HEADER RIBOSOMAL PROTEIN 02-JAN-21 7BFE TITLE CIRCULAR PERMUTANT OF RIBOSOMAL PROTEIN S6, P54-55 TRUNCATED, L21A TITLE 2 MUTANT. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S6,30S RIBOSOMAL PROTEIN S6; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: TS9,TS9; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS (STRAIN HB8 / ATCC 27634 / SOURCE 3 DSM 579); SOURCE 4 ORGANISM_TAXID: 300852; SOURCE 5 STRAIN: HB8 / ATCC 27634 / DSM 579; SOURCE 6 GENE: RPSF, TTHA0245; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 511693 KEYWDS CIRCULAR PERMUTANT, NATIVE STACKING, , DESIGNED AMYLOID FIBRIL, KEYWDS 2 RIBOSOMAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,D.T.LOGAN,M.OLIVEBERG REVDAT 2 31-JAN-24 7BFE 1 REMARK REVDAT 1 13-JUL-22 7BFE 0 JRNL AUTH H.WANG,D.T.LOGAN,M.OLIVEBERG JRNL TITL CIRCULAR PERMUTANT OF RIBOSOMAL PROTEIN S6 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0238 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 64.65 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 40628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.235 REMARK 3 R VALUE (WORKING SET) : 0.233 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2156 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2912 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.3560 REMARK 3 BIN FREE R VALUE SET COUNT : 169 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4162 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 67 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.50000 REMARK 3 B22 (A**2) : 1.02000 REMARK 3 B33 (A**2) : -3.53000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.174 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.442 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.920 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4216 ; 0.016 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 4005 ; 0.002 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5702 ; 1.945 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9216 ; 1.374 ; 1.577 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 501 ; 7.657 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 298 ;34.737 ;21.141 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 773 ;17.174 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 57 ;17.753 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 519 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4777 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 930 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -37 A 45 REMARK 3 ORIGIN FOR THE GROUP (A): -15.1389 -10.2262 10.0474 REMARK 3 T TENSOR REMARK 3 T11: 0.1444 T22: 0.1975 REMARK 3 T33: 