HEADER HYDROLASE 27-MAR-20 7BRD TITLE CRYSTAL STRUCTURE OF PEPTIDYL-TRNA HYDROLASE FROM KLEBSIELLA TITLE 2 PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-TRNA HYDROLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PTH; COMPND 5 EC: 3.1.1.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: PTH, BL124_00016980, EAO17_03025, F3P37_02700, SOURCE 5 SAMEA3538476_04832, SK89_03098; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROLASE, TRNA-BINDING, ANTIBIOTIC TARGET EXPDTA X-RAY DIFFRACTION AUTHOR S.MUNDRA,M.ZOHIB,R.K.PAL,B.K.BISWAL,A.ARORA REVDAT 2 29-NOV-23 7BRD 1 REMARK REVDAT 1 17-MAR-21 7BRD 0 JRNL AUTH S.MUNDRA,R.K.PAL,S.TRIPATHI,A.JAIN,A.ARORA JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF PEPTIDYL-TRNA JRNL TITL 2 HYDROLASE FROM KLEBSIELLA PNEUMONIAE. JRNL REF BIOCHIM BIOPHYS ACTA V.1869 40554 2021 JRNL REF 2 PROTEINS PROTEOM JRNL REFN ISSN 1878-1454 JRNL PMID 33068756 JRNL DOI 10.1016/J.BBAPAP.2020.140554 REMARK 2 REMARK 2 RESOLUTION. 1.89 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.89 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 31852 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.825 REMARK 3 FREE R VALUE TEST SET COUNT : 1537 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.89 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.94 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2055 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3230 REMARK 3 BIN FREE R VALUE SET COUNT : 113 REMARK 3 BIN FREE R VALUE : 0.3890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2877 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 120 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.06 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.34800 REMARK 3 B22 (A**2) : 0.07100 REMARK 3 B33 (A**2) : 0.27700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.141 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.264 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3045 ; 0.014 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 2853 ; 0.001 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4093 ; 1.792 ; 1.644 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6578 ; 1.483 ; 1.572 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 389 ; 6.721 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 134 ;31.923 ;22.015 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 456 ;12.594 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;16.704 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 384 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3413 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 607 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 624 ; 0.217 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 38 ; 0.229 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1493 ; 0.165 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 198 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1561 ; 1.462 ; 1.724 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1557 ; 1.441 ; 1.717 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1937 ; 2.259 ; 2.553 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1938 ; 2.259 ; 2.555 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1484 ; 1.972 ; 1.965 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1485 ; 1.971 ; 1.967 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2154 ; 2.928 ; 2.816 