HEADER VIRAL PROTEIN 02-JAN-21 7BFB TITLE CRYSTAL STRUCTURE OF EBSELEN COVALENTLY BOUND TO THE MAIN PROTEASE TITLE 2 (3CLPRO/MPRO) OF SARS-COV-2. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAIN PROTEASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PP1AB,ORF1AB POLYPROTEIN; COMPND 5 EC: 3.4.19.12,3.4.22.-,3.4.22.69,2.7.7.48,3.6.4.12,3.6.4.13,3.1.13.-, COMPND 6 3.1.-.-,2.1.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SARS-COV-2, MPRO, 3CLPRO, EXSCALATE4COV, DRUG DISCOVERY, ELETTRA, KEYWDS 2 VIRAL PROTEIN, EBSELEN EXPDTA X-RAY DIFFRACTION AUTHOR E.COSTANZI,N.DEMITRI,B.GIABBAI,P.STORICI REVDAT 3 07-FEB-24 7BFB 1 REMARK REVDAT 2 12-APR-23 7BFB 1 COMPND HETNAM HETSYN REVDAT 1 03-MAR-21 7BFB 0 JRNL AUTH E.COSTANZI,N.DEMITRI,B.GIABBAI,P.STORICI JRNL TITL CRYSTAL STRUCTURE OF EBSELEN COVALENTLY BOUND TO THE MAIN JRNL TITL 2 PROTEASE (3CLPRO/MPRO) OF SARS-COV-2. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4085 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 86323 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.199 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 52.3000 - 6.3700 0.98 2627 200 0.1571 0.1517 REMARK 3 2 6.3700 - 5.0500 0.99 2662 181 0.1628 0.1603 REMARK 3 3 5.0500 - 4.4200 1.00 2762 119 0.1312 0.1558 REMARK 3 4 4.4200 - 4.0100 1.00 2728 123 0.1318 0.1178 REMARK 3 5 4.0100 - 3.7200 1.00 2740 132 0.1471 0.1636 REMARK 3 6 3.7200 - 3.5100 1.00 2770 170 0.1611 0.1826 REMARK 3 7 3.5100 - 3.3300 1.00 2673 190 0.1822 0.2237 REMARK 3 8 3.3300 - 3.1800 1.00 2750 124 0.1972 0.2292 REMARK 3 9 3.1800 - 3.0600 1.00 2761 139 0.1925 0.2741 REMARK 3 10 3.0600 - 2.9600 1.00 2695 145 0.1907 0.2097 REMARK 3 11 2.9600 - 2.8600 1.00 2779 136 0.2018 0.2505 REMARK 3 12 2.8600 - 2.7800 1.00 2760 131 0.2127 0.2143 REMARK 3 13 2.7800 - 2.7100 1.00 2735 134 0.2242 0.2310 REMARK 3 14 2.7100 - 2.6400 1.00 2784 111 0.2004 0.2490 REMARK 3 15 2.6400 - 2.5800 1.00 2735 137 0.2083 0.2327 REMARK 3 16 2.5800 - 2.5300 1.00 2752 146 0.1933 0.2442 REMARK 3 17 2.5300 - 2.4800 1.00 2747 135 0.2116 0.2579 REMARK 3 18 2.4800 - 2.4300 1.00 2744 133 0.2158 0.2869 REMARK 3 19 2.4300 - 2.3900 1.00 2692 163 0.2207 0.2201 REMARK 3 20 2.3900 - 2.3500 1.00 2700 175 0.2283 0.2527 REMARK 3 21 2.3500 - 2.3100 1.00 2736 165 0.2396 0.2481 REMARK 3 22 2.3100 - 2.2700 1.00 2766 126 0.2393 0.3416 REMARK 3 23 2.2700 - 2.2400 1.00 2731 150 0.2567 0.2602 REMARK 3 24 2.2400 - 2.2100 1.00 2743 154 0.2691 0.2782 REMARK 3 25 2.2100 - 2.1800 1.00 2720 121 0.2713 0.3508 REMARK 3 26 2.1800 - 2.1500 1.00 2821 109 0.2753 0.2873 REMARK 3 27 2.1500 - 2.1200 1.00 2743 140 0.2870 0.2993 REMARK 3 28 2.1200 - 2.1000 1.00 2717 108 0.3015 0.3351 REMARK 3 29 2.1000 - 2.0700 1.00 2783 124 0.3104 0.3338 REMARK 3 30 2.0700 - 2.0500 1.00 2741 105 0.3221 0.3115 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.255 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.983 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.78 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4871 REMARK 3 ANGLE : 0.678 6608 REMARK 3 CHIRALITY : 0.044 740 REMARK 3 