HEADER VIRAL PROTEIN 08-JAN-21 7BGP TITLE CRYSTAL STRUCTURE OF MG-132 COVALENTLY BOUND TO THE MAIN PROTEASE TITLE 2 (3CLPRO/MPRO) OF SARS-COV-2 IN ABSENCE OF DTT. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3C-LIKE PROTEINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3CL-PRO,3CLP,MAIN PROTEASE,MPRO,NON-STRUCTURAL PROTEIN 5, COMPND 5 NSP5,SARS CORONAVIRUS MAIN PROTEINASE; COMPND 6 EC: 3.4.22.69; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV, SARS-COV-2; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS SARS-COV-2, MPRO, 3CLPRO, EXSCALATE4COV, DRUG DISCOVERY, ELETTRA, KEYWDS 2 VIRAL PROTEIN, MG-132 EXPDTA X-RAY DIFFRACTION AUTHOR E.COSTANZI,N.DEMITRI,B.GIABBAI,P.STORICI REVDAT 3 31-JAN-24 7BGP 1 REMARK REVDAT 2 24-NOV-21 7BGP 1 COMPND SOURCE JRNL REVDAT 1 03-MAR-21 7BGP 0 JRNL AUTH E.COSTANZI,M.KUZIKOV,F.ESPOSITO,S.ALBANI,N.DEMITRI, JRNL AUTH 2 B.GIABBAI,M.CAMASTA,E.TRAMONTANO,G.ROSSETTI,A.ZALIANI, JRNL AUTH 3 P.STORICI JRNL TITL STRUCTURAL AND BIOCHEMICAL ANALYSIS OF THE DUAL INHIBITION JRNL TITL 2 OF MG-132 AGAINST SARS-COV-2 MAIN PROTEASE (MPRO/3CLPRO) AND JRNL TITL 3 HUMAN CATHEPSIN-L. JRNL REF INT J MOL SCI V. 22 2021 JRNL REFN ESSN 1422-0067 JRNL PMID 34769210 JRNL DOI 10.3390/IJMS222111779 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.19_4085 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 80513 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 3988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.9400 - 5.1000 0.98 2932 112 0.1722 0.1790 REMARK 3 2 5.1000 - 4.0500 0.98 2773 151 0.1237 0.1405 REMARK 3 3 4.0500 - 3.5400 0.99 2776 129 0.1422 0.1906 REMARK 3 4 3.5400 - 3.2100 1.00 2768 158 0.1602 0.1905 REMARK 3 5 3.2100 - 2.9800 1.00 2754 154 0.1697 0.2074 REMARK 3 6 2.9800 - 2.8100 1.00 2738 137 0.1744 0.1844 REMARK 3 7 2.8100 - 2.6700 1.00 2742 148 0.1697 0.2266 REMARK 3 8 2.6700 - 2.5500 1.00 2768 122 0.1718 0.2022 REMARK 3 9 2.5500 - 2.4500 1.00 2733 149 0.1616 0.1931 REMARK 3 10 2.4500 - 2.3700 1.00 2764 97 0.1576 0.1840 REMARK 3 11 2.3700 - 2.2900 1.00 2723 161 0.1567 0.1871 REMARK 3 12 2.2900 - 2.2300 1.00 2757 138 0.1575 0.1768 REMARK 3 13 2.2300 - 2.1700 1.00 2695 139 0.1564 0.1953 REMARK 3 14 2.1700 - 2.1200 1.00 2686 148 0.1645 0.2062 REMARK 3 15 2.1200 - 2.0700 1.00 2737 156 0.1719 0.2071 REMARK 3 16 2.0700 - 2.0200 1.00 2714 148 0.1833 0.2425 REMARK 3 17 2.0200 - 1.9800 1.00 2722 138 0.1936 0.1878 REMARK 3 18 1.9800 - 1.9500 1.00 2684 161 0.1911 0.2466 REMARK 3 19 1.9500 - 1.9100 1.00 2725 142 0.1931 0.2348 REMARK 3 20 1.9100 - 1.8800 1.00 2696 155 0.2085 0.2378 REMARK 3 21 1.8800 - 1.8500 1.00 2656 150 0.2232 0.2599 REMARK 3 22 1.8500 - 1.8200 1.00 2748 145 0.2377 0.2842 REMARK 3 23 1.8200 - 1.7900 1.00 2709 128 0.2448 0.2845 REMARK 3 24 1.7900 - 1.7700 1.00 2716 132 0.2716 0.2835 REMARK 3 25 1.7700 - 1.7400 1.00 2695 131 0.2762 0.3351 REMARK 3 26 1.7400 - 1.7200 1.00 2702 162 0.2836 