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2155 ; 2.927 ; 2.818 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 712 REMARK 3 ORIGIN FOR THE GROUP (A): -6.4190 -6.3588 26.5727 REMARK 3 T TENSOR REMARK 3 T11: 0.0007 T22: 0.0633 REMARK 3 T33: 0.0467 T12: -0.0006 REMARK 3 T13: -0.0014 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.4400 L22: 0.2528 REMARK 3 L33: 0.4802 L12: -0.0284 REMARK 3 L13: -0.0306 L23: -0.1615 REMARK 3 S TENSOR REMARK 3 S11: 0.0139 S12: 0.0003 S13: 0.0030 REMARK 3 S21: -0.0056 S22: 0.0028 S23: 0.0006 REMARK 3 S31: -0.0044 S32: 0.0168 S33: -0.0167 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 308 REMARK 3 ORIGIN FOR THE GROUP (A): -28.8598 15.6550 22.0288 REMARK 3 T TENSOR REMARK 3 T11: 0.0062 T22: 0.0758 REMARK 3 T33: 0.0489 T12: 0.0081 REMARK 3 T13: -0.0013 T23: 0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.1299 L22: 0.1708 REMARK 3 L33: 0.2325 L12: -0.3054 REMARK 3 L13: 0.0391 L23: 0.0989 REMARK 3 S TENSOR REMARK 3 S11: -0.0455 S12: -0.0886 S13: 0.0352 REMARK 3 S21: 0.0053 S22: 0.0132 S23: -0.0304 REMARK 3 S31: -0.0092 S32: -0.0420 S33: 0.0324 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7BRD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 31-MAR-20. REMARK 100 THE DEPOSITION ID IS D_1300015479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-DEC-19 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31852 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.890 REMARK 200 RESOLUTION RANGE LOW (A) : 31.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.15500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.12700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2PTH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM SULFATE 0.1M SODIUM REMARK 280 CACODYLATE 30% PEG 8000, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.10150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.70750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.18600 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.70750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.10150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.18600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 N CA CB CG SD CE REMARK 470 LYS A 44 NZ REMARK 470 LEU A 54 CD1 REMARK 470 ALA A 55 CB REMARK 470 GLU A 57 CD OE1 OE2 REMARK 470 ASP A 58 OD2 REMARK 470 LYS A 73 NZ REMARK 470 ARG A 83 CZ NH1 NH2 REMARK 470 ASP A 97 OD2 REMARK 470 LYS A 118 NZ REMARK 470 LYS A 143 CD CE NZ REMARK 470 ASN A 144 ND2 REMARK 470 LYS A 153 CD CE NZ REMARK 470 ARG A 171 NH1 NH2 REMARK 470 GLU A 174 CD OE1 OE2 REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 ASP A 179 OD1 OD2 REMARK 470 LEU A 181 CD1 REMARK 470 LYS A 183 CD CE NZ REMARK 470 MET B 1 CE REMARK 470 THR B 2 CG2 REMARK 470 ASP B 33 OD1 OD2 REMARK 470 ARG B 34 NH1 NH2 REMARK 470 ARG B 36 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 40 CD NE CZ NH1 NH2 REMARK 470 GLU B 41 CD OE1 OE2 REMARK 470 LEU B 54 CD1 REMARK 470 LYS B 143 CE NZ REMARK 470 LYS B 145 CE NZ REMARK 470 VAL B 147 CG1 REMARK 470 LYS B 160 CE NZ REMARK 470 ARG B 171 CD NE CZ NH1 NH2 REMARK 470 LYS B 178 CG CD CE NZ REMARK 470 ASP B 179 CG OD1 OD2 REMARK 470 THR B 182 CG2 REMARK 470 LYS B 183 CE NZ REMARK 470 ASN B 186 ND2 REMARK 470 LYS B 192 CD CE NZ REMARK 470 GLN B 194 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE B 67 149.61 79.88 REMARK 500 ASP B 142 139.81 -39.48 REMARK 500 LYS B 143 -9.06 71.