HEADER TRANSCRIPTION 14-JAN-21 7BJU TITLE CRYSTAL STRUCTURE OF THE LIGAND-BINDING DOMAINS OF THE HETERODIMER TITLE 2 ECR/USP BOUND TO THE SYNTHETIC AGONIST BYI08346 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ULTRASPIRACLE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: LIGAND-BINDING DOMAIN; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: ECDYSONE RECEPTOR; COMPND 8 CHAIN: D; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 OTHER_DETAILS: LIGAND-BINDING DOMAIN SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELIOTHIS VIRESCENS; SOURCE 3 ORGANISM_COMMON: TOBACCO BUDWORM MOTH; SOURCE 4 ORGANISM_TAXID: 7102; SOURCE 5 GENE: B5V51_5554; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HELIOTHIS VIRESCENS; SOURCE 10 ORGANISM_COMMON: TOBACCO BUDWORM MOTH; SOURCE 11 ORGANISM_TAXID: 7102; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008 KEYWDS NUCLEAR RECEPTOR, LIGAND-BINDING DOMAIN, ECDYSONE RECEPTOR, KEYWDS 2 DIBENZOYLHYDRAZINE, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR C.BROWNING,A.G.MCEWEN,I.M.L.BILLAS REVDAT 2 31-JAN-24 7BJU 1 JRNL REVDAT 1 07-APR-21 7BJU 0 JRNL AUTH C.BROWNING,A.G.MCEWEN,K.MORI,T.YOKOI,D.MORAS,Y.NAKAGAWA, JRNL AUTH 2 I.M.L.BILLAS JRNL TITL NONSTEROIDAL ECDYSONE RECEPTOR AGONISTS USE A WATER CHANNEL JRNL TITL 2 FOR BINDING TO THE ECDYSONE RECEPTOR COMPLEX ECR/USP. JRNL REF J PESTIC SCI V. 46 88 2021 JRNL REFN ISSN 1348-589X JRNL PMID 33746550 JRNL DOI 10.1584/JPESTICS.D20-095 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV 3951 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.40 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 17794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.280 REMARK 3 FREE R VALUE TEST SET COUNT : 939 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.4000 - 5.4500 1.00 2512 121 0.1909 0.2286 REMARK 3 2 5.4500 - 4.3300 1.00 2460 103 0.1689 0.2059 REMARK 3 3 4.3300 - 3.7800 1.00 2436 120 0.1519 0.2010 REMARK 3 4 3.7800 - 3.4300 1.00 2380 148 0.1797 0.2047 REMARK 3 5 3.4300 - 3.1900 1.00 2362 146 0.1999 0.2874 REMARK 3 6 3.1900 - 3.0000 1.00 2358 149 0.2191 0.2633 REMARK 3 7 3.0000 - 2.8500 1.00 2347 152 0.2286 0.2830 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.320 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 63.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 14 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -9.5335 60.8626 50.3750 REMARK 3 T TENSOR REMARK 3 T11: 0.4770 T22: 0.5772 REMARK 3 T33: 0.3256 T12: 0.0256 REMARK 3 T13: 0.0746 T23: -0.0619 REMARK 3 L TENSOR REMARK 3 L11: 2.0860 L22: 3.3890 REMARK 3 L33: 1.0278 L12: -2.6718 REMARK 3 L13: 1.4651 L23: -1.8684 REMARK 3 S TENSOR REMARK 3 S11: -0.1013 S12: -0.8762 S13: -0.2811 REMARK 3 S21: 1.0622 S22: 0.6804 S23: 0.7518 REMARK 3 S31: 0.3143 S32: 0.1554 S33: 0.2248 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 219 THROUGH 239 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.5788 60.8484 27.4841 REMARK 3 T TENSOR REMARK 3 T11: 0.3923 T22: 0.5496 REMARK 