HEADER VIRAL PROTEIN 22-JAN-21 7BNV TITLE CRYSTAL STRUCTURE OF THE SARS-COV-2 RECEPTOR BINDING DOMAIN IN COMPLEX TITLE 2 WITH ANTIBODY ION-300 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SURFACE GLYCOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEAVY CHAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: LIGHT CHAIN; COMPND 11 CHAIN: L; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 21 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 9606 KEYWDS ANTIBODY IMMUNE SYSTEM, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR G.HALL,R.COWAN,M.CARR REVDAT 2 31-JAN-24 7BNV 1 REMARK REVDAT 1 17-NOV-21 7BNV 0 JRNL AUTH G.BULLEN,J.D.GALSON,G.HALL,P.VILLAR,L.MOREELS,L.LEDSGAARD, JRNL AUTH 2 G.MATTIUZZO,E.M.BENTLEY,E.W.MASTERS,D.TANG,S.MILLETT, JRNL AUTH 3 D.TONGUE,R.BROWN,I.DIAMANTOPOULOS,K.PARTHIBAN,C.TEBBUTT, JRNL AUTH 4 R.LEAH,K.CHAITANYA,S.ERGUETA-CARBALLO,D.PAZERAITIS, JRNL AUTH 5 S.B.SURADE,O.ASHIRU,L.CRIPPA,R.COWAN,M.W.BOWLER, JRNL AUTH 6 J.I.CAMPBELL,W.J.LEE,M.D.CARR,D.MATTHEWS,P.PFEFFER, JRNL AUTH 7 S.E.HUFTON,K.SAWMYNADEN,J.OSBOURN,J.MCCAFFERTY, JRNL AUTH 8 A.KARATT-VELLATT JRNL TITL CROSS-REACTIVE SARS-COV-2 NEUTRALIZING ANTIBODIES FROM DEEP JRNL TITL 2 MINING OF EARLY PATIENT RESPONSES. JRNL REF FRONT IMMUNOL V. 12 78570 2021 JRNL REFN ESSN 1664-3224 JRNL PMID 34211469 JRNL DOI 10.3389/FIMMU.2021.678570 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18.2_3874 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.23 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 32446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.224 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.150 REMARK 3 FREE R VALUE TEST SET COUNT : 3293 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.2300 - 6.7700 0.94 1196 115 0.1998 0.2618 REMARK 3 2 6.7700 - 5.3800 0.96 1181 126 0.2045 0.2426 REMARK 3 3 5.3700 - 4.7000 0.99 1212 146 0.1862 0.2199 REMARK 3 4 4.7000 - 4.2700 0.99 1256 133 0.1735 0.2050 REMARK 3 5 4.2700 - 3.9600 0.99 1208 128 0.1959 0.2211 REMARK 3 6 3.9600 - 3.7300 0.99 1224 132 0.2014 0.2560 REMARK 3 7 3.7300 - 3.5400 0.99 1222 138 0.2164 0.2286 REMARK 3 8 3.5400 - 3.3900 0.99 1216 126 0.2399 0.2740 REMARK 3 9 3.3900 - 3.2600 0.98 1216 131 0.2344 0.2976 REMARK 3 10 3.2600 - 3.1500 0.99 1228 108 0.2685 0.2887 REMARK 3 11 3.1500 - 3.0500 1.00 1242 133 0.2598 0.3369 REMARK 3 12 3.0500 - 2.9600 1.00 1194 153 0.2597 0.3015 REMARK 3 13 2.9600 - 2.8800 1.00 1207 123 0.2619 0.3474 REMARK 3 14 2.8800 - 2.8100 1.00 1264 142 0.2867 0.3191 REMARK 3 15 2.8100 - 2.7500 0.99 1184 145 0.2663 0.3102 REMARK 3 16 2.7500 - 2.6900 0.99 1189 158 0.2831 0.3341 REMARK 3 17 2.6900 - 2.6400 1.00 1197 167 0.2748 0.2923 REMARK 3 18 2.6400 - 2.5900 1.00 1227 120 0.2725 0.3328 REMARK 3 19 2.5900 - 2.5400 1.00 1223 166 0.2888 0.3013 REMARK 3 20 2.5400 - 2.5000 1.00 1169 157 0.3094 0.3210 REMARK 3 21 2.5000 - 2.4600 1.00 1244 141 0.2974 0.3380 REMARK 3 22 2.4600 - 2.4200 1.00 1201 132 0.3059 0.3593 REMARK 3 23 2.4200 - 2.3800 1.00 1231 143 0.3259 0.3697 REMARK 3 24 2.3800 - 2.3500 1.00 1222 130 0.3225 0.3575 