HEADER CHAPERONE 23-DEC-20 7BEE TITLE CRYSTAL STRUCTURE OF A HSP47-COLLAGEN PEPTIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: COLLAGEN-BINDING PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: SERPIN H1; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: 21ER COLLAGEN MODEL PEPTIDE; COMPND 8 CHAIN: C, D, E, F, G, H; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANIS LUPUS FAMILIARIS; SOURCE 3 ORGANISM_COMMON: DOG; SOURCE 4 ORGANISM_TAXID: 9615; SOURCE 5 GENE: SERPINH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606 KEYWDS HSP, HSP47, COLLAGEN, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR E.T.ABRAHAM,J.M.GEBAUER,U.BAUMANN REVDAT 3 31-JAN-24 7BEE 1 REMARK REVDAT 2 08-DEC-21 7BEE 1 JRNL REVDAT 1 10-NOV-21 7BEE 0 JRNL AUTH E.T.ABRAHAM,S.OECAL,M.MORGELIN,P.W.N.SCHMID,J.BUCHNER, JRNL AUTH 2 U.BAUMANN,J.M.GEBAUER JRNL TITL COLLAGEN'S PRIMARY STRUCTURE DETERMINES COLLAGEN:HSP47 JRNL TITL 2 COMPLEX STOICHIOMETRY. JRNL REF J.BIOL.CHEM. V. 297 01169 2021 JRNL REFN ESSN 1083-351X JRNL PMID 34487762 JRNL DOI 10.1016/J.JBC.2021.101169 REMARK 2 REMARK 2 RESOLUTION. 1.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13RC2_2986 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 75695 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 3838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.8100 - 5.8144 1.00 2891 146 0.1720 0.2010 REMARK 3 2 5.8144 - 4.6164 1.00 2755 148 0.1697 0.2077 REMARK 3 3 4.6164 - 4.0332 1.00 2696 163 0.1573 0.1832 REMARK 3 4 4.0332 - 3.6646 1.00 2722 130 0.1824 0.2237 REMARK 3 5 3.6646 - 3.4020 1.00 2675 162 0.1992 0.2339 REMARK 3 6 3.4020 - 3.2015 1.00 2691 117 0.2082 0.2189 REMARK 3 7 3.2015 - 3.0412 1.00 2718 123 0.2334 0.2564 REMARK 3 8 3.0412 - 2.9088 1.00 2646 148 0.2412 0.2933 REMARK 3 9 2.9088 - 2.7969 1.00 2696 130 0.2304 0.2702 REMARK 3 10 2.7969 - 2.7004 1.00 2654 124 0.2339 0.2583 REMARK 3 11 2.7004 - 2.6159 1.00 2625 160 0.2448 0.2792 REMARK 3 12 2.6159 - 2.5412 1.00 2646 147 0.2386 0.3094 REMARK 3 13 2.5412 - 2.4743 1.00 2711 117 0.2474 0.2982 REMARK 3 14 2.4743 - 2.4139 1.00 2593 169 0.2542 0.3003 REMARK 3 15 2.4139 - 2.3590 1.00 2625 169 0.2362 0.2553 REMARK 3 16 2.3590 - 2.3088 1.00 2661 147 0.2378 0.2442 REMARK 3 17 2.3088 - 2.2626 1.00 2619 139 0.2315 0.2974 REMARK 3 18 2.2626 - 2.2199 1.00 2707 118 0.2436 0.3006 REMARK 3 19 2.2199 - 2.1803 1.00 2634 148 0.2433 0.2424 REMARK 3 20 2.1803 - 2.1433 1.00 2620 151 0.2448 0.2916 REMARK 3 21 2.1433 - 2.1088 1.00 2616 148 0.2495 0.3011 REMARK 3 22 2.1088 - 2.0763 1.00 2673 135 0.2562 0.2857 REMARK 3 23 2.0763 - 2.0458 1.00 2599 130 0.2546 0.3064 REMARK 3 24 2.0458 - 2.0170 1.00 2658 121 0.2666 0.2802 REMARK 3 25 2.0170 - 1.9897 1.00 2648 140 0.2828 0.3218 REMARK 3 26 1.9897 - 1.9639 1.00 