3 T33: 0.6789 T12: -0.1327 REMARK 3 T13: -0.2768 T23: 0.0004 REMARK 3 L TENSOR REMARK 3 L11: 1.0230 L22: 1.8764 REMARK 3 L33: 1.6800 L12: -0.8360 REMARK 3 L13: -0.1045 L23: 1.3152 REMARK 3 S TENSOR REMARK 3 S11: 0.1431 S12: -0.3580 S13: 1.0401 REMARK 3 S21: -0.5660 S22: -0.0855 S23: 0.5795 REMARK 3 S31: -0.6935 S32: -0.2247 S33: 1.2740 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 240 THROUGH 301 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.2982 59.8110 33.6789 REMARK 3 T TENSOR REMARK 3 T11: 0.2429 T22: 0.3811 REMARK 3 T33: 0.3591 T12: -0.0105 REMARK 3 T13: -0.0131 T23: -0.0405 REMARK 3 L TENSOR REMARK 3 L11: 1.8828 L22: 1.1106 REMARK 3 L33: 0.6111 L12: -0.2156 REMARK 3 L13: -0.2223 L23: -0.9892 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.2620 S13: -0.0802 REMARK 3 S21: 0.0873 S22: 0.0073 S23: 0.2921 REMARK 3 S31: 0.1036 S32: -0.1878 S33: 0.0001 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 302 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4244 35.0640 30.1697 REMARK 3 T TENSOR REMARK 3 T11: 0.6026 T22: 0.4018 REMARK 3 T33: 0.8580 T12: 0.0024 REMARK 3 T13: 0.1683 T23: -0.0150 REMARK 3 L TENSOR REMARK 3 L11: 2.6032 L22: 1.6670 REMARK 3 L33: 2.4041 L12: -0.4128 REMARK 3 L13: 2.1413 L23: 0.6956 REMARK 3 S TENSOR REMARK 3 S11: -0.4155 S12: -0.5163 S13: -0.4969 REMARK 3 S21: -0.6840 S22: -0.5596 S23: 0.6786 REMARK 3 S31: 0.5511 S32: -0.3251 S33: -0.1449 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 322 THROUGH 412 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.9141 53.7241 36.3666 REMARK 3 T TENSOR REMARK 3 T11: 0.2316 T22: 0.3081 REMARK 3 T33: 0.3467 T12: 0.0121 REMARK 3 T13: -0.0127 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 2.6147 L22: 2.0612 REMARK 3 L33: 2.5579 L12: 0.7768 REMARK 3 L13: 0.0253 L23: -0.2111 REMARK 3 S TENSOR REMARK 3 S11: 0.0155 S12: -0.2013 S13: -0.3932 REMARK 3 S21: 0.0988 S22: -0.0170 S23: -0.0894 REMARK 3 S31: 0.2176 S32: -0.0704 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 413 THROUGH 464 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1506 60.6511 30.5876 REMARK 3 T TENSOR REMARK 3 T11: 0.3028 T22: 0.3463 REMARK 3 T33: 0.3716 T12: 0.0182 REMARK 3 T13: -0.0216 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 2.9943 L22: 1.6187 REMARK 3 L33: 0.7977 L12: 1.2606 REMARK 3 L13: 0.6611 L23: 0.0493 REMARK 3 S TENSOR REMARK 3 S11: -0.2264 S12: -0.0977 S13: 0.1909 REMARK 3 S21: -0.1357 S22: 0.1183 S23: 0.3494 REMARK 3 S31: -0.0984 S32: -0.2540 S33: -0.0003 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 286 THROUGH 307 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6976 54.8287 33.1807 REMARK 3 T TENSOR REMARK 3 T11: 0.4890 T22: 0.6727 REMARK 3 T33: 0.8486 T12: 0.2126 REMARK 3 T13: 0.0611 T23: 0.0870 REMARK 3 L TENSOR REMARK 3 L11: 0.8954 L22: 2.2768 REMARK 3 L33: 6.0586 L12: 0.6100 REMARK 3 L13: -0.6376 L23: -1.6023 REMARK 3 S TENSOR REMARK 3 S11: -0.3577 S12: 0.3080 S13: -0.2350 REMARK 3 S21: 0.2538 S22: -0.2833 S23: -1.3657 REMARK 3 S31: -1.5710 