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.353 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 29.591 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.48 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 4942 REMARK 3 ANGLE : 0.819 6742 REMARK 3 CHIRALITY : 0.055 741 REMARK 3 PLANARITY : 0.007 870 REMARK 3 DIHEDRAL : 13.035 693 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BNV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 22-JAN-21. REMARK 100 THE DEPOSITION ID IS D_1292113397. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-NOV-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : MASSIF-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.96861 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32467 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 40.230 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.3400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6M0J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16% PEG3350 0.3 M POTASSIUM CITRATE REMARK 280 TRIBASIC, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.55450 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.33175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.77725 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -31.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, H, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 319 REMARK 465 VAL A 320 REMARK 465 GLN A 321 REMARK 465 PRO A 322 REMARK 465 THR A 323 REMARK 465 GLU A 324 REMARK 465 SER A 325 REMARK 465 ILE A 326 REMARK 465 VAL A 327 REMARK 465 ARG A 328 REMARK 465 PHE A 329 REMARK 465 PRO A 330 REMARK 465 ASN A 331 REMARK 465 ILE A 332 REMARK 465 THR A 333 REMARK 465 LYS A 528 REMARK 465 LYS A 529 REMARK 465 SER A 530 REMARK 465 THR A 531 REMARK 465 ASN A 532 REMARK 465 LEU A 533 REMARK 465 VAL A 534 REMARK 465 LYS A 535 REMARK 465 ASN A 536 REMARK 465 LYS A 537 REMARK 465 CYS A 538 REMARK 465 VAL A 539 REMARK 465 ASN A 540 REMARK 465 PHE A 541 REMARK 465 ALA A 542 REMARK 465 ALA A 543 REMARK 465 ALA A 544 REMARK 465 GLY A 545 REMARK 465 SER A 546 REMARK 465 HIS A 547 REMARK 465 HIS A 548 REMARK 465 HIS A 549 REMARK 465 HIS A 550 REMARK 465 HIS A 551 REMARK 465 HIS A 552 REMARK 465 LYS H 143 REMARK 465 SER H 144 REMARK 465 THR H 145 REMARK 465 SER H 146 REMARK 465 GLY H 147 REMARK 465 SER H 229 REMARK 465 CYS H 230 REMARK 465 ALA L -1 REMARK 465 SER L 0 REMARK 465 CYS L 217 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 340 CG CD OE1 OE2 REMARK 470 TYR A 369 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS A 386 CG CD CE NZ REMARK 470 LYS A 444 CG CD CE NZ REMARK 470 ASN A 481 CG OD1 ND2 REMARK 470 GLN A 498 CG CD OE1 NE2 REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 LYS H 215 CG CD CE NZ REMARK 470 LYS H 223 CG CD CE NZ REMARK 470 LYS H 224 CG CD CE NZ REMARK 470 GLU H 226 CG CD OE1 OE2 REMARK 470 LYS H 228 CG CD CE NZ REMARK 470 ARG L 46 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 106 CG CD CE NZ REMARK 470 LEU L 128 CG CD1 CD2 REMARK 470 ARG L 145 CG CD NE CZ NH1 NH2 REMARK 470 LYS L 172 CG CD CE NZ REMARK 470 LYS L 191 CG CD CE NZ REMARK 470 LYS L 193 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS H 13 C - N - CA ANGL. DEV. = 15.4 DEGREES REMARK 500 PRO H 163 C - N - CA ANGL. DEV. = 14.