0.3015 REMARK 3 27 1.7200 - 1.7000 1.00 2694 140 0.2896 0.3323 REMARK 3 28 1.7000 - 1.6800 1.00 2718 157 0.3015 0.3244 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.197 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.94 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 4924 REMARK 3 ANGLE : 1.055 6673 REMARK 3 CHIRALITY : 0.058 751 REMARK 3 PLANARITY : 0.008 865 REMARK 3 DIHEDRAL : 14.824 1774 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.4084 -6.8228 -18.6266 REMARK 3 T TENSOR REMARK 3 T11: 0.1683 T22: 0.1291 REMARK 3 T33: 0.1628 T12: 0.0229 REMARK 3 T13: 0.0016 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 3.1302 L22: 0.9136 REMARK 3 L33: 2.7441 L12: 0.2320 REMARK 3 L13: -0.7301 L23: -0.1831 REMARK 3 S TENSOR REMARK 3 S11: -0.0128 S12: -0.1132 S13: 0.0427 REMARK 3 S21: 0.0096 S22: -0.0162 S23: -0.0273 REMARK 3 S31: 0.0392 S32: 0.2423 S33: 0.0257 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 44 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.2378 -5.4998 -24.9659 REMARK 3 T TENSOR REMARK 3 T11: 0.1846 T22: 0.3570 REMARK 3 T33: 0.2547 T12: 0.0147 REMARK 3 T13: -0.0032 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 2.7353 L22: 0.7935 REMARK 3 L33: 3.7777 L12: -0.0055 REMARK 3 L13: -0.1985 L23: -1.1650 REMARK 3 S TENSOR REMARK 3 S11: -0.0896 S12: -0.2204 S13: 0.1306 REMARK 3 S21: 0.0656 S22: -0.1422 S23: -0.1992 REMARK 3 S31: -0.0921 S32: 0.5683 S33: 0.2362 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 110 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.1777 -15.8623 -21.4653 REMARK 3 T TENSOR REMARK 3 T11: 0.1906 T22: 0.1256 REMARK 3 T33: 0.2122 T12: 0.0489 REMARK 3 T13: 0.0249 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 3.4517 L22: 1.9300 REMARK 3 L33: 5.3470 L12: -1.3697 REMARK 3 L13: 3.0939 L23: -2.0390 REMARK 3 S TENSOR REMARK 3 S11: -0.1245 S12: -0.1110 S13: -0.1721 REMARK 3 S21: 0.0310 S22: 0.0141 S23: -0.0842 REMARK 3 S31: 0.1625 S32: 0.1590 S33: 0.0089 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 111 THROUGH 166 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5588 -4.6321 -23.3614 REMARK 3 T TENSOR REMARK 3 T11: 0.1641 T22: 0.1169 REMARK 3 T33: 0.1832 T12: -0.0033 REMARK 3 T13: 0.0017 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 3.0449 L22: 0.4839 REMARK 3 L33: 4.0551 L12: 0.1119 REMARK 3 L13: 0.3880 L23: 0.2455 REMARK 3 S TENSOR REMARK 3 S11: -0.0224 S12: -0.0772 S13: 0.0791 REMARK 3 S21: 0.0089 S22: -0.0018 S23: 0.0176 REMARK 3 S31: -0.0001 S32: 0.0662 S33: 0.0367 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 167 THROUGH 213 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.3647 -3.0673 -33.6641 REMARK 3 T TENSOR REMARK 3 T11: 0.1990 T22: 0.1749 REMARK 3 T33: 0.1792 T12: -0.0030 REMARK 3 T13: -0.0073 T23: 0.0263 REMARK 3 L TENSOR REMARK 3 L11: 3.8965 L22: 0.2063 REMARK 3 L33: 0.6906 L12: 0.6264 REMARK 3 L13: -0.4786 L23: 0.0180 