 OG SER C 207 O LYS C 209 2.04 REMARK 500 OE1 GLN B 134 OG1 THR B 193 2.07 REMARK 500 NH2 ARG A 93 CD GLU A 144 2.08 REMARK 500 OE1 GLU B 229 OG SER B 233 2.08 REMARK 500 NH1 ARG C 103 O ALA C 287 2.10 REMARK 500 O THR B 82 ND2 ASN B 87 2.11 REMARK 500 OD1 ASP A 76 OG SER A 79 2.11 REMARK 500 O VAL C 105 OG1 THR C 110 2.14 REMARK 500 ND2 ASN A 38 CE MET C 54 2.17 REMARK 500 N ALA B 146 O LEU B 224 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 78 3.11 -65.19 REMARK 500 PHE A 83 4.29 -67.05 REMARK 500 GLN A 106 -61.68 -96.18 REMARK 500 TYR A 151 -76.79 -116.26 REMARK 500 ARG A 152 -18.95 -155.88 REMARK 500 LYS A 153 -169.02 -163.09 REMARK 500 LYS A 162 53.82 -91.77 REMARK 500 SER A 167 -168.35 -165.14 REMARK 500 ALA A 183 -168.21 -166.37 REMARK 500 THR A 189 145.87 -172.98 REMARK 500 LYS A 204 54.83 -94.89 REMARK 500 PRO C 3 -175.21 -67.42 REMARK 500 PRO C 11 -177.42 -68.92 REMARK 500 TYR C 12 -174.54 -173.81 REMARK 500 ASN C 14 -5.41 -59.75 REMARK 500 SER C 29 -174.36 -172.80 REMARK 500 ASN C 37 31.38 -96.02 REMARK 500 LEU C 40 -64.86 -95.15 REMARK 500 SER C 159 -169.90 -75.53 REMARK 500 ASP C 222 -38.69 -37.90 REMARK 500 ILE B 73 -62.62 -122.11 REMARK 500 SER B 91 134.70 -39.72 REMARK 500 PRO B 100 173.25 -58.27 REMARK 500 ASP B 211 99.30 -68.82 REMARK 500 VAL B 249 -72.42 -127.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-12137 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-12182 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-12173 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-12155 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-12167 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-12168 RELATED DB: EMDB REMARK 900 RELATED ID: EMD-12154 RELATED DB: EMDB REMARK 900 NATIVE PARTICLE OF KASHMIR BEE VIRUS AT ACIDIC PH DBREF 7BE9 A 9 206 UNP Q80AG2 Q80AG2_9VIRU 689 886 DBREF 7BE9 C 1 287 UNP Q80AG2 Q80AG2_9VIRU 381 668 DBREF 7BE9 B 62 257 UNP Q80AG2 Q80AG2_9VIRU 61 256 SEQRES 1 A 198 GLU ASN THR ILE SER PHE PHE ASP SER GLY ASP PRO GLU SEQRES 2 A 198 ARG MET ASN ASN GLU ALA LEU MET ARG GLY CYS GLY GLU SEQRES 3 A 198 GLN ILE VAL ASN LEU ARG PRO LEU LEU ARG THR PHE ARG SEQRES 4 A 198 THR ILE ASN ASP ASN TRP SER LEU ALA ALA ASN THR LYS SEQRES 5 A 198 THR PRO ILE THR ASP LEU THR ASN THR ALA ASP ALA GLU SEQRES 6 A 198 GLY ARG ASP TYR MET SER TYR LEU SER PHE LEU TYR ARG SEQRES 7 A 198 PHE TYR ARG GLY GLY ARG ARG TYR LYS PHE PHE ASN THR SEQRES 8 A 198 THR PRO LEU LYS GLN SER GLN THR CYS TYR VAL ARG SER SEQRES 9 A 198 PHE LEU ILE PRO ARG ASN TYR THR ALA ASP GLU ILE ASN SEQRES 10 A 198 THR ASP GLY PRO SER HIS ILE THR TYR PRO VAL ILE ASN SEQRES 11 A 198 PRO VAL HIS GLU VAL GLU VAL PRO PHE TYR SER GLN TYR SEQRES 12 A 198 ARG LYS ILE PRO ILE ALA SER THR SER ASP LYS GLY TYR SEQRES 13 A 198 ASP SER SER LEU