HEADER VIRAL PROTEIN 24-MAR-20 7BQ7 TITLE CRYSTAL STRUCTURE OF 2019-NCOV NSP16-NSP10 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2'-O-METHYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PP1AB,ORF1AB POLYPROTEIN,NON-STRUCTURAL PROTEIN 16,NSP16, COMPND 5 SARS-COV-2 NSP16; COMPND 6 EC: 2.1.1.-; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: SAH; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: NON-STRUCTURAL PROTEIN 10; COMPND 11 CHAIN: B; COMPND 12 SYNONYM: PP1AB,ORF1AB POLYPROTEIN,NSP10,GROWTH FACTOR-LIKE PEPTIDE, COMPND 13 GFL,SARS-COV-2 NSP10; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: REP, 1A-1B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 12 2; SOURCE 13 ORGANISM_COMMON: 2019-NCOV; SOURCE 14 ORGANISM_TAXID: 2697049; SOURCE 15 GENE: REP, 1A-1B; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS 2019-NCOV, 2'-O-METHYL TRANSFERASE, NSP16 AND NSP10, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.M.YAN,Y.C.HUANG,Z.Y.LOU,Z.H.RAO REVDAT 3 27-MAR-24 7BQ7 1 REMARK REVDAT 2 10-MAR-21 7BQ7 1 COMPND REVDAT 1 17-JUN-20 7BQ7 0 JRNL AUTH L.M.YAN,Y.C.HUANG,Z.Y.LOU,Z.H.RAO JRNL TITL CRYSTAL STRUCTURE OF 2019-NCOV NSP16-NSP10 COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.18RC3_3805 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.22 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 35266 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.950 REMARK 3 FREE R VALUE TEST SET COUNT : 1746 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.2200 - 5.4200 0.99 2925 127 0.1655 0.1638 REMARK 3 2 5.4200 - 4.3100 1.00 2832 149 0.1446 0.1492 REMARK 3 3 4.3100 - 3.7600 1.00 2835 123 0.1523 0.2096 REMARK 3 4 3.7600 - 3.4200 1.00 2834 133 0.1821 0.2164 REMARK 3 5 3.4200 - 3.1700 1.00 2790 141 0.2023 0.2410 REMARK 3 6 3.1700 - 2.9900 1.00 2810 140 0.2139 0.2734 REMARK 3 7 2.9900 - 2.8400 1.00 2764 169 0.2061 0.2602 REMARK 3 8 2.8400 - 2.7100 1.00 2787 135 0.2098 0.2082 REMARK 3 9 2.7100 - 2.6100 0.97 2666 153 0.2279 0.2884 REMARK 3 10 2.6100 - 2.5200 1.00 2784 153 0.2206 0.2501 REMARK 3 11 2.5200 - 2.4400 1.00 2764 153 0.2360 0.2601 REMARK 3 12 2.4400 - 2.3700 1.00 2729 170 0.2573 0.3002 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BQ7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300016295. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9785 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35306 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.370 REMARK 200 RESOLUTION RANGE LOW (A) : 85.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 18.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 72.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.4 M MAGNESIUM FORMATE DIHYDRATE, 0.1 REMARK 280 M SODIUM ACETATE TRIHYDRATE PH 4.