S32: -0.1859 S33: -0.6658 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 308 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.5523 64.3683 9.7233 REMARK 3 T TENSOR REMARK 3 T11: 1.2762 T22: 1.6515 REMARK 3 T33: 0.8917 T12: 0.0842 REMARK 3 T13: 0.3273 T23: -0.2105 REMARK 3 L TENSOR REMARK 3 L11: 0.0064 L22: 2.0490 REMARK 3 L33: 0.1504 L12: -0.1273 REMARK 3 L13: -0.0297 L23: 0.5694 REMARK 3 S TENSOR REMARK 3 S11: -0.3852 S12: 0.9210 S13: -0.7930 REMARK 3 S21: 0.7326 S22: 1.2114 S23: -1.3206 REMARK 3 S31: -1.0172 S32: -0.2393 S33: -0.0629 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 332 THROUGH 387 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.9026 56.8782 14.5818 REMARK 3 T TENSOR REMARK 3 T11: 0.5208 T22: 0.7168 REMARK 3 T33: 0.3922 T12: -0.0050 REMARK 3 T13: 0.1732 T23: -0.0687 REMARK 3 L TENSOR REMARK 3 L11: 0.7320 L22: 1.0433 REMARK 3 L33: 1.4903 L12: 0.5339 REMARK 3 L13: 0.3271 L23: -0.6044 REMARK 3 S TENSOR REMARK 3 S11: -0.0829 S12: 0.6981 S13: -0.2154 REMARK 3 S21: -0.3239 S22: 0.0351 S23: -0.7341 REMARK 3 S31: 0.3213 S32: 0.7479 S33: 0.1247 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 388 THROUGH 413 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0703 75.6454 13.7574 REMARK 3 T TENSOR REMARK 3 T11: 1.0207 T22: 0.6530 REMARK 3 T33: 0.3113 T12: -0.2474 REMARK 3 T13: -0.1021 T23: 0.2409 REMARK 3 L TENSOR REMARK 3 L11: 4.4409 L22: 3.5455 REMARK 3 L33: 3.4854 L12: 3.9082 REMARK 3 L13: 0.1210 L23: 0.8431 REMARK 3 S TENSOR REMARK 3 S11: -0.4190 S12: 0.5786 S13: 1.2382 REMARK 3 S21: -1.3908 S22: -0.0111 S23: 0.9655 REMARK 3 S31: -1.8286 S32: -0.1606 S33: -1.1276 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 414 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.4657 62.1167 25.0993 REMARK 3 T TENSOR REMARK 3 T11: 0.3627 T22: 0.3495 REMARK 3 T33: 0.4165 T12: -0.0120 REMARK 3 T13: -0.0022 T23: -0.0586 REMARK 3 L TENSOR REMARK 3 L11: 0.6750 L22: 0.8419 REMARK 3 L33: 1.7589 L12: 0.2260 REMARK 3 L13: 0.4389 L23: -0.9611 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: 0.2127 S13: 0.1038 REMARK 3 S21: -0.4677 S22: -0.1201 S23: 0.0911 REMARK 3 S31: -0.1493 S32: 0.1715 S33: -0.0002 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 455 THROUGH 480 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7725 51.7292 36.6342 REMARK 3 T TENSOR REMARK 3 T11: 0.4471 T22: 0.5417 REMARK 3 T33: 0.6537 T12: 0.0113 REMARK 3 T13: -0.0452 T23: 0.0522 REMARK 3 L TENSOR REMARK 3 L11: 1.3807 L22: 0.4213 REMARK 3 L33: 1.1754 L12: 0.1804 REMARK 3 L13: 0.1777 L23: 0.3728 REMARK 3 S TENSOR REMARK 3 S11: 0.2609 S12: -0.8238 S13: -0.9148 REMARK 3 S21: 0.7674 S22: -0.3067 S23: -0.7179 REMARK 3 S31: 0.8452 S32: 0.2667 S33: -0.2800 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 481 THROUGH 514 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1589 61.3209 23.5064 REMARK 3 T TENSOR REMARK 3 T11: 0.4737 T22: 0.4641 REMARK 3 T33: 0.2897 T12: -0.0770 REMARK 3 T13: -0.0245 T23: -0.0365 REMARK 3 L TENSOR REMARK 3 L11: 1.7067 