MET TYR TYR THR ASN VAL GLY THR GLN SEQRES 14 A 198 GLN ILE VAL ALA ARG ALA GLY ASN ASP ASP PHE THR PHE SEQRES 15 A 198 GLY TRP MET ILE GLY THR PRO GLN LEU GLN GLY ILE THR SEQRES 16 A 198 LYS GLU VAL SEQRES 1 C 288 SER LYS PRO ARG ASN GLN ASN GLN VAL MET PRO TYR GLN SEQRES 2 C 288 ASN VAL PRO GLY TRP GLY TYR SER LEU TYR LYS GLY ILE SEQRES 3 C 288 ASP MET SER VAL PRO LEU ALA TYR ASP PRO ASN ASN GLU SEQRES 4 C 288 LEU GLY ASP LEU ARG ASP VAL PHE PRO SER ALA VAL ASP SEQRES 5 C 288 GLU MET ALA ILE GLY TYR VAL CYS GLY ASN PRO ALA ILE SEQRES 6 C 288 LYS HIS VAL LEU THR TRP SER THR THR ASP VAL VAL GLN SEQRES 7 C 288 ASN PRO ILE SER ASN GLY ASP ASP TRP GLY GLY VAL ILE SEQRES 8 C 288 PRO VAL GLY MET PRO CYS TYR SER LYS THR ILE ARG ALA SEQRES 9 C 288 VAL LYS GLY ALA THR SER THR SER LYS THR GLU VAL MET SEQRES 10 C 288 ASP PRO ALA PRO CYS GLU TYR VAL ALA ASN LEU PHE SER SEQRES 11 C 288 TYR TRP ARG ALA THR MET CYS TYR ARG ILE THR VAL VAL SEQRES 12 C 288 LYS THR ALA PHE HIS THR GLY ARG LEU GLU ILE PHE PHE SEQRES 13 C 288 GLU PRO GLY SER ILE PRO THR VAL ARG THR ALA ASP ASN SEQRES 14 C 288 LEU GLY PRO ASP GLN THR GLN LEU ASN GLY THR ILE ALA SEQRES 15 C 288 PRO SER ASP ASN ASN TYR LYS TYR ILE LEU ASP LEU THR SEQRES 16 C 288 ASN ASP THR GLU VAL THR ILE LYS VAL PRO TYR VAL SER SEQRES 17 C 288 ASN LYS MET PHE MET LYS THR VAL GLY ILE TYR GLY ALA SEQRES 18 C 288 HIS ASP GLU ASP ASN TRP ASN PHE ASP GLU SER PHE THR SEQRES 19 C 288 GLY PHE LEU CYS ILE ARG PRO ILE THR LYS LEU MET ALA SEQRES 20 C 288 PRO ASP THR VAL SER GLN LYS VAL SER ILE VAL VAL TRP SEQRES 21 C 288 LYS TRP ALA GLU ASP VAL VAL VAL VAL GLU PRO LYS PRO SEQRES 22 C 288 LEU THR SER GLY PRO THR GLN VAL TYR ASN PRO PRO ALA SEQRES 23 C 288 VAL ALA SEQRES 1 B 196 SER ILE ILE GLN PHE LEU GLN ARG PRO VAL LEU ILE ASP SEQRES 2 B 196 ASN ILE GLU ILE VAL ALA GLY THR THR ALA ASP ASN ASN SEQRES 3 B 196 THR ALA LEU SER ARG TYR VAL LEU ASP ARG THR ASN PRO SEQRES 4 B 196 GLN LYS TYR ILE LYS GLN TRP THR LEU PRO SER THR VAL SEQRES 5 B 196 LEU LYS ALA GLY GLY LYS ALA GLN LYS LEU ALA ASN PHE SEQRES 6 B 196 LYS TYR LEU ARG CYS ASP VAL GLN VAL LYS ILE VAL LEU SEQRES 7 B 196 ASN ALA ASN PRO PHE ILE ALA GLY ARG LEU TYR LEU ALA SEQRES 8 B 196 TYR SER PRO TYR ASP ASP LYS VAL ALA PRO GLU ARG ARG SEQRES 9 B 196 ILE ILE TYR THR SER ARG ALA GLY VAL THR GLY TYR PRO SEQRES 10 B 196 GLY VAL GLU LEU ASP PHE GLN LEU ASP ASN SER VAL GLU SEQRES 11 B 196 MET THR ILE PRO TYR ALA SER PHE GLN GLU ALA TYR ASP SEQRES 12 B 196 LEU VAL SER GLY ASN GLU ASP PHE VAL GLN LEU TYR LEU SEQRES 13 B 196 PHE THR ILE ALA PRO VAL LEU GLY PRO SER ALA GLU SER SEQRES 14 B 196 ALA ASN SER LYS VAL ASP LEU SER VAL TYR MET TRP LEU SEQRES 15 B 196 ASP ASN ILE SER LEU VAL ILE PRO THR TYR ARG LEU ASN SEQRES 16 B 196 PRO HELIX 1 AA1 ARG A 22 CYS A 32 1 11 HELIX 2 AA2 