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 17.40600 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.81200 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.81200 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 17.40600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 298 REMARK 465 ALA B 1 REMARK 465 GLY B 2 REMARK 465 ASN B 3 REMARK 465 ALA B 4 REMARK 465 THR B 5 REMARK 465 GLU B 6 REMARK 465 VAL B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 ASN B 10 REMARK 465 SER B 11 REMARK 465 THR B 12 REMARK 465 VAL B 13 REMARK 465 LEU B 14 REMARK 465 SER B 15 REMARK 465 PHE B 16 REMARK 465 CYS B 17 REMARK 465 ASP B 131 REMARK 465 GLN B 132 REMARK 465 LEU B 133 REMARK 465 ARG B 134 REMARK 465 GLU B 135 REMARK 465 PRO B 136 REMARK 465 MET B 137 REMARK 465 LEU B 138 REMARK 465 GLN B 139 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS B 90 ZN ZN B 201 1.69 REMARK 500 ND2 ASN A 43 OXT SAM A 301 1.91 REMARK 500 O HOH B 309 O HOH B 315 1.92 REMARK 500 O HOH A 478 O HOH A 479 1.94 REMARK 500 O THR A 140 O HOH A 401 2.08 REMARK 500 O SER A 2 O HOH A 402 2.12 REMARK 500 O HOH A 403 O HOH A 421 2.15 REMARK 500 O LYS B 124 O HOH B 301 2.18 REMARK 500 O HOH B 316 O HOH B 318 2.18 REMARK 500 NH2 ARG A 255 O GLY A 278 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 120 CB CYS B 120 SG -0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 239 CA - CB - CG ANGL. DEV. = -14.2 DEGREES REMARK 500 CYS B 74 CA - CB - SG ANGL. DEV. = -16.1 DEGREES REMARK 500 PRO B 86 C - N - CA ANGL. DEV. = 11.6 DEGREES REMARK 500 CYS B 117 CA - CB - SG ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 147 -116.48 -101.35 REMARK 500 ASN A 210 89.60 66.41 REMARK 500 GLU A 264 -134.41 66.38 REMARK 500 ASN B 85 134.94 -171.73 REMARK 500 PRO B 86 -59.87 -23.17 REMARK 500 TYR B 126 49.49 -150.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 213 LYS A 214 -144.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 ZN B 200 REMARK 615 ZN B 201 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 200 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 117 SG REMARK 620 2 CYS B 130 SG 111.5 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 301 DBREF 7BQ7 A 1 298 UNP P0DTD1 R1AB_SARS2 6799 7096 DBREF 7BQ7 B 1 139 UNP P0DTD1 R1AB_SARS2 4254 4392 SEQADV 7BQ7 ARG B 113 UNP P0DTD1 LYS 4366 CONFLICT SEQRES 1 A 298 SER SER GLN ALA TRP GLN PRO GLY VAL ALA MET PRO ASN SEQRES 2 A 298 LEU TYR LYS MET GLN ARG MET LEU LEU GLU LYS CYS ASP SEQRES 3 A 298 LEU GLN ASN TYR GLY ASP SER ALA THR LEU PRO LYS GLY SEQRES 4 A 298 ILE MET MET ASN VAL ALA LYS TYR THR GLN LEU CYS GLN SEQRES 5 A 298 TYR LEU ASN THR LEU THR LEU ALA VAL PRO TYR ASN MET SEQRES 6 A 298 ARG VAL ILE HIS PHE GLY ALA GLY SER ASP LYS GLY VAL SEQRES 7 A 298 ALA PRO GLY THR ALA VAL LEU ARG GLN TRP LEU PRO THR SEQRES 8 A 298 GLY THR LEU LEU VAL ASP SER ASP LEU ASN ASP PHE VAL SEQRES 9 A 298 SER ASP ALA ASP SER THR LEU ILE GLY ASP CYS ALA THR SEQRES 10 A 298 VAL HIS THR ALA ASN LYS TRP ASP LEU ILE ILE SER ASP SEQRES 11 A 298 MET TYR ASP PRO LYS THR LYS ASN VAL THR LYS GLU ASN SEQRES 12 A 298 ASP SER LYS GLU GLY PHE PHE THR TYR ILE CYS GLY PHE SEQRES 13 A 298 ILE GLN GLN LYS LEU ALA LEU GLY GLY SER VAL ALA ILE SEQRES 14 A 298 LYS ILE THR GLU HIS SER TRP ASN ALA ASP LEU TYR LYS SEQRES 15 A 298 LEU MET GLY HIS PHE ALA TRP TRP THR ALA PHE VAL THR SEQRES 16 A 298 ASN VAL ASN ALA SER SER SER GLU ALA PHE LEU ILE GLY SEQRES 17 A 298 CYS ASN TYR LEU GLY LYS PRO ARG GLU GLN ILE ASP GLY SEQRES 18 A 298 TYR VAL MET HIS ALA ASN TYR ILE PHE TRP ARG ASN THR SEQRES 19 A 298 ASN PRO ILE GLN