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PGE A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 712 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 713 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 714 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 715 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 716 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 717 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 718 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 719 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue BME B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: AF2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 310 DBREF1 7BRD A 1 194 UNP A0A2V3K250_KLEPN DBREF2 7BRD A A0A2V3K250 1 194 DBREF1 7BRD B 1 194 UNP A0A2V3K250_KLEPN DBREF2 7BRD B A0A2V3K250 1 194 SEQRES 1 A 194 MET THR ILE LYS LEU ILE VAL GLY LEU ALA ASN PRO GLY SEQRES 2 A 194 ALA GLU TYR ALA ALA THR ARG HIS ASN ALA GLY ALA TRP SEQRES 3 A 194 TYR VAL ASP LEU LEU ALA ASP ARG HIS ARG ALA PRO LEU SEQRES 4 A 194 ARG GLU GLU SER LYS PHE PHE GLY TYR THR SER ARG ILE SEQRES 5 A 194 ASN LEU ALA GLY GLU ASP VAL ARG LEU LEU VAL PRO THR SEQRES 6 A 194 THR PHE MET ASN LEU SER GLY LYS ALA VAL ALA ALA MET SEQRES 7 A 194 ALA THR PHE TYR ARG ILE ASN PRO ASP GLU ILE LEU VAL SEQRES 8 A 194 ALA HIS ASP GLU LEU ASP LEU PRO PRO GLY VAL ALA LYS SEQRES 9 A 194 PHE LYS LEU GLY GLY GLY HIS GLY GLY HIS ASN GLY LEU SEQRES 10 A 194 LYS ASP ILE ILE SER LYS LEU GLY ASN ASN PRO ASN PHE SEQRES 11 A 194 HIS ARG LEU ARG VAL GLY ILE GLY HIS PRO GLY ASP LYS SEQRES 12 A 194 ASN LYS VAL VAL GLY PHE VAL LEU GLY LYS PRO PRO ALA SEQRES 13 A 194 SER GLU GLN LYS LEU ILE ASP ASP ALA VAL ASP GLU ALA SEQRES 14 A 194 ALA ARG CYS THR GLU ILE LEU LEU LYS ASP GLY LEU THR SEQRES 15 A 194 LYS ALA THR ASN ARG LEU HIS ALA PHE LYS ALA GLN SEQRES 1 B 194 MET THR ILE LYS LEU ILE VAL GLY LEU ALA ASN PRO GLY SEQRES 2 B 194 ALA GLU TYR ALA ALA THR ARG HIS ASN ALA GLY ALA TRP SEQRES 3 B 194 TYR VAL ASP LEU LEU ALA ASP ARG HIS ARG ALA PRO LEU SEQRES 4 B 194 ARG GLU GLU SER LYS PHE PHE GLY TYR THR SER ARG ILE SEQRES 5 B 194 ASN LEU ALA GLY GLU ASP VAL ARG LEU LEU VAL PRO THR SEQRES 6 B 194 THR PHE MET ASN LEU SER GLY LYS ALA VAL ALA ALA MET SEQRES 7 B 194 ALA THR PHE TYR ARG ILE ASN PRO ASP GLU ILE LEU VAL SEQRES 8 B 194 ALA HIS ASP GLU LEU ASP LEU PRO PRO GLY VAL ALA LYS SEQRES 9 B 194 PHE LYS LEU GLY GLY GLY HIS GLY GLY HIS ASN GLY LEU SEQRES 10 B 194 LYS ASP ILE ILE SER LYS LEU GLY ASN ASN PRO ASN PHE SEQRES 11 B 194 HIS ARG LEU ARG VAL GLY ILE GLY HIS PRO GLY ASP LYS SEQRES 12 B 194 ASN LYS VAL VAL GLY PHE VAL LEU GLY LYS PRO PRO ALA SEQRES 13 B 194 SER GLU GLN LYS LEU ILE ASP ASP ALA VAL ASP GLU ALA SEQRES 14 B 194 ALA ARG CYS THR GLU ILE LEU LEU LYS ASP GLY LEU THR SEQRES 15 B 194 LYS ALA THR ASN ARG LEU HIS ALA PHE LYS ALA GLN HET PGE A 701 10 HET PEG A 702 7 HET EDO A 703 4 HET EDO A 704 4 HET ACT A 705 4 HET ACT A 706 4 HET ACT A 707 4 HET ACT A 708 4 HET EDO A 709 4 HET EDO A 710 4 HET ACT A 711 4 HET ACT A 712 4 HET CL A 713 1 HET CL A 714 1 HET CL A 715 1 HET CL A 716 1 HET SO4 A 717 5 HET SO4 A 718 5 HET ACT A 719 4 HET PEG B 301 7 HET EDO B 302 4 HET EDO B 303 4 HET EDO B 304 4 HET BME B 305 4 HET EDO B 306 4 HET ACT B 307 4 HET ACT B 308 4 HET SO4 B 309 5 HET SO4 B 310 5 HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETNAM CL CHLORIDE ION HETNAM SO4 SULFATE