2643 135 0.2870 0.3401 REMARK 3 27 1.9639 - 1.9393 0.95 2435 173 0.3013 0.3383 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.01 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 35 THROUGH 367 OR REMARK 3 RESID 375 THROUGH 412)) REMARK 3 SELECTION : (CHAIN B AND RESID 35 THROUGH 412) REMARK 3 ATOM PAIRS NUMBER : 3455 REMARK 3 RMSD : NULL REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN C AND RESID 0 THROUGH 18) REMARK 3 SELECTION : (CHAIN D AND RESID 0 THROUGH 18) REMARK 3 ATOM PAIRS NUMBER : 523 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 2 REMARK 3 REFERENCE SELECTION: (CHAIN C AND RESID 0 THROUGH 18) REMARK 3 SELECTION : (CHAIN E AND RESID 0 THROUGH 18) REMARK 3 ATOM PAIRS NUMBER : 523 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 3 REMARK 3 REFERENCE SELECTION: (CHAIN C AND RESID 0 THROUGH 18) REMARK 3 SELECTION : (CHAIN F AND RESID 0 THROUGH 18) REMARK 3 ATOM PAIRS NUMBER : 523 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 4 REMARK 3 REFERENCE SELECTION: (CHAIN C AND RESID 0 THROUGH 18) REMARK 3 SELECTION : (CHAIN G AND RESID 0 THROUGH 18) REMARK 3 ATOM PAIRS NUMBER : 523 REMARK 3 RMSD : NULL REMARK 3 NCS OPERATOR : 5 REMARK 3 REFERENCE SELECTION: (CHAIN C AND RESID 0 THROUGH 18) REMARK 3 SELECTION : CHAIN H REMARK 3 ATOM PAIRS NUMBER : 523 REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 23-DEC-20. REMARK 100 THE DEPOSITION ID IS D_1292112373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-OCT-17 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75968 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.939 REMARK 200 RESOLUTION RANGE LOW (A) : 46.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.1700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.86250 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4AU2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 18-26% PEG 3350, 1-6% REMARK 280 TACSIMATE PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 124.98667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.49333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 62.49333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 124.98667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -37.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 413 REMARK 465 MET A 414 REMARK 465 ARG A 415 REMARK 465 ASP A 416 REMARK 465 GLU A 417 REMARK 465 LEU A 418 REMARK 465 LEU A 419 REMARK 465 GLU A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 HIS A 426 REMARK 465 GLN B 368 REMARK 465 ASP B 369 REMARK 465 ILE B 370 REMARK 465 TYR B 371 REMARK 465 GLY B 372 REMARK 465 ARG B 373 REMARK 465 GLU B 374 REMARK 465 ARG B 415 REMARK 465 ASP B 416 REMARK 465 GLU B 417 REMARK 465 LEU B 418 REMARK 465 LEU B 419 REMARK 465 GLU