0.0279 T12: 0.0087 REMARK 3 T13: 0.0069 T23: 0.0126 REMARK 3 L TENSOR REMARK 3 L11: 0.8202 L22: 0.4887 REMARK 3 L33: 0.7945 L12: -0.0872 REMARK 3 L13: 0.7561 L23: 0.0782 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.0300 S13: -0.0488 REMARK 3 S21: -0.0591 S22: 0.0413 S23: 0.0116 REMARK 3 S31: -0.0526 S32: 0.0485 S33: -0.0541 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -39 B 46 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4250 -3.5869 29.5807 REMARK 3 T TENSOR REMARK 3 T11: 0.1501 T22: 0.1699 REMARK 3 T33: 0.0530 T12: -0.0005 REMARK 3 T13: -0.0028 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.6025 L22: 1.0108 REMARK 3 L33: 1.1177 L12: -0.3591 REMARK 3 L13: 0.3066 L23: -0.1326 REMARK 3 S TENSOR REMARK 3 S11: 0.0151 S12: 0.0549 S13: 0.0275 REMARK 3 S21: -0.0203 S22: -0.1280 S23: -0.1440 REMARK 3 S31: -0.0986 S32: 0.0799 S33: 0.1129 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C -38 C 46 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7897 5.2096 84.0174 REMARK 3 T TENSOR REMARK 3 T11: 0.1762 T22: 0.1872 REMARK 3 T33: 0.0183 T12: -0.0378 REMARK 3 T13: -0.0073 T23: -0.0336 REMARK 3 L TENSOR REMARK 3 L11: 0.8487 L22: 1.3076 REMARK 3 L33: 0.1811 L12: -0.1052 REMARK 3 L13: -0.2933 L23: -0.2446 REMARK 3 S TENSOR REMARK 3 S11: 0.0026 S12: 0.0427 S13: 0.0303 REMARK 3 S21: -0.0564 S22: 0.0265 S23: 0.0647 REMARK 3 S31: 0.0467 S32: 0.0145 S33: -0.0291 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D -39 D 45 REMARK 3 ORIGIN FOR THE GROUP (A): -10.5035 -5.9310 66.5794 REMARK 3 T TENSOR REMARK 3 T11: 0.2884 T22: 0.1103 REMARK 3 T33: 0.0479 T12: -0.0089 REMARK 3 T13: 0.0220 T23: -0.0337 REMARK 3 L TENSOR REMARK 3 L11: 1.4943 L22: 4.8259 REMARK 3 L33: 0.2022 L12: 0.7252 REMARK 3 L13: 0.3249 L23: -0.0790 REMARK 3 S TENSOR REMARK 3 S11: 0.0018 S12: -0.0739 S13: -0.1872 REMARK 3 S21: -0.3868 S22: 0.0740 S23: -0.2330 REMARK 3 S31: -0.0209 S32: 0.0290 S33: -0.0757 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E -37 E 45 REMARK 3 ORIGIN FOR THE GROUP (A): -21.1953 -3.5535 47.8333 REMARK 3 T TENSOR REMARK 3 T11: 0.2795 T22: 0.1207 REMARK 3 T33: 0.0180 T12: 0.0326 REMARK 3 T13: 0.0348 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 1.3357 L22: 2.5918 REMARK 3 L33: 0.6286 L12: -0.0829 REMARK 3 L13: 0.8292 L23: -0.5878 REMARK 3 S TENSOR REMARK 3 S11: -0.1105 S12: -0.0925 S13: -0.0955 REMARK 3 S21: 0.3615 S22: 0.2103 S23: 0.1583 REMARK 3 S31: -0.1373 S32: -0.1172 S33: -0.0998 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : F -38 F 46 REMARK 3 ORIGIN FOR THE GROUP (A): -11.4632 -1.8022 103.9300 REMARK 3 T TENSOR REMARK 3 T11: 0.1627 T22: 0.1708 REMARK 3 T33: 0.0405 T12: -0.0083 