L22: 0.9361 REMARK 3 L33: 0.5020 L12: -0.5000 REMARK 3 L13: -0.9354 L23: 0.1185 REMARK 3 S TENSOR REMARK 3 S11: -0.4666 S12: 0.3545 S13: 0.1546 REMARK 3 S21: -0.1733 S22: -0.1126 S23: -0.0508 REMARK 3 S31: -0.4001 S32: 0.0687 S33: -0.0382 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 515 THROUGH 528 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.5779 56.6600 4.4779 REMARK 3 T TENSOR REMARK 3 T11: 1.1755 T22: 0.8963 REMARK 3 T33: 0.4950 T12: 0.2038 REMARK 3 T13: -0.0027 T23: -0.1026 REMARK 3 L TENSOR REMARK 3 L11: 1.6076 L22: 1.4717 REMARK 3 L33: 0.4788 L12: 1.5378 REMARK 3 L13: -0.8645 L23: -0.8306 REMARK 3 S TENSOR REMARK 3 S11: 0.0227 S12: 1.3062 S13: -0.6284 REMARK 3 S21: -1.8565 S22: -0.5555 S23: -0.0197 REMARK 3 S31: -0.0122 S32: 0.6931 S33: -0.0992 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 15-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113430. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-OCT-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.931 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17798 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 48.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 39.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 7.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1R20 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 1000, 10% PEG 8000, 0.3M REMARK 280 MGCL2, 0.1M HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21490 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 204 REMARK 465 GLU A 303A REMARK 465 GLU A 303B REMARK 465 ARG A 303C REMARK 465 ASP A 303D REMARK 465 GLY A 303E REMARK 465 VAL A 303F REMARK 465 ASP A 303G REMARK 465 GLY A 303H REMARK 465 THR A 303I REMARK 465 GLY A 303J REMARK 465 ASN A 303K REMARK 465 THR A 316 REMARK 465 MET A 465 REMARK 465 MET A 466 REMARK 465 GLY D 267 REMARK 465 SER D 268 REMARK 465 HIS D 269 REMARK 465 MET D 270 REMARK 465 ALA D 271 REMARK 465 SER D 272 REMARK 465 MET D 273 REMARK 465 THR D 274 REMARK 465 GLY D 275 REMARK 465 GLY D 276 REMARK 465 GLN D 277 REMARK 465 GLN D 278 REMARK 465 MET D 279 REMARK 465 GLY D 280 REMARK 465 ARG D 281 REMARK 465 ASP D 282 REMARK 465 PRO D 283 REMARK 465 LEU D 284 REMARK 465 LYS D 285 REMARK 465 THR D 320 REMARK 465 GLN D 321 REMARK 465 THR D 322 REMARK 465 TRP D 323 REMARK 465 GLN D 324 REMARK 465 SER D 325 REMARK 465 ASP D 326 REMARK 465 GLU D 327 REMARK 465 ASP D 328 REMARK 465 ASP D 329 REMARK 465 GLU D 330 REMARK 465 ASP D 331 REMARK 465 ALA D 529 REMARK 465 ASP D 530 REMARK 465 VAL D 531 REMARK 465 ALA D 532 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 317 OG1 CG2 REMARK 470 GLN D 310 CG CD OE1 NE2 REMARK 470 GLU D 313 CG CD OE1 OE2 REMARK 470 LEU D 316 CG CD1 CD2 REMARK 470 LYS D 317 CG CD CE NZ REMARK 470 ARG D 318 CG CD NE CZ NH1 NH2 REMARK 470 VAL D 319 CG1 CG2 REMARK 470 SER D 332 OG REMARK 470 MET D 334 CG SD CE REMARK 470 GLN D 401 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 407 48.07 -108.90 REMARK 500 SER D 312 -114.26 -109.65 REMARK 500 ALA D 398 -63.15 59.25 REMARK 500 ASN D 400 80.89 -68.76 REMARK 500 GLN D 401 -57.51 -136.32 REMARK 500 MET D 413 52.06 -109.