B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 465 HIS B 426 REMARK 465 GLY C 21 REMARK 465 PRO D 20 REMARK 465 GLY D 21 REMARK 465 PRO E 20 REMARK 465 GLY E 21 REMARK 465 PRO G 20 REMARK 465 GLY G 21 REMARK 465 PRO H 19 REMARK 465 PRO H 20 REMARK 465 GLY H 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 282 O HOH B 501 2.05 REMARK 500 NZ LYS A 86 OG SER A 338 2.09 REMARK 500 O HOH A 578 O HOH A 632 2.13 REMARK 500 O HOH A 597 O HOH A 642 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 401 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 ACE D 0 O - C - N ANGL. DEV. = -18.2 DEGREES REMARK 500 ACE F 0 O - C - N ANGL. DEV. = 21.3 DEGREES REMARK 500 PRO F 1 C - N - CA ANGL. DEV. = -18.6 DEGREES REMARK 500 PRO F 1 C - N - CD ANGL. DEV. = 17.8 DEGREES REMARK 500 PRO G 1 C - N - CA ANGL. DEV. = -15.4 DEGREES REMARK 500 PRO G 1 C - N - CD ANGL. DEV. = 15.3 DEGREES REMARK 500 ACE H 0 O - C - N ANGL. DEV. = -20.6 DEGREES REMARK 500 PRO H 1 C - N - CD ANGL. DEV. = -17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 65 -96.81 -106.28 REMARK 500 ALA A 87 -133.18 53.73 REMARK 500 LYS A 344 49.28 -145.42 REMARK 500 GLN A 368 -77.88 -8.03 REMARK 500 ASP A 369 100.22 -162.42 REMARK 500 PHE A 402 144.82 -174.67 REMARK 500 GLU B 65 -96.93 -103.98 REMARK 500 ALA B 87 -134.14 54.22 REMARK 500 LYS B 344 53.97 -145.23 REMARK 500 PHE B 402 143.42 -174.14 REMARK 500 REMARK 500 REMARK: NULL DBREF 7BEE A 36 418 UNP E2RHY7 E2RHY7_CANLF 36 418 DBREF 7BEE B 36 418 UNP E2RHY7 E2RHY7_CANLF 36 418 DBREF 7BEE C 0 21 PDB 7BEE 7BEE 0 21 DBREF 7BEE D 0 21 PDB 7BEE 7BEE 0 21 DBREF 7BEE E 0 21 PDB 7BEE 7BEE 0 21 DBREF 7BEE F 0 21 PDB 7BEE 7BEE 0 21 DBREF 7BEE G 0 21 PDB 7BEE 7BEE 0 21 DBREF 7BEE H 0 21 PDB 7BEE 7BEE 0 21 SEQADV 7BEE MET A 35 UNP E2RHY7 INITIATING METHIONINE SEQADV 7BEE LEU A 419 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE GLU A 420 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE HIS A 421 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE HIS A 422 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE HIS A 423 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE HIS A 424 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE HIS A 425 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE HIS A 426 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE MET B 35 UNP E2RHY7 INITIATING METHIONINE SEQADV 7BEE LEU B 419 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE GLU B 420 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE HIS B 421 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE HIS B 422 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE HIS B 423 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE HIS B 424 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE HIS B 425 UNP E2RHY7 EXPRESSION TAG SEQADV 7BEE HIS B 426 UNP E2RHY7 EXPRESSION TAG SEQRES 1 A 392 MET LEU SER PRO LYS ALA ALA THR LEU ALA GLU ARG SER SEQRES 2 A 392 ALA GLY LEU ALA PHE SER LEU TYR GLN ALA MET ALA LYS SEQRES 3 A 392 ASP GLN ALA VAL GLU ASN ILE LEU LEU SER PRO VAL VAL SEQRES 4 A 392 VAL ALA SER SER LEU GLY LEU VAL SER LEU GLY GLY LYS SEQRES 5 A 392 ALA THR THR ALA SER GLN ALA LYS ALA VAL LEU SER ALA SEQRES 6 A 392 GLU GLN LEU ARG ASP GLU GLU VAL HIS ALA GLY LEU GLY SEQRES 7 A 392 GLU LEU LEU ARG SER LEU SER ASN SER THR ALA ARG ASN SEQRES 8 A 392 VAL THR TRP LYS LEU GLY SER ARG LEU TYR GLY PRO SER SEQRES 9 A 392 SER VAL SER PHE ALA GLU ASP PHE VAL ARG SER SER LYS SEQRES 10 A 392 GLN HIS TYR ASN CYS GLU HIS SER LYS ILE ASN PHE ARG SEQRES 11 A 392 ASP LYS ARG SER ALA LEU GLN SER ILE ASN GLU TRP ALA SEQRES 12 A 392 ALA GLN THR THR ASP GLY LYS LEU PRO GLU VAL THR LYS SEQRES 13 A 392 ASP VAL GLU ARG THR ASP GLY ALA LEU LEU VAL ASN ALA SEQRES 14 A 392 MET PHE PHE LYS PRO HIS TRP ASP GLU LYS PHE HIS HIS SEQRES 15 A 392 LYS MET VAL ASP ASN ARG GLY PHE MET VAL THR ARG SER SEQRES 16 A 392 TYR THR VAL GLY VAL THR MET MET HIS ARG THR GLY LEU SEQRES 17 A 392 TYR ASN TYR TYR ASP ASP GLU LYS GLU LYS LEU GLN ILE SEQRES 18 A 392 VAL GLU MET PRO LEU ALA HIS LYS LEU SER SER LEU ILE SEQRES 19 A 392 ILE LEU MET PRO HIS HIS VAL GLU PRO LEU GLU ARG LEU SEQRES 20 A 392 GLU LYS LEU LEU THR LYS GLU GLN LEU LYS ILE TRP MET SEQRES 21 A 392 GLY LYS MET GLN LYS LYS ALA VAL ALA ILE SER LEU PRO SEQRES 22 A 392 LYS GLY VAL VAL GLU VAL THR HIS ASP LEU GLN LYS HIS SEQRES 23 A 392 LEU ALA GLY LEU GLY LEU THR GLU ALA ILE ASP LYS ASN SEQRES 24 A 392 LYS ALA ASP LEU SER ARG MET SER GLY LYS LYS ASP LEU SEQRES 25 A 392 TYR LEU ALA SER VAL PHE HIS ALA THR ALA PHE GLU TRP SEQRES 26 A 392 ASP THR GLU GLY ASN PRO PHE ASP GLN ASP ILE TYR GLY SEQRES 27 A 392 ARG GLU GLU LEU ARG SER PRO LYS LEU PHE TYR ALA ASP SEQRES 28 A 392 HIS PRO PHE ILE PHE LEU VAL ARG ASP THR GLN SER GLY SEQRES 29 A 392 SER LEU LEU PHE ILE GLY ARG LEU VAL ARG PRO LYS GLY SEQRES 30 A 392 ASP LYS MET ARG ASP GLU LEU LEU GLU HIS HIS HIS HIS SEQRES 31 A 392 HIS HIS SEQRES 1 B 392 MET LEU SER PRO LYS ALA ALA THR LEU ALA GLU ARG SER SEQRES 2 B 392 ALA GLY LEU ALA PHE SER LEU TYR GLN ALA MET ALA LYS SEQRES 3 B 392 ASP GLN ALA VAL GLU ASN ILE LEU LEU SER PRO VAL VAL SEQRES 4 B 392 VAL ALA SER SER LEU GLY LEU VAL SER LEU GLY GLY LYS SEQRES 5 B 392 ALA THR THR ALA SER GLN ALA LYS ALA VAL LEU SER ALA SEQRES 6 B 392 GLU GLN LEU ARG ASP GLU GLU VAL HIS ALA GLY LEU GLY SEQRES 7 B 392 GLU LEU LEU ARG SER LEU SER ASN SER THR ALA ARG ASN SEQRES 8 B 392 VAL THR TRP LYS LEU GLY SER ARG LEU TYR GLY PRO SER SEQRES 9 B 392 SER VAL SER PHE ALA GLU ASP PHE VAL ARG SER SER LYS SEQRES 10 B 