REMARK 3 T13: 0.0167 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 1.5785 L22: 1.0074 REMARK 3 L33: 0.4353 L12: 0.5207 REMARK 3 L13: 0.0874 L23: -0.3065 REMARK 3 S TENSOR REMARK 3 S11: -0.0383 S12: 0.1075 S13: -0.1042 REMARK 3 S21: 0.0380 S22: 0.0596 S23: 0.0818 REMARK 3 S31: -0.0175 S32: 0.1102 S33: -0.0214 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 7BFE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 04-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113264. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-SEP-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PETRA III, EMBL C/O DESY REMARK 200 BEAMLINE : P13 (MX1) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.6.2 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42847 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 64.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 2.900 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.40400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1RIS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM IODIDE 0.1 M BIS-TRIS REMARK 280 PROPANE 20% W/V PEG 3350, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.50000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 110.97500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.74500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 110.97500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.50000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.74500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26120 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLN A 1 REMARK 465 ARG A 85 REMARK 465 MET C 0 REMARK 465 ARG D 85 REMARK 465 MET E 0 REMARK 465 GLN E 1 REMARK 465 ARG E 85 REMARK 465 MET F 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 I IOD A 101 O HOH A 214 1.79 REMARK 500 NH1 ARG C 31 OE1 GLU F 81 1.92 REMARK 500 I IOD D 101 O HOH D 201 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY D 73 NH2 ARG E 75 3445 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 22 CB GLU A 22 CG 0.182 REMARK 500 GLU A 22 CG GLU A 22 CD 0.153 REMARK 500 GLU A 22 CD GLU A 22 OE1 0.130 REMARK 500 ASP E 14 CG ASP E 14 OD1 0.508 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 22 CA - CB - CG ANGL. DEV. = 15.4 DEGREES REMARK 500 GLU A 22 CB - CG - CD ANGL. DEV. = 16.9 DEGREES REMARK 500 GLU A 22 OE1 - CD - OE2 ANGL. DEV. = -9.4 DEGREES REMARK 500 GLU A 22 CG - CD - OE1 ANGL. DEV. = 13.9 DEGREES REMARK 500 ASN B 17 CB - CA - C ANGL. DEV. = -13.4 DEGREES REMARK 500 GLU E 10 CB - CA - C ANGL. DEV. = 13.7 DEGREES REMARK 500 ASP E 14 OD1 - CG - OD2 ANGL. DEV. = 13.6 DEGREES REMARK 500 ASP E 14 CB - CG - OD1 ANGL. DEV. = -5.7 DEGREES REMARK 500 ASP E 14 CB - CG - OD2 ANGL. DEV. = -8.