LEU SER SER TYR SER LEU PHE ASP MET SEQRES 20 A 298 SER LYS PHE PRO LEU LYS LEU ARG GLY THR ALA VAL MET SEQRES 21 A 298 SER LEU LYS GLU GLY GLN ILE ASN ASP MET ILE LEU SER SEQRES 22 A 298 LEU LEU SER LYS GLY ARG LEU ILE ILE ARG GLU ASN ASN SEQRES 23 A 298 ARG VAL VAL ILE SER SER ASP VAL LEU VAL ASN ASN SEQRES 1 B 139 ALA GLY ASN ALA THR GLU VAL PRO ALA ASN SER THR VAL SEQRES 2 B 139 LEU SER PHE CYS ALA PHE ALA VAL ASP ALA ALA LYS ALA SEQRES 3 B 139 TYR LYS ASP TYR LEU ALA SER GLY GLY GLN PRO ILE THR SEQRES 4 B 139 ASN CYS VAL LYS MET LEU CYS THR HIS THR GLY THR GLY SEQRES 5 B 139 GLN ALA ILE THR VAL THR PRO GLU ALA ASN MET ASP GLN SEQRES 6 B 139 GLU SER PHE GLY GLY ALA SER CYS CYS LEU TYR CYS ARG SEQRES 7 B 139 CYS HIS ILE ASP HIS PRO ASN PRO LYS GLY PHE CYS ASP SEQRES 8 B 139 LEU LYS GLY LYS TYR VAL GLN ILE PRO THR THR CYS ALA SEQRES 9 B 139 ASN ASP PRO VAL GLY PHE THR LEU ARG ASN THR VAL CYS SEQRES 10 B 139 THR VAL CYS GLY MET TRP LYS GLY TYR GLY CYS SER CYS SEQRES 11 B 139 ASP GLN LEU ARG GLU PRO MET LEU GLN HET SAM A 301 27 HET ZN B 200 1 HET ZN B 201 1 HETNAM SAM S-ADENOSYLMETHIONINE HETNAM ZN ZINC ION FORMUL 3 SAM C15 H22 N6 O5 S FORMUL 4 ZN 2(ZN 2+) FORMUL 6 HOH *99(H2 O) HELIX 1 AA1 PRO A 12 MET A 17 1 6 HELIX 2 AA2 MET A 41 ASN A 55 1 15 HELIX 3 AA3 ALA A 79 LEU A 89 1 11 HELIX 4 AA4 ASP A 114 ALA A 116 5 3 HELIX 5 AA5 ASP A 133 LYS A 137 5 5 HELIX 6 AA6 GLY A 148 LYS A 160 1 13 HELIX 7 AA7 ASN A 177 GLY A 185 1 9 HELIX 8 AA8 VAL A 197 ALA A 199 5 3 HELIX 9 AA9 ASP A 220 ASN A 235 1 16 HELIX 10 AB1 SER A 241 ASP A 246 5 6 HELIX 11 AB2 LYS A 263 ILE A 267 5 5 HELIX 12 AB3 ASN A 268 LYS A 277 1 10 HELIX 13 AB4 ASP B 22 SER B 33 1 12 HELIX 14 AB5 ALA B 71 CYS B 73 5 3 HELIX 15 AB6 CYS B 74 HIS B 80 1 7 HELIX 16 AB7 THR B 102 ALA B 104 5 3 HELIX 17 AB8 ASP B 106 ASN B 114 1 9 SHEET 1 AA1 8 GLY A 8 ALA A 10 0 SHEET 2 AA1 8 PHE A 187 THR A 195 -1 O VAL A 194 N VAL A 9 SHEET 3 AA1 8 ALA A 204 TYR A 211 -1 O CYS A 209 N TRP A 189 SHEET 4 AA1 8 LEU A 161 ILE A 171 -1 N ILE A 169 O LEU A 206 SHEET 5 AA1 8 TRP A 124 SER A 129 1 N TRP A 124 O ALA A 162 SHEET 6 AA1 8 ARG A 66 PHE A 70 1 N PHE A 70 O ILE A 128 SHEET 7 AA1 8 LEU A 94 ASP A 99 1 O LEU A 94 N VAL A 67 SHEET 8 AA1 8 SER A 109 ILE A 112 1 O SER A 109 N ASP A 97 SHEET 1 AA2 2 VAL A 118 THR A 120 0 SHEET 2 AA2 2 ILE A 290 SER A 292 -1 O SER A 291 N HIS A 119 SHEET 1 AA3 2 ALA A 258 MET A 260 0 SHEET 2 AA3 2 LEU A 280 ILE A 282 1 O ILE A 281 N MET A 260 SHEET 1 AA4 3 ILE B 55 THR B 56 0 SHEET 2 AA4 3 TYR B 96 PRO B 100 -1 O TYR B 96 N THR B 56 SHEET 3 AA4 3 GLN B 65 GLY B 69 -1 N GLU B 66 O ILE B 99 LINK NE2 HIS B 83 ZN ZN B 201 1555 1555 2.16 LINK SG CYS B 117 ZN ZN B 200 1555 1555 1.96 LINK SG CYS B 130 ZN ZN B 200 1555 1555 2.22 SITE 1 AC1 17 ASN A 43 TYR A 47 GLY A 71 ALA A 72 SITE 2 AC1 17 GLY A 73 PRO A 80 GLY A 81 ASP A 99 SITE 3 AC1 17 LEU A 100 ASN A 101 ASP A 114 CYS A 115 SITE 4 AC1 17 ASP A 130 MET A 131 TYR A 132 PHE A 149 SITE 5 AC1 17 HOH A 411 CRYST1 170.156 170.156 52.218 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005877 0.003393 0.000000 0.00000 SCALE2 0.000000 0.006786 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019150 0.00000