392 GLN HIS TYR ASN CYS GLU HIS SER LYS ILE ASN PHE ARG SEQRES 11 B 392 ASP LYS ARG SER ALA LEU GLN SER ILE ASN GLU TRP ALA SEQRES 12 B 392 ALA GLN THR THR ASP GLY LYS LEU PRO GLU VAL THR LYS SEQRES 13 B 392 ASP VAL GLU ARG THR ASP GLY ALA LEU LEU VAL ASN ALA SEQRES 14 B 392 MET PHE PHE LYS PRO HIS TRP ASP GLU LYS PHE HIS HIS SEQRES 15 B 392 LYS MET VAL ASP ASN ARG GLY PHE MET VAL THR ARG SER SEQRES 16 B 392 TYR THR VAL GLY VAL THR MET MET HIS ARG THR GLY LEU SEQRES 17 B 392 TYR ASN TYR TYR ASP ASP GLU LYS GLU LYS LEU GLN ILE SEQRES 18 B 392 VAL GLU MET PRO LEU ALA HIS LYS LEU SER SER LEU ILE SEQRES 19 B 392 ILE LEU MET PRO HIS HIS VAL GLU PRO LEU GLU ARG LEU SEQRES 20 B 392 GLU LYS LEU LEU THR LYS GLU GLN LEU LYS ILE TRP MET SEQRES 21 B 392 GLY LYS MET GLN LYS LYS ALA VAL ALA ILE SER LEU PRO SEQRES 22 B 392 LYS GLY VAL VAL GLU VAL THR HIS ASP LEU GLN LYS HIS SEQRES 23 B 392 LEU ALA GLY LEU GLY LEU THR GLU ALA ILE ASP LYS ASN SEQRES 24 B 392 LYS ALA ASP LEU SER ARG MET SER GLY LYS LYS ASP LEU SEQRES 25 B 392 TYR LEU ALA SER VAL PHE HIS ALA THR ALA PHE GLU TRP SEQRES 26 B 392 ASP THR GLU GLY ASN PRO PHE ASP GLN ASP ILE TYR GLY SEQRES 27 B 392 ARG GLU GLU LEU ARG SER PRO LYS LEU PHE TYR ALA ASP SEQRES 28 B 392 HIS PRO PHE ILE PHE LEU VAL ARG ASP THR GLN SER GLY SEQRES 29 B 392 SER LEU LEU PHE ILE GLY ARG LEU VAL ARG PRO LYS GLY SEQRES 30 B 392 ASP LYS MET ARG ASP GLU LEU LEU GLU HIS HIS HIS HIS SEQRES 31 B 392 HIS HIS SEQRES 1 C 22 ACE PRO PRO GLY PRO PRO GLY PRO PRO GLY PRO ARG GLY SEQRES 2 C 22 PHE PRO GLY PRO PRO GLY PRO PRO GLY SEQRES 1 D 22 ACE PRO PRO GLY PRO PRO GLY PRO PRO GLY PRO ARG GLY SEQRES 2 D 22 PHE PRO GLY PRO PRO GLY PRO PRO GLY SEQRES 1 E 22 ACE PRO PRO GLY PRO PRO GLY PRO PRO GLY PRO ARG GLY SEQRES 2 E 22 PHE PRO GLY PRO PRO GLY PRO PRO GLY SEQRES 1 F 22 ACE PRO PRO GLY PRO PRO GLY PRO PRO GLY PRO ARG GLY SEQRES 2 F 22 PHE PRO GLY PRO PRO GLY PRO PRO GLY SEQRES 1 G 22 ACE PRO PRO GLY PRO PRO GLY PRO PRO GLY PRO ARG GLY SEQRES 2 G 22 PHE PRO GLY PRO PRO GLY PRO PRO GLY SEQRES 1 H 22 ACE PRO PRO GLY PRO PRO GLY PRO PRO GLY PRO ARG GLY SEQRES 2 H 22 PHE PRO GLY PRO PRO GLY PRO PRO GLY HET ACE C 0 3 HET ACE D 0 3 HET ACE E 0 3 HET ACE F 0 3 HET ACE G 0 3 HET ACE H 0 3 HETNAM ACE ACETYL GROUP FORMUL 3 ACE 6(C2 H4 O) FORMUL 9 HOH *345(H2 O) HELIX 1 AA1 SER A 37 LYS A 60 1 24 HELIX 2 AA2 SER A 70 GLY A 85 1 16 HELIX 3 AA3 LYS A 86 LEU A 97 1 12 HELIX 4 AA4 ARG A 103 SER A 119 1 17 HELIX 5 AA5 ALA A 143 ASN A 155 1 13 HELIX 6 AA6 ASP A 165 THR A 181 1 17 HELIX 7 AA7 ALA A 261 LYS A 263 5 3 HELIX 8 AA8 LEU A 278 LEU A 285 1 8 HELIX 9 AA9 THR A 286 MET A 297 1 12 HELIX 10 AB1 LEU A 317 LEU A 324 1 8 HELIX 11 AB2 LEU A 337 GLY A 342 1 6 HELIX 12 AB3 SER B 37 LYS B 60 1 24 HELIX 13 AB4 SER B 70 GLY B 85 1 