PLANARITY : 0.006 859 REMARK 3 DIHEDRAL : 13.918 1734 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 13 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.7679 -6.6531 -23.0781 REMARK 3 T TENSOR REMARK 3 T11: 0.2451 T22: 0.3247 REMARK 3 T33: 0.2443 T12: 0.0350 REMARK 3 T13: -0.0004 T23: 0.0219 REMARK 3 L TENSOR REMARK 3 L11: 2.3584 L22: 1.4376 REMARK 3 L33: 2.5095 L12: 0.1468 REMARK 3 L13: -0.5560 L23: 0.1806 REMARK 3 S TENSOR REMARK 3 S11: -0.0668 S12: -0.0357 S13: 0.1371 REMARK 3 S21: 0.0521 S22: -0.0177 S23: -0.0810 REMARK 3 S31: 0.0421 S32: 0.4544 S33: 0.0818 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 181 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.3085 -6.3766 -34.3435 REMARK 3 T TENSOR REMARK 3 T11: 0.2877 T22: 0.3758 REMARK 3 T33: 0.3057 T12: 0.0306 REMARK 3 T13: -0.0217 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 3.7435 L22: 0.9676 REMARK 3 L33: 0.9185 L12: 0.0292 REMARK 3 L13: 0.8195 L23: -0.2212 REMARK 3 S TENSOR REMARK 3 S11: -0.0800 S12: 0.0525 S13: 0.0986 REMARK 3 S21: -0.0685 S22: -0.0173 S23: 0.1930 REMARK 3 S31: -0.0436 S32: 0.0556 S33: 0.0983 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.9307 -6.7511 -8.2586 REMARK 3 T TENSOR REMARK 3 T11: 0.4459 T22: 0.3133 REMARK 3 T33: 0.4016 T12: 0.0239 REMARK 3 T13: 0.0656 T23: -0.0084 REMARK 3 L TENSOR REMARK 3 L11: 1.5391 L22: 2.4233 REMARK 3 L33: 3.2403 L12: 0.3197 REMARK 3 L13: -0.5101 L23: -1.2309 REMARK 3 S TENSOR REMARK 3 S11: 0.0751 S12: 0.0649 S13: 0.1458 REMARK 3 S21: -0.2303 S22: -0.1560 S23: 0.4023 REMARK 3 S31: 0.4286 S32: 0.1338 S33: 0.0631 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 76 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.0358 -17.7582 7.5843 REMARK 3 T TENSOR REMARK 3 T11: 0.6524 T22: 0.5230 REMARK 3 T33: 0.6225 T12: -0.1282 REMARK 3 T13: 0.1713 T23: 0.0839 REMARK 3 L TENSOR REMARK 3 L11: 1.9667 L22: 2.5274 REMARK 3 L33: 2.6710 L12: 0.2707 REMARK 3 L13: 0.7578 L23: -0.2318 REMARK 3 S TENSOR REMARK 3 S11: -0.0255 S12: -0.5447 S13: -0.9403 REMARK 3 S21: 0.5410 S22: 0.0498 S23: 0.6391 REMARK 3 S31: 0.7639 S32: -0.8122 S33: 0.0445 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 77 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.1791 -12.8860 12.5523 REMARK 3 T TENSOR REMARK 3 T11: 0.6057 T22: 0.5139 REMARK 3 T33: 0.4363 T12: 0.0651 REMARK 3 T13: 0.1273 T23: 0.1250 REMARK 3 L TENSOR REMARK 3 L11: 4.1707 L22: 4.5335 REMARK 3 L33: 0.6659 L12: -4.0085 REMARK 3 L13: 1.6291 L23: -1.4637 REMARK 3 S TENSOR REMARK 3 S11: -0.3571 S12: -0.5800 S13: -0.0746 REMARK 3 S21: 0.2341 S22: 0.2301 S23: -0.0123 REMARK 3 S31: 0.5278 S32: -0.3747 S33: 0.1196 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 92 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.4697 -3.5568 3.7619 REMARK 3 T TENSOR REMARK 3 T11: 0.4080 T22: 0.4222 REMARK 3 T33: 0.3432 T12: 0.0087 REMARK 3 T13: 0.0507 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 2.9377 L22: 1.7344 REMARK 3 L33: 2.6162 L12: -0.9146 REMARK 3 L13: 0.3310 L23: -0.6085 REMARK 3 S TENSOR REMARK 3 S11: -0.0466 S12: -0.2291 S13: 0.1338 