HEADER VIRAL PROTEIN 19-JAN-21 7BM0 TITLE CRYSTAL STRUCTURE OF THE TICK-BORNE ENCEPHALITIS VIRUS NS3 HELICASE IN TITLE 2 COMPLEX WITH AMPPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: NS3 HELICASE DOMAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SERINE PROTEASE NS3; COMPND 5 EC: 3.6.4.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TICK-BORNE ENCEPHALITIS VIRUS; SOURCE 3 ORGANISM_TAXID: 11084; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: CODONPLUS-RIPL; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-19B KEYWDS RNA HELICASE, HYDROLASE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.D.ANINDITA,P.GRINKEVICH,Z.FRANTA REVDAT 6 31-JAN-24 7BM0 1 REMARK REVDAT 5 12-OCT-22 7BM0 1 JRNL REMARK REVDAT 4 28-SEP-22 7BM0 1 JRNL REVDAT 3 14-SEP-22 7BM0 1 JRNL REVDAT 2 07-SEP-22 7BM0 1 JRNL REVDAT 1 02-MAR-22 7BM0 0 JRNL AUTH P.D.ANINDITA,M.HALBEISEN,D.REHA,R.TUMA,Z.FRANTA JRNL TITL MECHANISTIC INSIGHT INTO THE RNA-STIMULATED ATPASE ACTIVITY JRNL TITL 2 OF TICK-BORNE ENCEPHALITIS VIRUS HELICASE. JRNL REF J.BIOL.CHEM. V. 298 02383 2022 JRNL REFN ESSN 1083-351X JRNL PMID 35987382 JRNL DOI 10.1016/J.JBC.2022.102383 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.D.ANINDITA,M.HALBEISEN,D.REHA,R.TUMA,Z.FRANTA REMARK 1 TITL MECHANISTIC INSIGHT INTO THE ATP HYDROLYSIS CYCLE OF REMARK 1 TITL 2 TICK-BORNE ENCEPHALITIS VIRUS HELICASE REMARK 1 REF BIORXIV 2022 REMARK 1 REFN ISSN 2692-8205 REMARK 1 DOI 10.1101/2022.03.15.484399 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0267 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 43006 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 2.230 REMARK 3 FREE R VALUE TEST SET COUNT : 959 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3024 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.29 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3369 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 230 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.67900 REMARK 3 B22 (A**2) : 0.67900 REMARK 3 B33 (A**2) : -1.35700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.261 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.129 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3496 ; 0.016 ; 0.012 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4740 ; 1.765 ; 1.652 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 427 ; 7.162 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 206 ;31.289 ;20.243 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 585 ;15.435 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;20.263 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 453 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2671 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1588 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2326 ; 0.299 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 215 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1714 ; 0.000 ; 3.979 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2139 ; 0.000 ; 5.945 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1782 ; 0.000 ; 4.465 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2601 ; 0.000 ; 6.516 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3496 ; 7.214 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 621 REMARK 3 ORIGIN FOR THE GROUP (A): -17.4382 28.8647 -14.4455 REMARK 3 T TENSOR REMARK 3 T11: 0.0577 T22: 0.0237 REMARK 3 T33: 0.0318 T12: 0.0067 REMARK 3 T13: 0.0302 T23: -0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.6096 L22: 1.0509 REMARK 3 L33: 1.8829 L12: -0.1397 REMARK 3 L13: -0.1539 L23: -0.2691 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: 0.0559 S13: -0.0976 REMARK 3 S21: -0.2348 S22: -0.0435 S23: -0.1053 REMARK 3 S31: 0.1266 S32: 0.1109 S33: 0.0504 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK BULK SOLVENT REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE NOT BEEN USED REMARK 4 REMARK 4 7BM0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113569. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918400 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43006 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 45.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.25 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 14.64 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.030 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 7AY4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BIS TRIS PROPANE PH 6.5, 0.02 M REMARK 280 SODIUM POTASSIUM PHOSPHATE PH. 7.5, 20% W/V PEG 3350, 10% V/V REMARK 280 ETHYLENE GLYCOL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 98.22500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.47600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.47600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.11250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.47600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.47600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 147.33750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.47600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.47600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 49.11250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.47600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.47600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 147.33750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 98.22500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 149 REMARK 465 GLY A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155 REMARK 465 HIS A 156 REMARK 465 HIS A 157 REMARK 465 HIS A 158 REMARK 465 HIS A 159 REMARK 465 HIS A 160 REMARK 465 SER A 161 REMARK 465 SER A 162 REMARK 465 GLY A 163 REMARK 465 HIS A 164 REMARK 465 ILE A 165 REMARK 465 ASP A 166 REMARK 465 ASP A 167 REMARK 465 ASP A 168 REMARK 465 ASP A 169 REMARK 465 LYS A 170 REMARK 465 HIS A 171 REMARK 465 MET A 172 REMARK 465 GLU A 173 REMARK 465 LYS A 174 REMARK 465 SER A 175 REMARK 465 ARG A 176 REMARK 465 PRO A 177 REMARK 465 ASN A 178 REMARK 465 LEU A 179 REMARK 465 PRO A 251 REMARK 465 ALA A 252 REMARK 465 VAL A 253 REMARK 465 SER A 254 REMARK 465 ASP A 255 REMARK 465 GLN A 256 REMARK 465 GLN A 257 REMARK 465 ALA A 258 REMARK 465 GLY A 259 REMARK 465 PRO A 278 REMARK 465 GLN A 279 REMARK 465 THR A 502 REMARK 465 LEU A 503 REMARK 465 ARG A 504 REMARK 465 GLY A 505 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 180 CG CD REMARK 470 GLN A 181 CG CD OE1 NE2 REMARK 470 VAL A 183 CG1 CG2 REMARK 470 THR A 186 OG1 CG2 REMARK 470 ARG A 245 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 611 CD CE NZ REMARK 470 ARG A 621 CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2B ANP A 801 O HOH A 901 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 208 -62.27 -126.46 REMARK 500 PRO A 332 -177.85 -66.42 REMARK 500 ARG A 351 -75.66 -113.35 REMARK 500 ASP A 415 -5.44 -55.97 REMARK 500 ARG A 595 65.41 -156.