REMARK 3 S TENSOR REMARK 3 S11: -0.0235 S12: 0.2902 S13: 0.2082 REMARK 3 S21: -0.0471 S22: 0.0605 S23: 0.0295 REMARK 3 S31: -0.0791 S32: -0.0414 S33: -0.0486 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 214 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4556 -6.8405 -33.8535 REMARK 3 T TENSOR REMARK 3 T11: 0.1703 T22: 0.2436 REMARK 3 T33: 0.2146 T12: -0.0018 REMARK 3 T13: -0.0038 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 2.3579 L22: 1.8172 REMARK 3 L33: 2.4006 L12: -0.3057 REMARK 3 L13: 0.0508 L23: -0.1062 REMARK 3 S TENSOR REMARK 3 S11: -0.0192 S12: 0.0389 S13: 0.0202 REMARK 3 S21: 0.0559 S22: 0.0124 S23: 0.1234 REMARK 3 S31: -0.0455 S32: -0.1542 S33: 0.0081 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 22 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0308 -6.8708 -8.2978 REMARK 3 T TENSOR REMARK 3 T11: 0.1767 T22: 0.1369 REMARK 3 T33: 0.1677 T12: -0.0179 REMARK 3 T13: 0.0174 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 1.9738 L22: 3.4176 REMARK 3 L33: 3.4793 L12: 0.4122 REMARK 3 L13: -0.1158 L23: -1.5318 REMARK 3 S TENSOR REMARK 3 S11: 0.1231 S12: 0.0846 S13: -0.0268 REMARK 3 S21: -0.1056 S22: -0.0587 S23: 0.1464 REMARK 3 S31: 0.2931 S32: -0.1023 S33: -0.0460 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 23 THROUGH 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.7040 -9.8847 1.8429 REMARK 3 T TENSOR REMARK 3 T11: 0.1845 T22: 0.2650 REMARK 3 T33: 0.1847 T12: -0.0747 REMARK 3 T13: 0.0344 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 2.4503 L22: 1.7386 REMARK 3 L33: 3.9480 L12: -1.0058 REMARK 3 L13: 1.6288 L23: -0.4400 REMARK 3 S TENSOR REMARK 3 S11: 0.0358 S12: -0.4166 S13: -0.2557 REMARK 3 S21: 0.0543 S22: 0.1136 S23: 0.2030 REMARK 3 S31: 0.3314 S32: -0.6843 S33: -0.0332 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 181 THROUGH 226 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8082 12.2704 -12.9136 REMARK 3 T TENSOR REMARK 3 T11: 0.2016 T22: 0.2254 REMARK 3 T33: 0.1790 T12: 0.0552 REMARK 3 T13: 0.0131 T23: -0.0285 REMARK 3 L TENSOR REMARK 3 L11: 0.8089 L22: 1.6483 REMARK 3 L33: 2.3088 L12: -0.2388 REMARK 3 L13: -0.1433 L23: -1.1923 REMARK 3 S TENSOR REMARK 3 S11: 0.0340 S12: 0.0520 S13: 0.0605 REMARK 3 S21: 0.1014 S22: 0.1464 S23: 0.0313 REMARK 3 S31: -0.3551 S32: -0.5091 S33: -0.1392 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 227 THROUGH 305 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.4945 18.0535 -15.2277 REMARK 3 T TENSOR REMARK 3 T11: 0.3810 T22: 0.1950 REMARK 3 T33: 0.2191 T12: 0.0072 REMARK 3 T13: 0.0444 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 2.8914 L22: 2.5808 REMARK 3 L33: 3.5205 L12: -0.4512 REMARK 3 L13: -1.2901 L23: -0.4778 REMARK 3 S TENSOR REMARK 3 S11: 0.0851 S12: -0.0568 S13: 0.2457 REMARK 3 S21: 0.1430 S22: 0.0720 S23: 0.0442 REMARK 3 S31: -0.8666 S32: -0.0609 S33: -0.1170 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BGP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113350. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 11.2C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80614 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 56.110 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BB2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.12M ETHYLENE GLYCOLS (DIETHYLENE REMARK 280 GLYCOL; TRIETHYLENE GLYCOL; TETRAETHYLENE GLYCOL; PENTAETHYLENE REMARK 280 GLYCOL) 0.1M TRIS/BICINE PH 8.5, 20% V/V PEG 500 MME; 10 % W/V REMARK 280 PEG 20000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.92650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.75700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.88950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.75700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.92650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.88950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 302 REMARK 465 VAL A 303 REMARK 465 THR A 304 REMARK 465 PHE A 305 REMARK 465 GLN A 306 REMARK 465 GLN B 306 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 33 -130.62 56.72 REMARK 500 ASP A 48 51.07 -113.46 REMARK 500 ASN A 84 -123.65 50.40 REMARK 500 TYR A 154 -132.93 70.60 REMARK 500 GLN A 189 30.30 -92.69 REMARK 500 ASP B 33 -131.71 50.79 REMARK 500 ASP B 48 80.66 -156.18 REMARK 500 ASN B 84 -125.81 53.21 REMARK 500 TYR B 154 -103.38 69.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 774 DISTANCE = 6.25 ANGSTROMS REMARK 525 HOH A 775 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH B 686 DISTANCE = 7.48 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B 221 O REMARK 620 2 ASN B 221 OD1 74.7 REMARK 620 3 PHE B 223 O 116.0 100.7 REMARK 620 4 ASP B 263 O 148.2 119.6 90.4 REMARK 620 5 ASP B 263 OD1 92.3 165.7 90.3 68.9 REMARK 620 6 HOH B 510 O 75.6 94.9 162.5 74.9 75.7 REMARK 620 N 1 2 3 4 5 REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: N-[(BENZYLOXY)CARBONYL]-L-LEUCYL-N-[(2S)-1-HYDROXY- REMARK 630 4-METHYLPENTAN-2-YL]-L-LEUCINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 ALD A 402 REMARK 630 ALD B 401 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: PHQ LEU LEU DCL REMARK 630 DETAILS: NULL DBREF 7BGP A 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 DBREF 7BGP B 1 306 UNP P0DTD1 R1AB_SARS2 3264 3569 SEQRES 1 A 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 A 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 A 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 A 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 A 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 A 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 A 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 A 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 A 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 A 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 