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EPH A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG D 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 834 D 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PE8 D 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE D 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG D 605 DBREF1 7BJU A 205 466 UNP A0A2A4K9Z3_HELVI DBREF2 7BJU A A0A2A4K9Z3 153 414 DBREF 7BJU D 267 532 PDB 7BJU 7BJU 267 532 SEQADV 7BJU MET A 204 UNP A0A2A4K9Z INITIATING METHIONINE SEQRES 1 A 263 MET VAL GLN GLU LEU SER ILE GLU ARG LEU LEU GLU MET SEQRES 2 A 263 GLU SER LEU VAL ALA ASP PRO SER GLU GLU PHE GLN PHE SEQRES 3 A 263 LEU ARG VAL GLY PRO ASP SER ASN VAL PRO PRO LYS PHE SEQRES 4 A 263 ARG ALA PRO VAL SER SER LEU CYS GLN ILE GLY ASN LYS SEQRES 5 A 263 GLN ILE ALA ALA LEU VAL VAL TRP ALA ARG ASP ILE PRO SEQRES 6 A 263 HIS PHE SER GLN LEU GLU MET GLU ASP GLN ILE LEU LEU SEQRES 7 A 263 ILE LYS GLY SER TRP ASN GLU LEU LEU LEU PHE ALA ILE SEQRES 8 A 263 ALA TRP ARG SER MET GLU PHE LEU THR GLU GLU ARG ASP SEQRES 9 A 263 GLY VAL ASP GLY THR GLY ASN ARG THR THR SER PRO PRO SEQRES 10 A 263 GLN LEU MET CYS LEU MET PRO GLY MET THR LEU HIS ARG SEQRES 11 A 263 ASN SER ALA LEU GLN ALA GLY VAL GLY GLN ILE PHE ASP SEQRES 12 A 263 ARG VAL LEU SER GLU LEU SER LEU LYS MET ARG THR LEU SEQRES 13 A 263 ARG VAL ASP GLN ALA GLU TYR VAL ALA LEU LYS ALA ILE SEQRES 14 A 263 ILE LEU LEU ASN PRO ASP VAL LYS GLY LEU LYS ASN ARG SEQRES 15 A 263 GLN GLU VAL GLU VAL LEU ARG GLU LYS MET PHE LEU CYS SEQRES 16 A 263 LEU ASP GLU TYR CYS ARG ARG SER ARG SER SER GLU GLU SEQRES 17 A 263 GLY ARG PHE ALA ALA LEU LEU LEU ARG LEU PRO ALA LEU SEQRES 18 A 263 ARG SER ILE SER LEU LYS SER PHE GLU HIS LEU PHE PHE SEQRES 19 A 263 PHE HIS LEU VAL ALA ASP THR SER ILE ALA GLY TYR ILE SEQRES 20 A 263 ARG ASP ALA LEU ARG ASN HIS ALA PRO PRO ILE ASP THR SEQRES 21 A 263 ASN MET MET SEQRES 1 D 266 GLY SER HIS MET ALA SER MET THR GLY GLY GLN GLN MET SEQRES 2 D 266 GLY ARG ASP PRO LEU LYS ASN VAL PRO PRO LEU THR ALA SEQRES 3 D 266 ASN GLN LYS SER LEU ILE ALA ARG LEU VAL TYR TYR GLN SEQRES 4 D 266 GLU GLY TYR GLU GLN PRO SER GLU GLU ASP LEU LYS ARG SEQRES 5 D 266 VAL THR GLN THR TRP GLN SER ASP GLU ASP ASP GLU ASP SEQRES 6 D 266 SER ASP MET PRO PHE ARG GLN ILE THR GLU MET THR ILE SEQRES 7 D 266 LEU THR VAL GLN LEU ILE VAL GLU PHE ALA LYS GLY LEU SEQRES 8 D 266 PRO GLY PHE SER LYS ILE SER GLN SER ASP GLN ILE THR SEQRES 9 D 266 LEU LEU LYS ALA CYS SER SER GLU VAL MET MET LEU ARG SEQRES 10 D 266 VAL ALA ARG ARG TYR ASP ALA ALA THR ASP SER VAL LEU SEQRES 11 D 266 PHE ALA ASN ASN GLN ALA TYR THR ARG ASP ASN TYR ARG SEQRES 12 D 266 LYS ALA GLY MET ALA TYR VAL ILE GLU ASP LEU LEU HIS SEQRES 13 D 266 PHE CYS ARG CYS MET TYR SER MET MET MET ASP ASN VAL SEQRES 14 D 266 HIS TYR ALA LEU LEU THR ALA ILE VAL ILE PHE SER ASP SEQRES 15 D 266 ARG