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO D 51 2.87 -64.39 REMARK 500 GLU E 13 -59.76 -25.82 REMARK 500 SER F 37 -169.61 -74.83 REMARK 500 ASN F 52 54.40 -101.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD D 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IOD F 101 DBREF 7BFE A 1 35 UNP Q5SLP8 RS6_THET8 57 91 DBREF 7BFE A 42 85 UNP Q5SLP8 RS6_THET8 3 46 DBREF 7BFE B 1 35 UNP Q5SLP8 RS6_THET8 57 91 DBREF 7BFE B 42 85 UNP Q5SLP8 RS6_THET8 3 46 DBREF 7BFE C 1 35 UNP Q5SLP8 RS6_THET8 57 91 DBREF 7BFE C 42 85 UNP Q5SLP8 RS6_THET8 3 46 DBREF 7BFE D 1 35 UNP Q5SLP8 RS6_THET8 57 91 DBREF 7BFE D 42 85 UNP Q5SLP8 RS6_THET8 3 46 DBREF 7BFE E 1 35 UNP Q5SLP8 RS6_THET8 57 91 DBREF 7BFE E 42 85 UNP Q5SLP8 RS6_THET8 3 46 DBREF 7BFE F 1 35 UNP Q5SLP8 RS6_THET8 57 91 DBREF 7BFE F 42 85 UNP Q5SLP8 RS6_THET8 3 46 SEQADV 7BFE MET A 0 UNP Q5SLP8 INITIATING METHIONINE SEQADV 7BFE ALA A 36 UNP Q5SLP8 LINKER SEQADV 7BFE SER A 37 UNP Q5SLP8 LINKER SEQADV 7BFE THR A 38 UNP Q5SLP8 LINKER SEQADV 7BFE THR A 39 UNP Q5SLP8 LINKER SEQADV 7BFE PRO A 40 UNP Q5SLP8 LINKER SEQADV 7BFE GLY A 41 UNP Q5SLP8 LINKER SEQADV 7BFE ALA A 60 UNP Q5SLP8 LEU 21 ENGINEERED MUTATION SEQADV 7BFE MET B 0 UNP Q5SLP8 INITIATING METHIONINE SEQADV 7BFE ALA B 36 UNP Q5SLP8 LINKER SEQADV 7BFE SER B 37 UNP Q5SLP8 LINKER SEQADV 7BFE THR B 38 UNP Q5SLP8 LINKER SEQADV 7BFE THR B 39 UNP Q5SLP8 LINKER SEQADV 7BFE PRO B 40 UNP Q5SLP8 LINKER SEQADV 7BFE GLY B 41 UNP Q5SLP8 LINKER SEQADV 7BFE ALA B 60 UNP Q5SLP8 LEU 21 ENGINEERED MUTATION SEQADV 7BFE MET C 0 UNP Q5SLP8 INITIATING METHIONINE SEQADV 7BFE ALA C 36 UNP Q5SLP8 LINKER SEQADV 7BFE SER C 37 UNP Q5SLP8 LINKER SEQADV 7BFE THR C 38 UNP Q5SLP8 LINKER SEQADV 7BFE THR C 39 UNP Q5SLP8 LINKER SEQADV 7BFE PRO C 40 UNP Q5SLP8 LINKER SEQADV 7BFE GLY C 41 UNP Q5SLP8 LINKER SEQADV 7BFE ALA C 60 UNP Q5SLP8 LEU 21 ENGINEERED MUTATION SEQADV 7BFE MET D 0 UNP Q5SLP8 INITIATING METHIONINE SEQADV 7BFE ALA D 36 UNP Q5SLP8 LINKER SEQADV 7BFE SER D 37 UNP Q5SLP8 LINKER SEQADV 7BFE THR D 38 UNP Q5SLP8 LINKER SEQADV 7BFE THR D 39 UNP Q5SLP8 LINKER SEQADV 7BFE PRO D 40 UNP Q5SLP8 LINKER SEQADV 7BFE GLY D 41 UNP Q5SLP8 LINKER SEQADV 7BFE ALA D 60 UNP Q5SLP8 LEU 21 ENGINEERED MUTATION SEQADV 7BFE MET E 0 UNP Q5SLP8 INITIATING METHIONINE SEQADV 7BFE ALA E 36 UNP Q5SLP8 LINKER SEQADV 7BFE SER E 37 UNP Q5SLP8 LINKER SEQADV 7BFE THR E 38 UNP Q5SLP8 LINKER SEQADV 7BFE THR E 39 UNP Q5SLP8 LINKER SEQADV 7BFE PRO E 40 UNP Q5SLP8 LINKER SEQADV 7BFE GLY E 41 UNP Q5SLP8 LINKER SEQADV 7BFE ALA E 60 UNP Q5SLP8 LEU 21 ENGINEERED MUTATION SEQADV 7BFE MET F 0 UNP