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 370 55.52 -98.45 REMARK 500 PHE A 377 89.78 -158.82 REMARK 500 ASP A 389 63.70 -117.77 REMARK 500 ASP A 428 30.55 -91.20 REMARK 500 SER A 443 99.69 -161.82 REMARK 500 ASP H 158 78.87 60.10 REMARK 500 PRO H 161 -168.13 -79.12 REMARK 500 SER H 187 9.74 -68.56 REMARK 500 ALA L 52 -25.30 74.74 REMARK 500 SER L 53 -1.12 -141.05 REMARK 500 ALA L 85 -163.72 -160.59 REMARK 500 TYR L 92 47.15 -146.33 REMARK 500 ASP L 125 -54.43 63.84 REMARK 500 ASN L 141 75.23 53.42 REMARK 500 REMARK 500 REMARK: NULL DBREF1 7BNV A 319 541 UNP A0A6M5UN06_SARS2 DBREF2 7BNV A A0A6M5UN06 319 541 DBREF 7BNV H 1 230 PDB 7BNV 7BNV 1 230 DBREF 7BNV L -1 217 PDB 7BNV 7BNV -1 217 SEQADV 7BNV ALA A 542 UNP A0A6M5UN0 EXPRESSION TAG SEQADV 7BNV ALA A 543 UNP A0A6M5UN0 EXPRESSION TAG SEQADV 7BNV ALA A 544 UNP A0A6M5UN0 EXPRESSION TAG SEQADV 7BNV GLY A 545 UNP A0A6M5UN0 EXPRESSION TAG SEQADV 7BNV SER A 546 UNP A0A6M5UN0 EXPRESSION TAG SEQADV 7BNV HIS A 547 UNP A0A6M5UN0 EXPRESSION TAG SEQADV 7BNV HIS A 548 UNP A0A6M5UN0 EXPRESSION TAG SEQADV 7BNV HIS A 549 UNP A0A6M5UN0 EXPRESSION TAG SEQADV 7BNV HIS A 550 UNP A0A6M5UN0 EXPRESSION TAG SEQADV 7BNV HIS A 551 UNP A0A6M5UN0 EXPRESSION TAG SEQADV 7BNV HIS A 552 UNP A0A6M5UN0 EXPRESSION TAG SEQRES 1 A 234 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 2 A 234 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 3 A 234 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 4 A 234 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 5 A 234 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 6 A 234 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 7 A 234 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 8 A 234 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 9 A 234 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 10 A 234 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 11 A 234 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 12 A 234 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 13 A 234 ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN SEQRES 14 A 234 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 15 A 234 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 16 A 234 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 17 A 234 PRO LYS LYS SER THR ASN LEU VAL LYS ASN LYS CYS VAL SEQRES 18 A 234 ASN PHE ALA ALA ALA GLY SER HIS HIS HIS HIS HIS HIS SEQRES 1 H 230 GLN VAL GLN LEU VAL GLN SER GLY ALA GLU VAL LYS LYS SEQRES 2 H 230 PRO GLY GLU SER LEU LYS ILE SER CYS LYS GLY SER GLY SEQRES 3 H 230 TYR SER PHE THR SER TYR TRP ILE GLY TRP VAL ARG GLN SEQRES 4 H 230 MET PRO GLY LYS GLY LEU GLU TRP MET GLY ILE ILE TYR SEQRES 5 H 230 PRO GLY ASP SER ASP THR ARG TYR SER PRO SER PHE GLN SEQRES 6 H 230 GLY GLN VAL THR ILE SER ALA ASP LYS SER ILE SER THR SEQRES 7 H 230 ALA TYR LEU GLN TRP SER SER LEU LYS ALA SER ASP THR SEQRES 8 H 230 ALA MET TYR TYR CYS ALA