PRO GLY LEU GLU GLN PRO SER LEU VAL GLU GLU ILE SEQRES 16 D 266 GLN ARG TYR TYR LEU ASN THR LEU ARG VAL TYR ILE LEU SEQRES 17 D 266 ASN GLN ASN SER ALA SER PRO ARG SER ALA VAL ILE PHE SEQRES 18 D 266 GLY LYS ILE LEU GLY ILE LEU THR GLU ILE ARG THR LEU SEQRES 19 D 266 GLY MET GLN ASN SER ASN MET CYS ILE SER LEU LYS LEU SEQRES 20 D 266 LYS ASN ARG LYS LEU PRO PRO PHE LEU GLU GLU ILE TRP SEQRES 21 D 266 ASP VAL ALA ASP VAL ALA HET EPH A 501 49 HET PEG D 601 7 HET 834 D 602 30 HET PE8 D 603 25 HET PGE D 604 10 HET MG D 605 1 HETNAM EPH L-ALPHA-PHOSPHATIDYL-BETA-OLEOYL-GAMMA-PALMITOYL- HETNAM 2 EPH PHOSPHATIDYLETHANOLAMINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM 834 N-[2-(2-CHLOROPHENYL)-4-METHYL-5-(1-METHYLETHYL)-1H- HETNAM 2 834 IMIDAZOL-1-YL]-5-METHYL-2,3-DIHYDRO-1,4-BENZODIOXINE- HETNAM 3 834 6-CARBOXAMIDE HETNAM PE8 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23-DIOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM MG MAGNESIUM ION HETSYN 834 N-(2-(2-CHLOROPHENYL)-5-ISOPROPYL-4-METHYL-1H-IMIDAZOL- HETSYN 2 834 1-YL)-5-METHYL-2,3-DIHYROBENZO[B][1,4]DIOXINE-6- HETSYN 3 834 CARBOXAMIDE FORMUL 3 EPH C39 H68 N O8 P FORMUL 4 PEG C4 H10 O3 FORMUL 5 834 C23 H24 CL N3 O3 FORMUL 6 PE8 C16 H34 O9 FORMUL 7 PGE C6 H14 O4 FORMUL 8 MG MG 2+ FORMUL 9 HOH *88(H2 O) HELIX 1 AA1 SER A 209 SER A 218 1 10 HELIX 2 AA2 PRO A 239 ASP A 266 1 28 HELIX 3 AA3 GLU A 274 SER A 298 1 25 HELIX 4 AA4 ARG A 333 ALA A 339 1 7 HELIX 5 AA5 VAL A 341 LEU A 352 1 12 HELIX 6 AA6 LEU A 352 LEU A 359 1 8 HELIX 7 AA7 ASP A 362 LEU A 375 1 14 HELIX 8 AA8 ASN A 384 SER A 406 1 23 HELIX 9 AA9 GLY A 412 LEU A 419 1 8 HELIX 10 AB1 LEU A 419 PHE A 438 1 20 HELIX 11 AB2 ALA A 442 HIS A 457 1 16 HELIX 12 AB3 THR D 291 GLN D 310 1 20 HELIX 13 AB4 GLU D 314 VAL D 319 1 6 HELIX 14 AB5 ASP D 333 GLY D 356 1 24 HELIX 15 AB6 SER D 364 ARG D 386 1 23 HELIX 16 AB7 THR D 404 ALA D 411 1 8 HELIX 17 AB8 VAL D 416 SER D 429 1 14 HELIX 18 AB9 ASP D 433 PHE D 446 1 14 HELIX 19 AC1 GLN D 454 ASN D 477 1 24 HELIX 20 AC2 PRO D 481 LYS D 514 1 34 HELIX 21 AC3 PRO D 519 TRP D 526 1 8 SHEET 1 AA1 2 LEU A 322 MET A 326 0 SHEET 2 AA1 2 MET A 329 HIS A 332 -1 O LEU A 331 N MET A 323 SHEET 1 AA2 2 TYR D 388 ASP D 389 0 SHEET 2 AA2 2 SER D 394 VAL D 395 -1 O SER D 394 N ASP D 389 SITE 1 AC1 11 LEU A 230 PRO A 239 PHE A 242 LEU A 249 SITE 2 AC1 11 GLY A 328 SER A 335 GLN A 338 ALA A 339 SITE 3 AC1 11 HIS A 434 LEU A 435 PHE A 438 SITE 1 AC2 2 LYS A 355 ASP D 448 SITE 1 AC3 15 THR D 343 MET D 380 MET D 381 VAL D 384 SITE 2 AC3 15 TYR D 403 TYR D 408 VAL D 416 ASP D 419 SITE 3 AC3 15 LEU D 420 GLN D 503 ASN D 504 MET D 507 SITE 4 AC3 15 CYS D 508 LEU D 522 TRP D 526 SITE 1 AC4 4 SER D 296 ALA D 299 ARG D 300 TYR D 303 SITE 1 AC5 2 LYS D 362 TYR D 464 SITE 1 AC6 2 PHE D 353 GLY D 356 CRYST1 147.875 147.875 59.776 90.00 90.00 120.00 P 3 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006762 0.003904 0.000000 0.00000 SCALE2 0.000000 0.007809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016729 0.00000