Q5SLP8 INITIATING METHIONINE SEQADV 7BFE ALA F 36 UNP Q5SLP8 LINKER SEQADV 7BFE SER F 37 UNP Q5SLP8 LINKER SEQADV 7BFE THR F 38 UNP Q5SLP8 LINKER SEQADV 7BFE THR F 39 UNP Q5SLP8 LINKER SEQADV 7BFE PRO F 40 UNP Q5SLP8 LINKER SEQADV 7BFE GLY F 41 UNP Q5SLP8 LINKER SEQADV 7BFE ALA F 60 UNP Q5SLP8 LEU 21 ENGINEERED MUTATION SEQRES 1 A 86 MET GLN GLY TYR PHE LEU TRP TYR GLN VAL GLU MET PRO SEQRES 2 A 86 GLU ASP ARG VAL ASN ASP LEU ALA ARG GLU LEU ARG ILE SEQRES 3 A 86 ARG ASP ASN VAL ARG ARG VAL MET VAL VAL ALA SER THR SEQRES 4 A 86 THR PRO GLY ARG TYR GLU VAL ASN ILE VAL LEU ASN PRO SEQRES 5 A 86 ASN LEU ASP GLN SER GLN LEU ALA ALA GLU LYS GLU ILE SEQRES 6 A 86 ILE GLN ARG ALA LEU GLU ASN TYR GLY ALA ARG VAL GLU SEQRES 7 A 86 LYS VAL GLU GLU LEU GLY LEU ARG SEQRES 1 B 86 MET GLN GLY TYR PHE LEU TRP TYR GLN VAL GLU MET PRO SEQRES 2 B 86 GLU ASP ARG VAL ASN ASP LEU ALA ARG GLU LEU ARG ILE SEQRES 3 B 86 ARG ASP ASN VAL ARG ARG VAL MET VAL VAL ALA SER THR SEQRES 4 B 86 THR PRO GLY ARG TYR GLU VAL ASN ILE VAL LEU ASN PRO SEQRES 5 B 86 ASN LEU ASP GLN SER GLN LEU ALA ALA GLU LYS GLU ILE SEQRES 6 B 86 ILE GLN ARG ALA LEU GLU ASN TYR GLY ALA ARG VAL GLU SEQRES 7 B 86 LYS VAL GLU GLU LEU GLY LEU ARG SEQRES 1 C 86 MET GLN GLY TYR PHE LEU TRP TYR GLN VAL GLU MET PRO SEQRES 2 C 86 GLU ASP ARG VAL ASN ASP LEU ALA ARG GLU LEU ARG ILE SEQRES 3 C 86 ARG ASP ASN VAL ARG ARG VAL MET VAL VAL ALA SER THR SEQRES 4 C 86 THR PRO GLY ARG TYR GLU VAL ASN ILE VAL LEU ASN PRO SEQRES 5 C 86 ASN LEU ASP GLN SER GLN LEU ALA ALA GLU LYS GLU ILE SEQRES 6 C 86 ILE GLN ARG ALA LEU GLU ASN TYR GLY ALA ARG VAL GLU SEQRES 7 C 86 LYS VAL GLU GLU LEU GLY LEU ARG SEQRES 1 D 86 MET GLN GLY TYR PHE LEU TRP TYR GLN VAL GLU MET PRO SEQRES 2 D 86 GLU ASP ARG VAL ASN ASP LEU ALA ARG GLU LEU ARG ILE SEQRES 3 D 86 ARG ASP ASN VAL ARG ARG VAL MET VAL VAL ALA SER THR SEQRES 4 D 86 THR PRO GLY ARG TYR GLU VAL ASN ILE VAL LEU ASN PRO SEQRES 5 D 86 ASN LEU ASP GLN SER GLN LEU ALA ALA GLU LYS GLU ILE SEQRES 6 D 86 ILE GLN ARG ALA LEU GLU ASN TYR GLY ALA ARG VAL GLU SEQRES 7 D 86 LYS VAL GLU GLU LEU GLY LEU ARG SEQRES 1 E 86 MET GLN GLY TYR PHE LEU TRP TYR GLN VAL GLU MET PRO SEQRES 2 E 86 GLU ASP ARG VAL ASN ASP LEU ALA ARG GLU LEU ARG ILE SEQRES 3 E 86 ARG ASP ASN VAL ARG ARG VAL MET VAL VAL ALA SER THR SEQRES 4 E 86 THR PRO GLY ARG TYR GLU VAL ASN ILE VAL LEU ASN PRO SEQRES 5 E 86 ASN LEU ASP GLN SER GLN LEU ALA ALA GLU LYS GLU ILE SEQRES 6 E 86 ILE GLN ARG ALA LEU GLU ASN TYR GLY ALA ARG VAL GLU SEQRES 7 E 86 LYS VAL GLU GLU LEU GLY LEU ARG SEQRES 1 F 86 MET GLN GLY TYR PHE LEU TRP TYR GLN VAL GLU MET PRO SEQRES 2 F 86 GLU ASP ARG VAL ASN ASP LEU ALA ARG GLU LEU ARG ILE SEQRES 