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 803 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 206 OG1 REMARK 620 2 ANP A 801 O3G 166.1 REMARK 620 3 ANP A 801 O2B 123.3 62.1 REMARK 620 4 ANP A 801 O2A 89.0 104.7 68.4 REMARK 620 5 HOH A 901 O 81.5 95.6 50.7 93.2 REMARK 620 6 HOH A 956 O 90.9 90.9 137.5 90.2 171.7 REMARK 620 7 HOH A 989 O 80.8 85.5 119.5 169.5 87.8 87.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 802 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 981 O REMARK 620 2 HOH A 995 O 121.3 REMARK 620 3 HOH A1030 O 112.4 122.0 REMARK 620 N 1 2 DBREF1 7BM0 A 173 621 UNP A0A2S1PWV0_9FLAV DBREF2 7BM0 A A0A2S1PWV0 1662 2110 SEQADV 7BM0 MET A 149 UNP A0A2S1PWV INITIATING METHIONINE SEQADV 7BM0 GLY A 150 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 HIS A 151 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 HIS A 152 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 HIS A 153 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 HIS A 154 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 HIS A 155 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 HIS A 156 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 HIS A 157 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 HIS A 158 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 HIS A 159 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 HIS A 160 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 SER A 161 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 SER A 162 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 GLY A 163 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 HIS A 164 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 ILE A 165 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 ASP A 166 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 ASP A 167 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 ASP A 168 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 ASP A 169 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 LYS A 170 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 HIS A 171 UNP A0A2S1PWV EXPRESSION TAG SEQADV 7BM0 MET A 172 UNP A0A2S1PWV EXPRESSION TAG SEQRES 1 A 473 MET GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SEQRES 2 A 473 SER GLY HIS ILE ASP ASP ASP ASP LYS HIS MET GLU LYS SEQRES 3 A 473 SER ARG PRO ASN LEU PRO GLN ALA VAL VAL GLY THR GLY SEQRES 4 A 473 TRP THR SER LYS GLY GLN ILE THR VAL LEU ASP MET HIS SEQRES 5 A 473 PRO GLY SER GLY LYS THR HIS ARG VAL LEU PRO GLU LEU SEQRES 6 A 473 ILE ARG GLN CYS ILE ASP ARG ARG LEU ARG THR LEU VAL SEQRES 7 A 473 LEU ALA PRO THR ARG VAL VAL LEU LYS GLU MET GLU ARG SEQRES 8 A 473 ALA LEU ASN GLY LYS ARG VAL ARG PHE HIS SER PRO ALA SEQRES 9 A 473 VAL SER ASP GLN GLN ALA GLY GLY ALA ILE VAL ASP VAL SEQRES 10 A 473 MET CYS HIS ALA THR TYR VAL ASN ARG ARG LEU LEU PRO SEQRES 11 A 473 GLN GLY ARG GLN ASN TRP GLU VAL ALA ILE MET ASP GLU SEQRES 12 A 473 ALA HIS TRP THR ASP PRO HIS SER ILE ALA ALA ARG GLY SEQRES 13 A 473 HIS LEU TYR THR LEU ALA LYS GLU ASN LYS CYS ALA LEU SEQRES 14 A 473 VAL LEU MET THR ALA THR PRO PRO GLY LYS SER GLU PRO SEQRES 15 A 473 PHE PRO GLU SER ASN GLY ALA ILE THR SER GLU GLU ARG SEQRES 16 A 473 GLN ILE PRO ASP GLY GLU TRP ARG ASP GLY PHE ASP TRP SEQRES 17 A 473 ILE THR GLU TYR GLU GLY ARG THR ALA TRP PHE VAL PRO SEQRES 18 A 473 SER ILE ALA LYS GLY GLY ALA ILE ALA ARG THR LEU ARG SEQRES 19 A 473 GLN LYS GLY LYS SER VAL ILE CYS LEU ASN SER LYS THR SEQRES 20 A 473 PHE GLU LYS ASP TYR SER ARG VAL ARG ASP GLU LYS PRO SEQRES 21 A 473 ASP PHE VAL VAL THR THR ASP ILE SER GLU MET GLY ALA SEQRES 22 A 473 ASN LEU ASP VAL SER ARG VAL ILE ASP GLY ARG THR ASN SEQRES 23 A 473 ILE LYS PRO GLU