A 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 A 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 A 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 A 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 A 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 A 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 A 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 A 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 A 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 A 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 A 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 A 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 A 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 A 306 CYS SER GLY VAL THR PHE GLN SEQRES 1 B 306 SER GLY PHE ARG LYS MET ALA PHE PRO SER GLY LYS VAL SEQRES 2 B 306 GLU GLY CYS MET VAL GLN VAL THR CYS GLY THR THR THR SEQRES 3 B 306 LEU ASN GLY LEU TRP LEU ASP ASP VAL VAL TYR CYS PRO SEQRES 4 B 306 ARG HIS VAL ILE CYS THR SER GLU ASP MET LEU ASN PRO SEQRES 5 B 306 ASN TYR GLU ASP LEU LEU ILE ARG LYS SER ASN HIS ASN SEQRES 6 B 306 PHE LEU VAL GLN ALA GLY ASN VAL GLN LEU ARG VAL ILE SEQRES 7 B 306 GLY HIS SER MET GLN ASN CYS VAL LEU LYS LEU LYS VAL SEQRES 8 B 306 ASP THR ALA ASN PRO LYS THR PRO LYS TYR LYS PHE VAL SEQRES 9 B 306 ARG ILE GLN PRO GLY GLN THR PHE SER VAL LEU ALA CYS SEQRES 10 B 306 TYR ASN GLY SER PRO SER GLY VAL TYR GLN CYS ALA MET SEQRES 11 B 306 ARG PRO ASN PHE THR ILE LYS GLY SER PHE LEU ASN GLY SEQRES 12 B 306 SER CYS GLY SER VAL GLY PHE ASN ILE ASP TYR ASP CYS SEQRES 13 B 306 VAL SER PHE CYS TYR MET HIS HIS MET GLU LEU PRO THR SEQRES 14 B 306 GLY VAL HIS ALA GLY THR ASP LEU GLU GLY ASN PHE TYR SEQRES 15 B 306 GLY PRO PHE VAL ASP ARG GLN THR ALA GLN ALA ALA GLY SEQRES 16 B 306 THR ASP THR THR ILE THR VAL ASN VAL LEU ALA TRP LEU SEQRES 17 B 306 TYR ALA ALA VAL ILE ASN GLY ASP ARG TRP PHE LEU ASN SEQRES 18 B 306 ARG PHE THR THR THR LEU ASN ASP PHE ASN LEU VAL ALA SEQRES 19 B 306 MET LYS TYR ASN TYR GLU PRO LEU THR GLN ASP HIS VAL SEQRES 20 B 306 ASP ILE LEU GLY PRO LEU SER ALA GLN THR GLY ILE ALA SEQRES 21 B 306 VAL LEU ASP MET CYS ALA SER LEU LYS GLU LEU LEU GLN SEQRES 22 B 306 ASN GLY MET ASN GLY ARG THR ILE LEU GLY SER ALA LEU SEQRES 23 B 306 LEU GLU ASP GLU PHE THR PRO PHE ASP VAL VAL ARG GLN SEQRES 24 B 306 CYS SER GLY VAL THR PHE GLN HET EDO A 401 10 HET ALD A 402 76 HET CL A 403 1 HET EDO A 404 10 HET EDO A 405 10 HET EDO A 406 10 HET EDO A 407 10 HET EDO A 408 10 HET EDO A 409 10 HET ALD B 401 76 HET EDO B 402 10 HET EDO B 403 10 HET NA B 404 1 HET EDO B 405 10 HETNAM EDO 1,2-ETHANEDIOL HETNAM ALD N-[(BENZYLOXY)CARBONYL]-L-LEUCYL-N-[(2S)-1-HYDROXY-4- HETNAM 2 ALD METHYLPENTAN-2-YL]-L-LEUCINAMIDE HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 10(C2 H6 O2) FORMUL 4 ALD 2(C26 H43 N3 O5) FORMUL 5 CL CL 1- FORMUL 15 NA NA 1+ FORMUL 17 HOH *461(H2 