ARG HIS PRO SER PRO TYR TYR SEQRES 9 H 230 TYR GLY SER GLY SER TYR SER GLY GLY PHE ASP TYR TRP SEQRES 10 H 230 GLY GLN GLY THR LEU VAL THR VAL SER SER ALA SER THR SEQRES 11 H 230 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 H 230 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 H 230 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 H 230 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 H 230 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 H 230 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 H 230 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 H 230 ASP LYS LYS VAL GLU PRO LYS SER CYS SEQRES 1 L 219 ALA SER ASP ILE VAL MET THR GLN SER PRO GLY THR LEU SEQRES 2 L 219 SER LEU SER PRO GLY GLU ARG ALA THR LEU SER CYS ARG SEQRES 3 L 219 ALA SER GLN SER VAL SER SER SER TYR LEU ALA TRP TYR SEQRES 4 L 219 GLN GLN LYS PRO GLY GLN ALA PRO ARG LEU LEU ILE TYR SEQRES 5 L 219 GLY ALA SER THR ARG ALA THR GLY ILE PRO ALA ARG PHE SEQRES 6 L 219 SER GLY SER GLY SER GLY THR GLU PHE THR LEU THR ILE SEQRES 7 L 219 SER SER LEU GLN SER GLU ASP PHE ALA VAL TYR TYR CYS SEQRES 8 L 219 GLN GLN TYR ASP ASN TRP PRO LEU MET HIS THR PHE GLY SEQRES 9 L 219 GLN GLY THR LYS LEU GLU ILE LYS ARG THR ALA ALA ALA SEQRES 10 L 219 PRO SER VAL PHE ILE PHE PRO PRO SER ASP GLU GLN LEU SEQRES 11 L 219 LYS SER GLY THR ALA SER VAL VAL CYS LEU LEU ASN ASN SEQRES 12 L 219 PHE TYR PRO ARG GLU ALA LYS VAL GLN TRP LYS VAL ASP SEQRES 13 L 219 ASN ALA LEU GLN SER GLY ASN SER GLN GLU SER VAL THR SEQRES 14 L 219 GLU GLN ASP SER LYS ASP SER THR TYR SER LEU SER SER SEQRES 15 L 219 THR LEU THR LEU SER LYS ALA ASP TYR GLU LYS HIS LYS SEQRES 16 L 219 LEU TYR ALA CYS GLU VAL THR HIS GLN GLY LEU SER SER SEQRES 17 L 219 PRO VAL THR LYS SER PHE ASN ARG GLY GLU CYS HET NAG A 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 FORMUL 5 HOH *165(H2 O) HELIX 1 AA1 PHE A 338 ASN A 343 1 6 HELIX 2 AA2 SER A 349 TRP A 353 5 5 HELIX 3 AA3 TYR A 365 ASN A 370 1 6 HELIX 4 AA4 PRO A 384 ASN A 388 5 5 HELIX 5 AA5 ASP A 405 ILE A 410 5 6 HELIX 6 AA6 GLY A 416 ASN A 422 1 7 HELIX 7 AA7 SER H 28 TYR H 32 5 5 HELIX 8 AA8 LYS H 74 ILE H 76 5 3 HELIX 9 AA9 LYS H 87 THR H 91 5 5 HELIX 10 AB1 SER H 201 LEU H 203 5 3 HELIX 11 AB2 LYS H 215 ASN H 218 5 4 HELIX 12 AB3 GLN L 80 PHE L 84 5 5 HELIX 13 AB4 ASP L 125 SER L 130 1 6 HELIX 14 AB5 LYS L 186 LYS L 191 1 6 SHEET 1 AA1 5 ASN A 354 ILE A 358 0 SHEET 2 AA1 5 ASN A 394 ARG A 403 -1 O VAL A 395 N ILE A 358 SHEET 3 AA1 5 PRO A 507 GLU A 516 -1 O TYR A 508 N ILE A 402 SHEET 4 AA1 5 GLY A 431 ASN A 437 -1 N ILE A 434 O VAL A 511 SHEET 5 AA1 5 THR A 376 TYR A 380 -1 N TYR A 380 O GLY A 431 SHEET 1 AA2 2 CYS A 361 VAL A 362 0 SHEET 2 AA2 2 VAL A 524 CYS A 525 1 O CYS A 525 N CYS A 361 SHEET 1 AA3 2 LEU A 452 ARG A 454 0 SHEET 2 AA3 2 LEU A 492 SER A 494 -1 O GLN A 493 N TYR A 453 SHEET 1 AA4 2 TYR A 473 GLN A 474 0 SHEET 2 AA4 2 CYS A 488 TYR A 489 -1 O TYR A 489 N TYR A 473 SHEET 1 AA5 4 GLN H 3 GLN H 6 0 SHEET 2 AA5 4 LEU H 18 SER H 25 -1 O LYS H 23 N VAL H 5 SHEET 3 AA5 4 THR H 78 TRP H 83 -1 O ALA H 79 N CYS H 22 SHEET 4 AA5 4 THR H 