REMARK 3 S21: 0.0258 S22: -0.1480 S23: -0.0582 REMARK 3 S31: 0.0102 S32: 0.0870 S33: 0.1621 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 111 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.3715 -6.8533 -9.0164 REMARK 3 T TENSOR REMARK 3 T11: 0.3752 T22: 0.3568 REMARK 3 T33: 0.3981 T12: -0.0351 REMARK 3 T13: 0.0349 T23: -0.0052 REMARK 3 L TENSOR REMARK 3 L11: 1.8810 L22: 2.7764 REMARK 3 L33: 2.3388 L12: -0.5914 REMARK 3 L13: 0.0957 L23: 0.2247 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: -0.1341 S13: -0.1707 REMARK 3 S21: -0.0527 S22: 0.1426 S23: 0.1712 REMARK 3 S31: 0.2788 S32: -0.4186 S33: -0.1075 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 130 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.5930 -1.7840 -7.9048 REMARK 3 T TENSOR REMARK 3 T11: 0.4770 T22: 0.5937 REMARK 3 T33: 0.4798 T12: -0.0124 REMARK 3 T13: -0.0027 T23: -0.0072 REMARK 3 L TENSOR REMARK 3 L11: 3.1220 L22: 3.8673 REMARK 3 L33: 2.9749 L12: -0.3187 REMARK 3 L13: 0.0369 L23: -1.6491 REMARK 3 S TENSOR REMARK 3 S11: -0.0963 S12: 0.3225 S13: -0.2103 REMARK 3 S21: -0.3699 S22: 0.4235 S23: 0.0177 REMARK 3 S31: 0.2772 S32: -1.0276 S33: -0.2282 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 145 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.9335 -2.9280 -1.5357 REMARK 3 T TENSOR REMARK 3 T11: 0.4220 T22: 0.4209 REMARK 3 T33: 0.3706 T12: 0.0025 REMARK 3 T13: 0.0462 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 2.6778 L22: 1.7069 REMARK 3 L33: 2.8107 L12: -0.3808 REMARK 3 L13: -0.0746 L23: -0.0547 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: -0.1658 S13: -0.0133 REMARK 3 S21: -0.0439 S22: -0.1307 S23: 0.0618 REMARK 3 S31: -0.1107 S32: -0.2705 S33: 0.1164 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6511 6.9009 -8.0060 REMARK 3 T TENSOR REMARK 3 T11: 0.3742 T22: 0.4538 REMARK 3 T33: 0.4176 T12: 0.0391 REMARK 3 T13: 0.0053 T23: 0.0062 REMARK 3 L TENSOR REMARK 3 L11: 1.1679 L22: 1.0965 REMARK 3 L33: 2.7205 L12: -0.1126 REMARK 3 L13: -0.2501 L23: -0.8284 REMARK 3 S TENSOR REMARK 3 S11: -0.0382 S12: 0.1388 S13: -0.1130 REMARK 3 S21: -0.0449 S22: 0.2638 S23: 0.2529 REMARK 3 S31: -0.0519 S32: -0.7690 S33: -0.1203 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 214 THROUGH 237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.3638 24.7394 -19.1996 REMARK 3 T TENSOR REMARK 3 T11: 0.7730 T22: 0.5210 REMARK 3 T33: 0.4621 T12: 0.3308 REMARK 3 T13: 0.0648 T23: 0.0923 REMARK 3 L TENSOR REMARK 3 L11: 2.5605 L22: 1.2337 REMARK 3 L33: 1.4987 L12: 0.6439 REMARK 3 L13: -0.7519 L23: 0.7713 REMARK 3 S TENSOR REMARK 3 S11: -0.3406 S12: 0.0550 S13: 0.2386 REMARK 3 S21: 0.5422 S22: 0.2369 S23: 0.3793 REMARK 3 S31: -0.7964 S32: -0.3719 S33: 0.0220 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 238 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5025 22.5310 -14.4467 REMARK 3 T TENSOR REMARK 3 T11: 0.8446 T22: 0.4107 REMARK 3 T33: 0.4047 T12: 0.0945 REMARK 3 T13: -0.0521 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 2.7756 L22: 2.6990 REMARK 3 L33: 4.1337 L12: 0.0849 REMARK 3 L13: 