16 HELIX 14 AB5 LYS B 86 LEU B 97 1 12 HELIX 15 AB6 ARG B 103 SER B 119 1 17 HELIX 16 AB7 ALA B 143 ASN B 155 1 13 HELIX 17 AB8 ASP B 165 THR B 181 1 17 HELIX 18 AB9 ALA B 261 LYS B 263 5 3 HELIX 19 AC1 LEU B 278 LEU B 285 1 8 HELIX 20 AC2 THR B 286 MET B 297 1 12 HELIX 21 AC3 LEU B 317 LEU B 324 1 8 HELIX 22 AC4 LEU B 337 GLY B 342 1 6 SHEET 1 AA1 8 ILE A 67 LEU A 69 0 SHEET 2 AA1 8 LEU A 400 LEU A 406 -1 O ILE A 403 N LEU A 69 SHEET 3 AA1 8 PHE A 388 ASP A 394 -1 N VAL A 392 O LEU A 401 SHEET 4 AA1 8 SER A 265 PRO A 272 -1 N ILE A 268 O LEU A 391 SHEET 5 AA1 8 LEU A 253 PRO A 259 -1 N MET A 258 O LEU A 267 SHEET 6 AA1 8 THR A 231 ASP A 248 -1 N ASP A 248 O LEU A 253 SHEET 7 AA1 8 GLN A 298 ASP A 316 -1 O LYS A 308 N THR A 235 SHEET 8 AA1 8 VAL A 219 MET A 225 0 SHEET 1 AA2 7 GLU A 157 ILE A 161 0 SHEET 2 AA2 7 THR A 127 PRO A 137 1 N LEU A 134 O GLU A 157 SHEET 3 AA2 7 ALA A 198 LYS A 207 -1 O LEU A 199 N TYR A 135 SHEET 4 AA2 7 LEU A 348 TRP A 359 1 O ALA A 354 N ASN A 202 SHEET 5 AA2 7 GLN A 298 ASP A 316 -1 N VAL A 311 O PHE A 357 SHEET 6 AA2 7 THR A 231 ASP A 248 -1 N THR A 235 O LYS A 308 SHEET 7 AA2 7 LYS A 380 TYR A 383 0 SHEET 1 AA3 7 ILE B 67 LEU B 69 0 SHEET 2 AA3 7 LEU B 400 LEU B 406 -1 O ILE B 403 N LEU B 69 SHEET 3 AA3 7 PHE B 388 ASP B 394 -1 N VAL B 392 O LEU B 401 SHEET 4 AA3 7 SER B 265 PRO B 272 -1 N LEU B 270 O ILE B 389 SHEET 5 AA3 7 LEU B 253 PRO B 259 -1 N MET B 258 O LEU B 267 SHEET 6 AA3 7 TYR B 230 ASP B 248 -1 N ASP B 248 O LEU B 253 SHEET 7 AA3 7 VAL B 219 THR B 227 -1 N ASP B 220 O MET B 236 SHEET 1 AA4 8 ILE B 67 LEU B 69 0 SHEET 2 AA4 8 LEU B 400 LEU B 406 -1 O ILE B 403 N LEU B 69 SHEET 3 AA4 8 PHE B 388 ASP B 394 -1 N VAL B 392 O LEU B 401 SHEET 4 AA4 8 SER B 265 PRO B 272 -1 N LEU B 270 O ILE B 389 SHEET 5 AA4 8 LEU B 253 PRO B 259 -1 N MET B 258 O LEU B 267 SHEET 6 AA4 8 TYR B 230 ASP B 248 -1 N ASP B 248 O LEU B 253 SHEET 7 AA4 8 GLN B 298 PRO B 307 -1 O VAL B 302 N GLY B 241 SHEET 8 AA4 8 LYS B 380 TYR B 383 1 O LYS B 380 N ALA B 303 SHEET 1 AA5 5 GLU B 157 ILE B 161 0 SHEET 2 AA5 5 THR B 127 PRO B 137 1 N LEU B 134 O GLU B 157 SHEET 3 AA5 5 ALA B 198 LYS B 207 -1 O LEU B 199 N TYR B 135 SHEET 4 AA5 5 LEU B 348 TRP B 359 1 O ALA B 354 N ASN B 202 SHEET 5 AA5 5 GLY B 309 ASP B 316 -1 N HIS B 315 O HIS B 353 LINK C ACE C 0 N PRO C 1 1555 1555 1.33 LINK C ACE D 0 N PRO D 1 1555 1555 1.33 LINK C ACE E 0 N PRO E 1 1555 1555 1.33 LINK C ACE F 0 N PRO F 1 1555 1555 1.33 LINK C ACE G 0 N PRO G 1 1555 1555 1.34 LINK C ACE H 0 N PRO H 1 1555 1555 1.34 CRYST1 96.683 96.683 187.480 90.00 90.00 120.00 P 32 2 1 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010343 0.005972 0.000000 0.00000 SCALE2 0.000000 0.011943 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005334 0.00000