3 F 86 ARG ASP ASN VAL ARG ARG VAL MET VAL VAL ALA SER THR SEQRES 4 F 86 THR PRO GLY ARG TYR GLU VAL ASN ILE VAL LEU ASN PRO SEQRES 5 F 86 ASN LEU ASP GLN SER GLN LEU ALA ALA GLU LYS GLU ILE SEQRES 6 F 86 ILE GLN ARG ALA LEU GLU ASN TYR GLY ALA ARG VAL GLU SEQRES 7 F 86 LYS VAL GLU GLU LEU GLY LEU ARG HET IOD A 101 1 HET IOD B 101 1 HET IOD C 101 1 HET IOD D 101 1 HET IOD E 101 1 HET IOD F 101 1 HETNAM IOD IODIDE ION FORMUL 7 IOD 6(I 1-) FORMUL 13 HOH *67(H2 O) HELIX 1 AA1 PRO A 12 ASP A 14 5 3 HELIX 2 AA2 ARG A 15 ILE A 25 1 11 HELIX 3 AA3 ASP A 54 TYR A 72 1 19 HELIX 4 AA4 PRO B 12 ILE B 25 1 14 HELIX 5 AA5 ASP B 54 TYR B 72 1 19 HELIX 6 AA6 PRO C 12 ASP C 14 5 3 HELIX 7 AA7 ARG C 15 ILE C 25 1 11 HELIX 8 AA8 ASP C 54 TYR C 72 1 19 HELIX 9 AA9 PRO D 12 ILE D 25 1 14 HELIX 10 AB1 ASP D 54 TYR D 72 1 19 HELIX 11 AB2 PRO E 12 ASP E 14 5 3 HELIX 12 AB3 ARG E 15 ILE E 25 1 11 HELIX 13 AB4 ASP E 54 TYR E 72 1 19 HELIX 14 AB5 PRO F 12 ASP F 14 5 3 HELIX 15 AB6 ARG F 15 ILE F 25 1 11 HELIX 16 AB7 ASP F 54 TYR F 72 1 19 SHEET 1 AA124 ARG A 75 LEU A 82 0 SHEET 2 AA124 PHE A 4 GLU A 10 -1 N GLN A 8 O GLU A 77 SHEET 3 AA124 ARG A 42 LEU A 49 -1 O ILE A 47 N LEU A 5 SHEET 4 AA124 VAL A 29 ALA A 36 -1 N VAL A 35 O GLU A 44 SHEET 5 AA124 ARG B 75 GLY B 83 1 O GLY B 83 N VAL A 34 SHEET 6 AA124 PHE B 4 GLU B 10 -1 N PHE B 4 O LEU B 82 SHEET 7 AA124 ARG B 42 LEU B 49 -1 O ILE B 47 N LEU B 5 SHEET 8 AA124 VAL B 29 ALA B 36 -1 N MET B 33 O ASN B 46 SHEET 9 AA124 ARG E 75 GLY E 83 1 O GLU E 81 N VAL B 34 SHEET 10 AA124 TYR E 3 GLU E 10 -1 N GLN E 8 O LYS E 78 SHEET 11 AA124 TYR E 43 LEU E 49 -1 O TYR E 43 N VAL E 9 SHEET 12 AA124 VAL E 29 ALA E 36 -1 N MET E 33 O ASN E 46 SHEET 13 AA124 ARG D 75 GLY D 83 1 N GLU D 81 O VAL E 34 SHEET 14 AA124 TYR D 3 GLU D 10 -1 N GLN D 8 O GLU D 77 SHEET 15 AA124 ARG D 42 LEU D 49 -1 O ILE D 47 N LEU D 5 SHEET 16 AA124 VAL D 29 ALA D 36 -1 N MET D 33 O ASN D 46 SHEET 17 AA124 ARG C 75 GLY C 83 1 N GLU C 81 O VAL D 32 SHEET 18 AA124 PHE C 4 GLU C 10 -1 N GLU C 10 O ARG C 75 SHEET 19 AA124 ARG C 42 LEU C 49 -1 O ILE C 47 N LEU C 5 SHEET 20 AA124 VAL C 29 ALA C 36 -1 N MET C 33 O ASN C 46 SHEET 21 AA124 ARG F 75 GLY F 83 1 O GLU F 81 N VAL C 34 SHEET 22 AA124 PHE F 4 GLU F 10 -1 N GLN F 8 O GLU F 77 SHEET 23 AA124 ARG F 42 LEU F 49 -1 O VAL F 45 N TYR F 7 SHEET 24 AA124 VAL F 29 ALA F 36 -1 N ARG F 30 O VAL F 48 SITE 1 AC1 2 ARG A 31 HOH A 214 SITE 1 AC2 1 ARG B 31 SITE 1 AC3 1 ARG C 31 SITE 1 AC4 2 ARG D 31 HOH D 201 SITE 1 AC5 2 ARG F 31 MET F 33 CRYST1 39.000 67.490 221.950 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025641 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004506 0.00000