O) HELIX 1 AA1 SER A 10 GLY A 15 1 6 HELIX 2 AA2 HIS A 41 CYS A 44 5 4 HELIX 3 AA3 ASN A 53 ARG A 60 1 8 HELIX 4 AA4 LYS A 61 HIS A 64 5 4 HELIX 5 AA5 ILE A 200 ASN A 214 1 15 HELIX 6 AA6 THR A 226 LYS A 236 1 11 HELIX 7 AA7 THR A 243 LEU A 250 1 8 HELIX 8 AA8 LEU A 250 GLY A 258 1 9 HELIX 9 AA9 ALA A 260 GLY A 275 1 16 HELIX 10 AB1 THR A 292 SER A 301 1 10 HELIX 11 AB2 SER B 10 GLY B 15 1 6 HELIX 12 AB3 HIS B 41 CYS B 44 5 4 HELIX 13 AB4 ASN B 53 LYS B 61 1 9 HELIX 14 AB5 SER B 62 HIS B 64 5 3 HELIX 15 AB6 ILE B 200 ASN B 214 1 15 HELIX 16 AB7 THR B 226 TYR B 237 1 12 HELIX 17 AB8 THR B 243 GLY B 258 1 16 HELIX 18 AB9 ALA B 260 GLY B 275 1 16 HELIX 19 AC1 THR B 292 GLY B 302 1 11 SHEET 1 AA1 7 VAL A 73 LEU A 75 0 SHEET 2 AA1 7 PHE A 66 ALA A 70 -1 N ALA A 70 O VAL A 73 SHEET 3 AA1 7 MET A 17 CYS A 22 -1 N THR A 21 O LEU A 67 SHEET 4 AA1 7 THR A 25 LEU A 32 -1 O LEU A 27 N VAL A 20 SHEET 5 AA1 7 VAL A 35 PRO A 39 -1 O VAL A 35 N LEU A 32 SHEET 6 AA1 7 VAL A 86 VAL A 91 -1 O LEU A 87 N CYS A 38 SHEET 7 AA1 7 VAL A 77 GLN A 83 -1 N SER A 81 O LYS A 88 SHEET 1 AA2 5 TYR A 101 PHE A 103 0 SHEET 2 AA2 5 VAL A 157 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA2 5 VAL A 148 ASN A 151 -1 N ASN A 151 O SER A 158 SHEET 4 AA2 5 THR A 111 TYR A 118 -1 N SER A 113 O PHE A 150 SHEET 5 AA2 5 SER A 121 ALA A 129 -1 O SER A 123 N ALA A 116 SHEET 1 AA3 3 TYR A 101 PHE A 103 0 SHEET 2 AA3 3 VAL A 157 GLU A 166 1 O PHE A 159 N LYS A 102 SHEET 3 AA3 3 HIS A 172 THR A 175 -1 O ALA A 173 N MET A 165 SHEET 1 AA4 7 VAL B 73 LEU B 75 0 SHEET 2 AA4 7 PHE B 66 ALA B 70 -1 N ALA B 70 O VAL B 73 SHEET 3 AA4 7 MET B 17 CYS B 22 -1 N THR B 21 O LEU B 67 SHEET 4 AA4 7 THR B 25 LEU B 32 -1 O LEU B 27 N VAL B 20 SHEET 5 AA4 7 VAL B 35 PRO B 39 -1 O VAL B 35 N LEU B 32 SHEET 6 AA4 7 VAL B 86 VAL B 91 -1 O LEU B 87 N CYS B 38 SHEET 7 AA4 7 VAL B 77 GLN B 83 -1 N ILE B 78 O LYS B 90 SHEET 1 AA5 5 TYR B 101 PHE B 103 0 SHEET 2 AA5 5 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA5 5 VAL B 148 ASP B 153 -1 N ASN B 151 O SER B 158 SHEET 4 AA5 5 THR B 111 TYR B 118 -1 N SER B 113 O PHE B 150 SHEET 5 AA5 5 SER B 121 ALA B 129 -1 O TYR B 126 N VAL B 114 SHEET 1 AA6 3 TYR B 101 PHE B 103 0 SHEET 2 AA6 3 CYS B 156 GLU B 166 1 O PHE B 159 N LYS B 102 SHEET 3 AA6 3 HIS B 172 THR B 175 -1 O ALA B 173 N MET B 165 LINK SG CYS A 145 C22 ALD A 402 1555 1555 1.78 LINK SG CYS B 145 C22 ALD B 401 1555 1555 1.76 LINK O ASN B 221 NA NA B 404 1555 1555 2.67 LINK OD1 ASN B 221 NA NA B 404 1555 1555 2.19 LINK O PHE B 223 NA NA B 404 1555 1555 2.31 LINK O ASP B 263 NA NA B 404 1555 1555 3.00 LINK OD1 ASP B 263 NA NA B 404 1555 1555 2.23 LINK NA NA B 404 O HOH B 510 1555 1555 2.49 CRYST1 67.853 99.779 103.514 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014738 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010022 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009661 0.00000