0.3549 L23: -0.4457 REMARK 3 S TENSOR REMARK 3 S11: -0.1515 S12: 0.0818 S13: -0.0823 REMARK 3 S21: 0.8192 S22: 0.0741 S23: 0.2033 REMARK 3 S31: -1.3790 S32: -0.2897 S33: 0.0984 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 275 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.0213 10.4547 -18.4124 REMARK 3 T TENSOR REMARK 3 T11: 0.5531 T22: 0.4098 REMARK 3 T33: 0.4384 T12: 0.0152 REMARK 3 T13: 0.0226 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 4.8937 L22: 2.1428 REMARK 3 L33: 2.4683 L12: 0.3245 REMARK 3 L13: 0.0415 L23: 0.2088 REMARK 3 S TENSOR REMARK 3 S11: -0.0922 S12: 0.2552 S13: -0.8873 REMARK 3 S21: -0.3212 S22: 0.0073 S23: -0.0041 REMARK 3 S31: -0.1267 S32: 0.2533 S33: 0.0836 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BFB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9719 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 91004 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 72.450 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.26400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BB2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12M ALCOHOLS (1,6-HEXANEDIOL; 1 REMARK 280 -BUTANOL; 1,2-PROPANEDIOL; 2-PROPANOL; 1,4-BUTANEDIOL; 1,3- REMARK 280 PROPANEDIOL), 0.1M HEPES/MOPS PH 7.5, 20% V/V PEG 500 MME, 10 % REMARK 280 W/V PEG 20000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.86950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.29850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.22750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.29850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.86950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.22750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4530 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 302 REMARK 465 VAL A 303 REMARK 465 THR A 304 REMARK 465 PHE A 305 REMARK 465 GLN A 306 REMARK 465 GLN B 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -128.83 52.64 REMARK 500 ASN A 84 -122.80 51.19 REMARK 500 TYR A 154 -109.86 56.03 REMARK 500 PRO A 184 38.18 -88.29 REMARK 500 ASN A 214 9.02 -69.20 REMARK 500 CYS A 300 -76.90 -110.91 REMARK 500 ASP B 33 -131.46 51.68 REMARK 500 ASN B 51 80.23 -152.58 REMARK 500 ASN B 84 -123.82 53.74 REMARK 500 TYR B 154 -110.62 57.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 9JT A 401 REMARK 610 9JT A 403 REMARK 610 9JT B 1002 REMARK 610 9JT B 1005 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 408 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 221 O REMARK 620 2 ASN A 221 OD1 65.0 REMARK 620 3 PHE A 223 O 98.1 77.0 REMARK 620 4 ASP A 263 O 170.8 117.4 91.1 REMARK 620 5 ASP A 263 OD1 90.5 142.4 79.0 91.