GLU VAL ASP GLY LYS VAL GLU LEU THR SEQRES 24 A 473 GLY THR ARG ARG VAL THR THR ALA SER ALA ALA GLN ARG SEQRES 25 A 473 ARG GLY ARG VAL GLY ARG GLN ASP GLY ARG THR ASP GLU SEQRES 26 A 473 TYR ILE TYR SER GLY GLN CYS ASP ASP ASP ASP SER GLY SEQRES 27 A 473 LEU VAL GLN TRP LYS GLU ALA GLN ILE LEU LEU ASP ASN SEQRES 28 A 473 ILE THR THR LEU ARG GLY PRO VAL ALA THR PHE TYR GLY SEQRES 29 A 473 PRO GLU GLN ASP LYS MET PRO GLU VAL ALA GLY HIS PHE SEQRES 30 A 473 ARG LEU THR GLU GLU LYS ARG LYS HIS PHE ARG HIS LEU SEQRES 31 A 473 LEU THR HIS CYS ASP PHE THR PRO TRP LEU ALA TRP HIS SEQRES 32 A 473 VAL ALA ALA ASN VAL SER SER VAL THR ASP ARG SER TRP SEQRES 33 A 473 THR TRP GLU GLY PRO GLU ALA ASN ALA VAL ASP GLU ALA SEQRES 34 A 473 SER GLY ASP LEU VAL THR PHE ARG SER PRO ASN GLY ALA SEQRES 35 A 473 GLU ARG THR LEU ARG PRO VAL TRP LYS ASP ALA ARG MET SEQRES 36 A 473 PHE LYS GLU GLY ARG ASP ILE LYS GLU PHE VAL ALA TYR SEQRES 37 A 473 ALA SER GLY ARG ARG HET ANP A 801 31 HET NA A 802 1 HET MN A 803 1 HETNAM ANP PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER HETNAM NA SODIUM ION HETNAM MN MANGANESE (II) ION FORMUL 2 ANP C10 H17 N6 O12 P3 FORMUL 3 NA NA 1+ FORMUL 4 MN MN 2+ FORMUL 5 HOH *230(H2 O) HELIX 1 AA1 GLN A 181 GLY A 185 5 5 HELIX 2 AA2 ARG A 208 ARG A 220 1 13 HELIX 3 AA3 THR A 230 LEU A 241 1 12 HELIX 4 AA4 HIS A 268 ARG A 275 1 8 HELIX 5 AA5 ASP A 296 GLU A 312 1 17 HELIX 6 AA6 PHE A 354 TYR A 360 1 7 HELIX 7 AA7 SER A 370 LYS A 384 1 15 HELIX 8 AA8 THR A 395 LYS A 407 1 13 HELIX 9 AA9 ASP A 415 GLU A 418 5 4 HELIX 10 AB1 THR A 453 GLY A 462 1 10 HELIX 11 AB2 LEU A 487 ASP A 498 1 12 HELIX 12 AB3 TYR A 511 MET A 518 5 8 HELIX 13 AB4 THR A 528 CYS A 542 1 15 HELIX 14 AB5 THR A 545 VAL A 556 1 12 HELIX 15 AB6 ARG A 562 TRP A 566 5 5 HELIX 16 AB7 PRO A 569 ALA A 573 5 5 HELIX 17 AB8 ASP A 600 PHE A 604 5 5 HELIX 18 AB9 ASP A 609 SER A 618 1 10 SHEET 1 AA1 6 ILE A 194 ASP A 198 0 SHEET 2 AA1 6 ALA A 316 THR A 321 1 O LEU A 319 N LEU A 197 SHEET 3 AA1 6 VAL A 286 ASP A 290 1 N MET A 289 O VAL A 318 SHEET 4 AA1 6 THR A 224 ALA A 228 1 N LEU A 225 O VAL A 286 SHEET 5 AA1 6 VAL A 263 CYS A 267 1 O ASP A 264 N VAL A 226 SHEET 6 AA1 6 ARG A 247 PHE A 248 1 N ARG A 247 O VAL A 263 SHEET 1 AA2 6 ALA A 337 GLU A 342 0 SHEET 2 AA2 6 THR A 471 TYR A 476 1 O ASP A 472 N THR A 339 SHEET 3 AA2 6 ARG A 427 ASP A 430 1 N VAL A 428 O ILE A 475 SHEET 4 AA2 6 THR A 364 PHE A 367 1 N PHE A 367 O ILE A 429 SHEET 5 AA2 6 PHE A 410 THR A 413 1 O VAL A 411 N TRP A 366 SHEET 6 AA2 6 VAL A 388 LEU A 391 1 N LEU A 391 O VAL A 412 SHEET 1 AA3 2 THR A 433 ASN A 434 0 SHEET 2 AA3 2 ARG A 450 ARG A 451 -1 O ARG A 450 N ASN A 434 SHEET 1 AA4 2 GLU A 438 VAL A 440 0 SHEET 2 AA4 2 LYS A 443 GLU A 445 -1 O GLU A 445 N GLU A 438 SHEET 1 AA5 2 THR A 583 ARG A 585 0 SHEET 2 AA5 2 GLU A 591 THR A 593 -1 O ARG A 592 N PHE A 584 LINK OG1 THR A 206 MN MN A 803 1555 1555 2.42 LINK O3G ANP A 801 MN MN A 803 1555 1555 1.98 LINK O2B ANP A 801 MN MN A 803 1555 1555 2.73 LINK O2A ANP A 801 MN MN A 803 1555 1555 2.31 LINK NA NA A 802 O HOH A 981 1555 1555 3.13 LINK NA NA A 802 O HOH A 995 1555 1555 2.95 LINK NA NA A 802 O HOH A1030 1555 7465 3.03 LINK MN MN A 803 O HOH A 901 1555 1555 1.98 LINK MN MN A 803 O HOH A 956 1555 1555 2.03 LINK MN MN A 803 O HOH A 989 1555 1555 2.20 CISPEP 1 PRO A 506 VAL A 507 0 -18.39 CRYST1 72.952 72.952 196.450 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013708 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013708 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005090 0.00000