69 ASP H 73 -1 N SER H 71 O TYR H 80 SHEET 1 AA6 6 GLU H 10 LYS H 12 0 SHEET 2 AA6 6 THR H 121 VAL H 125 1 O THR H 124 N LYS H 12 SHEET 3 AA6 6 ALA H 92 HIS H 99 -1 N ALA H 92 O VAL H 123 SHEET 4 AA6 6 TRP H 33 GLN H 39 -1 N VAL H 37 O TYR H 95 SHEET 5 AA6 6 GLU H 46 ILE H 51 -1 O ILE H 51 N ILE H 34 SHEET 6 AA6 6 THR H 58 TYR H 60 -1 O ARG H 59 N ILE H 50 SHEET 1 AA7 4 GLU H 10 LYS H 12 0 SHEET 2 AA7 4 THR H 121 VAL H 125 1 O THR H 124 N LYS H 12 SHEET 3 AA7 4 ALA H 92 HIS H 99 -1 N ALA H 92 O VAL H 123 SHEET 4 AA7 4 TYR H 116 TRP H 117 -1 O TYR H 116 N ARG H 98 SHEET 1 AA8 4 SER H 134 LEU H 138 0 SHEET 2 AA8 4 THR H 149 TYR H 159 -1 O LEU H 155 N PHE H 136 SHEET 3 AA8 4 TYR H 190 PRO H 199 -1 O VAL H 198 N ALA H 150 SHEET 4 AA8 4 VAL H 177 THR H 179 -1 N HIS H 178 O VAL H 195 SHEET 1 AA9 4 SER H 134 LEU H 138 0 SHEET 2 AA9 4 THR H 149 TYR H 159 -1 O LEU H 155 N PHE H 136 SHEET 3 AA9 4 TYR H 190 PRO H 199 -1 O VAL H 198 N ALA H 150 SHEET 4 AA9 4 VAL H 183 LEU H 184 -1 N VAL H 183 O SER H 191 SHEET 1 AB1 3 THR H 165 TRP H 168 0 SHEET 2 AB1 3 ILE H 209 HIS H 214 -1 O ASN H 211 N SER H 167 SHEET 3 AB1 3 THR H 219 LYS H 224 -1 O THR H 219 N HIS H 214 SHEET 1 AB2 4 MET L 4 SER L 7 0 SHEET 2 AB2 4 ALA L 19 ALA L 25 -1 O ARG L 24 N THR L 5 SHEET 3 AB2 4 GLU L 71 ILE L 76 -1 O LEU L 74 N LEU L 21 SHEET 4 AB2 4 PHE L 63 SER L 68 -1 N SER L 64 O THR L 75 SHEET 1 AB3 6 THR L 10 LEU L 13 0 SHEET 2 AB3 6 THR L 105 ILE L 109 1 O GLU L 108 N LEU L 13 SHEET 3 AB3 6 VAL L 86 GLN L 91 -1 N TYR L 87 O THR L 105 SHEET 4 AB3 6 LEU L 34 GLN L 39 -1 N GLN L 39 O VAL L 86 SHEET 5 AB3 6 ARG L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 AB3 6 THR L 54 ARG L 55 -1 O THR L 54 N TYR L 50 SHEET 1 AB4 4 THR L 10 LEU L 13 0 SHEET 2 AB4 4 THR L 105 ILE L 109 1 O GLU L 108 N LEU L 13 SHEET 3 AB4 4 VAL L 86 GLN L 91 -1 N TYR L 87 O THR L 105 SHEET 4 AB4 4 THR L 100 PHE L 101 -1 O THR L 100 N GLN L 91 SHEET 1 AB5 4 SER L 117 PHE L 121 0 SHEET 2 AB5 4 THR L 132 PHE L 142 -1 O LEU L 138 N PHE L 119 SHEET 3 AB5 4 TYR L 176 SER L 185 -1 O LEU L 178 N LEU L 139 SHEET 4 AB5 4 SER L 162 VAL L 166 -1 N GLN L 163 O THR L 181 SHEET 1 AB6 3 LYS L 148 VAL L 153 0 SHEET 2 AB6 3 LEU L 194 THR L 200 -1 O ALA L 196 N LYS L 152 SHEET 3 AB6 3 VAL L 208 ASN L 213 -1 O VAL L 208 N VAL L 199 SSBOND 1 CYS A 336 CYS A 361 1555 1555 2.03 SSBOND 2 CYS A 379 CYS A 432 1555 1555 2.03 SSBOND 3 CYS A 391 CYS A 525 1555 1555 2.03 SSBOND 4 CYS A 480 CYS A 488 1555 1555 2.03 SSBOND 5 CYS H 22 CYS H 96 1555 1555 2.03 SSBOND 6 CYS H 154 CYS H 210 1555 1555 2.03 SSBOND 7 CYS L 23 CYS L 89 1555 1555 2.04 SSBOND 8 CYS L 137 CYS L 197 1555 1555 2.03 LINK ND2 ASN A 343 C1 NAG A 601 1555 1555 1.44 CISPEP 1 PHE H 160 PRO H 161 0 -2.08 CISPEP 2 GLU H 162 PRO H 163 0 1.37 CISPEP 3 SER L 7 PRO L 8 0 -2.38 CISPEP 4 TRP L 95 PRO L 96 0 1.10 CISPEP 5 TYR L 143 PRO L 144 0 0.31 CRYST1 74.861 74.861 143.109 90.00 90.00 90.00 P 43 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013358 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013358 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006988 0.00000