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B1006 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 221 O REMARK 620 2 ASN B 221 OD1 77.0 REMARK 620 3 PHE B 223 O 114.2 105.0 REMARK 620 4 ASP B 263 O 153.3 114.4 87.2 REMARK 620 5 ASP B 263 OD1 99.4 163.6 91.2 62.6 REMARK 620 6 HOH B1106 O 82.2 94.2 156.9 73.1 69.4 REMARK 620 N 1 2 3 4 5 DBREF 7BFB A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 DBREF 7BFB B 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN HET 9JT A 401 12 HET 9JT A 402 1 HET 9JT A 403 11 HET EDO A 404 10 HET EDO A 405 10 HET EDO A 406 10 HET EDO A 407 10 HET NA A 408 1 HET EDO B1001 10 HET 9JT B1002 11 HET EDO B1003 10 HET EDO B1004 10 HET 9JT B1005 13 HET NA B1006 1 HETNAM 9JT N-PHENYL-2-SELANYLBENZAMIDE HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN 9JT ~{N}-PHENYL-2-SELANYL-BENZAMIDE; EBSELEN, BOUND FORM HETSYN EDO ETHYLENE GLYCOL FORMUL 3 9JT 5(C13 H11 N O SE) FORMUL 6 EDO 7(C2 H6 O2) FORMUL 10 NA 2(NA 1+) FORMUL 17 HOH *134(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 ASN A 53 ARG A 60 1 8 HELIX 4 AA4 SER A 62 HIS A 64 5 3 HELIX 5 AA5 ILE A 200 ASN A 214 1 15 HELIX 6 AA6 THR A 226 LYS A 236 1 11 HELIX 7 AA7 THR A 243 LEU A 250 1 8 HELIX 8 AA8 LEU A 250 GLY A 258 1 9 HELIX 9 AA9 ALA A 260 GLY A 275 1 16 HELIX 10 AB1 THR A 292 CYS A 300 1 9 HELIX 11 AB2 SER B 10 GLY B 15 1 6 HELIX 12 AB3 HIS B 41 CYS B 44 5 4 HELIX 13 AB4 THR B 45 LEU B 50 1 6 HELIX 14 AB5 ASN B 53 LYS B 61 1 9 HELIX 15 AB6 SER B 62 HIS B 64 5 3 HELIX 16 AB7 ILE B 200 ASN B 214 1 15 HELIX 17 AB8 THR B 226 TYR B 237 1 12 HELIX 18 AB9 THR B 243 LEU B 250 1 8 HELIX 19 AC1 LEU B 250 GLY B 258 1 9 HELIX 20 AC2 ALA B 260 GLY B 275 1 16 HELIX 21 AC3 THR B 292 GLY B 302 1 11 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O VAL A 35 N LEU A 32 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 5 LYS A 100 PHE A 103 0 SHEET 2 AA2 5 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA2 5 VAL A 148 ASP A 153 -1 N GLY A 149 O TYR A 161 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 LYS A 100 PHE A 103 0 SHEET 2 AA3 3 CYS A 156 GLU A 166 1 O VAL A 157 N LYS A 100 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 PHE B 66 ALA B 70 -1 N ALA B 70 O VAL B 73 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O GLY B 29 N VAL B 18 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O TYR B 37 N LEU B 30 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N SER B 81 O LYS B 88 SHEET 1 AA5 5 TYR B 101 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASP B 153 O CYS B 156 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O CYS B 128 N PHE B 112 SHEET 1 AA6 3 TYR B 101 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 LINK SG CYS A 44 SE1 9JT A 401 1555 1555 2.25 LINK SG CYS A 145 SE1 9JT A 402 1555 1555 2.24 LINK SG CYS A 156 SE1 9JT A 403 1555 1555 2.25 LINK SG CYS B 156 SE1 9JT B1002 1555 1555 2.26 LINK O ASN A 221 NA NA A 408 1555 1555 2.75 LINK OD1 ASN A 221 NA NA A 408 1555 1555 2.54 LINK O PHE A 223 NA NA A 408 1555 1555 2.62 LINK O ASP A 263 NA NA A 408 1555 1555 2.66 LINK OD1 ASP A 263 NA NA A 408 1555 1555 2.44 LINK O ASN B 221 NA NA B1006 1555 1555 2.51 LINK OD1 ASN B 221 NA NA B1006 1555 1555 2.17 LINK O PHE B 223 NA NA B1006 1555 1555 2.44 LINK O ASP B 263 NA NA B1006 1555 1555 2.83 LINK OD1 ASP B 263 NA NA B1006 1555 1555 2.09 LINK NA NA B1006 O HOH B1106 1555 1555 2.55 CRYST1 67.739 100.455 104.597 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009561 0.00000