ION HETNAM BME BETA-MERCAPTOETHANOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PGE C6 H14 O4 FORMUL 4 PEG 2(C4 H10 O3) FORMUL 5 EDO 8(C2 H6 O2) FORMUL 7 ACT 9(C2 H3 O2 1-) FORMUL 15 CL 4(CL 1-) FORMUL 19 SO4 4(O4 S 2-) FORMUL 26 BME C2 H6 O S FORMUL 32 HOH *298(H2 O) HELIX 1 AA1 GLY A 13 ALA A 18 1 6 HELIX 2 AA2 THR A 19 HIS A 21 5 3 HELIX 3 AA3 ASN A 22 HIS A 35 1 14 HELIX 4 AA4 SER A 43 PHE A 45 5 3 HELIX 5 AA5 PHE A 67 ASN A 69 5 3 HELIX 6 AA6 LEU A 70 TYR A 82 1 13 HELIX 7 AA7 ASN A 85 ASP A 87 5 3 HELIX 8 AA8 HIS A 114 LEU A 124 1 11 HELIX 9 AA9 ASP A 142 ASN A 144 5 3 HELIX 10 AB1 LYS A 145 LEU A 151 1 7 HELIX 11 AB2 PRO A 155 GLY A 180 1 26 HELIX 12 AB3 GLY A 180 HIS A 189 1 10 HELIX 13 AB4 THR B 19 HIS B 21 5 3 HELIX 14 AB5 ASN B 22 HIS B 35 1 14 HELIX 15 AB6 SER B 43 PHE B 45 5 3 HELIX 16 AB7 PHE B 67 ASN B 69 5 3 HELIX 17 AB8 LEU B 70 ARG B 83 1 14 HELIX 18 AB9 ASN B 85 ASP B 87 5 3 HELIX 19 AC1 HIS B 114 LEU B 124 1 11 HELIX 20 AC2 LYS B 145 LEU B 151 1 7 HELIX 21 AC3 PRO B 155 GLY B 180 1 26 HELIX 22 AC4 GLY B 180 HIS B 189 1 10 SHEET 1 AA1 7 ARG A 40 GLU A 42 0 SHEET 2 AA1 7 GLY A 47 LEU A 54 -1 O GLY A 47 N GLU A 42 SHEET 3 AA1 7 GLU A 57 PRO A 64 -1 O VAL A 59 N ILE A 52 SHEET 4 AA1 7 LEU A 5 GLY A 8 1 N GLY A 8 O LEU A 62 SHEET 5 AA1 7 ILE A 89 GLU A 95 1 O ALA A 92 N VAL A 7 SHEET 6 AA1 7 HIS A 131 GLY A 136 1 O VAL A 135 N HIS A 93 SHEET 7 AA1 7 ALA A 103 LEU A 107 -1 N LYS A 104 O ARG A 134 SHEET 1 AA2 7 ARG B 40 GLU B 42 0 SHEET 2 AA2 7 GLY B 47 LEU B 54 -1 O THR B 49 N ARG B 40 SHEET 3 AA2 7 GLU B 57 PRO B 64 -1 O VAL B 59 N ILE B 52 SHEET 4 AA2 7 LEU B 5 GLY B 8 1 N GLY B 8 O LEU B 62 SHEET 5 AA2 7 ILE B 89 GLU B 95 1 O ALA B 92 N VAL B 7 SHEET 6 AA2 7 HIS B 131 GLY B 136 1 O VAL B 135 N HIS B 93 SHEET 7 AA2 7 ALA B 103 LEU B 107 -1 N LYS B 104 O ARG B 134 SITE 1 AC1 4 LYS A 44 ARG A 51 ARG A 60 TYR A 82 SITE 1 AC2 3 ARG A 34 HIS A 35 LYS A 123 SITE 1 AC3 4 ARG A 51 ILE A 52 ASN A 126 HOH A 846 SITE 1 AC4 6 SER A 157 GLU A 158 ACT A 719 HOH A 806 SITE 2 AC4 6 HOH A 900 LYS B 73 SITE 1 AC5 4 GLU A 41 TYR A 48 HOH A 830 SER B 122 SITE 1 AC6 5 GLY A 13 ALA A 14 GLU A 15 HIS B 111 SITE 2 AC6 5 HOH B 456 SITE 1 AC7 3 LYS A 106 GLY A 109 GLY A 110 SITE 1 AC8 3 GLN A 159 ASP A 163 HOH A 929 SITE 1 AC9 2 LYS A 104 ARG A 134 SITE 1 AD1 3 ALA A 156 HOH A 884 HOH A 930 SITE 1 AD2 1 ARG A 20 SITE 1 AD3 1 ARG A 34 SITE 1 AD4 4 ASN A 11 ASN A 115 ALA B 156 HOH B 493 SITE 1 AD5 4 LYS A 145 GLY A 148 LYS B 153 HOH B 516 SITE 1 AD6 4 ILE A 137 PHE A 149 GLU A 158 HOH A 927 SITE 1 AD7 2 GLU A 95 HOH A 889 SITE 1 AD8 4 ARG A 187 HOH A 802 ARG B 171 ARG B 187 SITE 1 AD9 8 GLU A 41 GLU A 42 SER A 43 ACT A 719 SITE 2 AD9 8 HOH A 808 HOH A 827 HOH A 857 HOH A 884 SITE 1 AE1 2 EDO A 704 SO4 A 718 SITE 1 AE2 6 ASN A 129 HOH A 880 THR B 80 ARG B 83 SITE 2 AE2 6 HOH B 403 HOH B 429 SITE 1 AE3 4 GLY B 110 HIS B 111 GLY B 112 HOH B 409 SITE 1 AE4 2 LYS B 104 HIS B 189 SITE 1 AE5 3 GLU B 41 SER B 43 LYS B 44 SITE 1 AE6 4 LYS B 106 GLY B 109 GLY B 110 HOH B 520 SITE 1 AE7 5 LEU B 96 LEU B 98 PRO B 99 GLY B 138 SITE 2 AE7 5 HIS B 139 SITE 1 AE8 2 LYS B 104 ARG B 134 SITE 1 AE9 1 ASP B 29 SITE 1 AF1 4 ALA B 17 ALA B 18 ASN B 22 TRP B 26 SITE 1 AF2 5 GLN A 194 LYS B 145 VAL B 146 VAL B 147 SITE 2 AF2 5 HOH B 489 CRYST1 70.203 72.372 77.415 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014244 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012917 0.00000