LEU A 39 THR A 45 1 7 HELIX 3 AA3 ILE A 63 GLY A 74 1 12 HELIX 4 AA4 ASP A 76 LEU A 81 1 6 HELIX 5 AA5 SER A 82 TYR A 85 5 4 HELIX 6 AA6 ILE C 56 GLY C 61 1 6 HELIX 7 AA7 ALA C 119 ASN C 126 1 8 HELIX 8 AA8 GLN C 173 ASN C 177 5 5 HELIX 9 AA9 ASN C 225 SER C 231 1 7 HELIX 10 AB1 PRO B 110 GLY B 117 1 8 HELIX 11 AB2 ALA B 161 ARG B 165 5 5 HELIX 12 AB3 SER B 170 TYR B 177 1 8 SHEET 1 AA1 5 THR A 11 SER A 13 0 SHEET 2 AA1 5 GLU C 198 VAL C 203 1 O THR C 200 N ILE A 12 SHEET 3 AA1 5 TYR C 130 VAL C 142 -1 N MET C 135 O VAL C 203 SHEET 4 AA1 5 LYS C 253 VAL C 267 -1 O TRP C 259 N ARG C 138 SHEET 5 AA1 5 ILE C 65 SER C 72 -1 N TRP C 71 O VAL C 254 SHEET 1 AA2 4 THR A 11 SER A 13 0 SHEET 2 AA2 4 GLU C 198 VAL C 203 1 O THR C 200 N ILE A 12 SHEET 3 AA2 4 TYR C 130 VAL C 142 -1 N MET C 135 O VAL C 203 SHEET 4 AA2 4 MET C 212 LYS C 213 -1 O MET C 212 N TRP C 131 SHEET 1 AA3 4 THR A 48 LEU A 55 0 SHEET 2 AA3 4 THR A 176 GLY A 184 -1 O VAL A 180 N ILE A 49 SHEET 3 AA3 4 ARG A 92 ASN A 98 -1 N PHE A 97 O ILE A 179 SHEET 4 AA3 4 VAL A 140 HIS A 141 -1 O HIS A 141 N PHE A 96 SHEET 1 AA4 4 LYS A 60 PRO A 62 0 SHEET 2 AA4 4 SER A 166 THR A 172 -1 O TYR A 170 N THR A 61 SHEET 3 AA4 4 VAL A 110 PRO A 116 -1 N ARG A 111 O TYR A 171 SHEET 4 AA4 4 HIS A 131 THR A 133 -1 O HIS A 131 N SER A 112 SHEET 1 AA5 2 PHE A 87 TYR A 88 0 SHEET 2 AA5 2 ILE A 154 PRO A 155 -1 O ILE A 154 N TYR A 88 SHEET 1 AA6 2 VAL A 143 GLU A 144 0 SHEET 2 AA6 2 VAL C 30 PRO C 31 1 O VAL C 30 N GLU A 144 SHEET 1 AA7 3 LEU A 199 THR A 203 0 SHEET 2 AA7 3 THR C 113 MET C 116 -1 O GLU C 114 N GLY A 201 SHEET 3 AA7 3 LYS C 100 ARG C 103 -1 N ARG C 103 O THR C 113 SHEET 1 AA8 4 PRO C 92 VAL C 93 0 SHEET 2 AA8 4 GLY C 234 MET C 245 -1 O GLY C 234 N VAL C 93 SHEET 3 AA8 4 THR C 148 PRO C 157 -1 N THR C 148 O MET C 245 SHEET 4 AA8 4 LYS C 188 ASP C 192 -1 O TYR C 189 N ILE C 153 SHEET 1 AA9 2 THR C 162 ARG C 164 0 SHEET 2 AA9 2 LEU C 169 PRO C 171 -1 O GLY C 170 N VAL C 163 SHEET 1 AB1 4 VAL B 71 LEU B 72 0 SHEET 2 AB1 4 SER B 238 LEU B 248 -1 O MET B 241 N VAL B 71 SHEET 3 AB1 4 TYR B 128 VAL B 138 -1 N GLN B 134 O TRP B 242 SHEET 4 AB1 4 SER B 189 ILE B 194 -1 O MET B 192 N VAL B 135 SHEET 1 AB2 4 VAL B 71 LEU B 72 0 SHEET 2 AB2 4 SER B 238 LEU B 248 -1 O MET B 241 N VAL B 71 SHEET 3 AB2 4 TYR B 128 VAL B 138 -1 N GLN B 134 O TRP B 242 SHEET 4 AB2 4 TYR B 203 ASP B 204 -1 O TYR B 203 N LEU B 129 SHEET 1 AB3 2 GLU B 77 ILE B 78 0 SHEET 2 AB3 2 VAL B 235 ASP B 236 -1 O VAL B 235 N ILE B 78 SHEET 1 AB4 4 LYS B 105 LEU B 109 0 SHEET 2 AB4 4 VAL B 213 THR B 219 -1 O LEU B 217 N LYS B 105 SHEET 3 AB4 4 ARG B 148 SER B 154 -1 N TYR B 150 O PHE B 218 SHEET 4 AB4 4 VAL B 180 ASP B 183 -1 O LEU B 182 N LEU B 149 CISPEP 1 LEU B 109 PRO B 110 0 7.64 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000