HEADER MEMBRANE PROTEIN 29-MAR-20 7BRN TITLE CRYSTAL STRUCTURE OF ATG40 AIM FUSED TO ATG8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: AUTOPHAGY-RELATED PROTEIN 40,AUTOPHAGY-RELATED PROTEIN 8; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: S288C; SOURCE 6 GENE: ATG40, YOR152C, O3536, ATG8, APG8, AUT7, CVT5, YBL078C, SOURCE 7 YBL0732; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS AUTOPHAGY, ENDOPLASMIC RETICULUM, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.YAMASAKI,N.N.NODA REVDAT 3 29-NOV-23 7BRN 1 REMARK REVDAT 2 22-JUL-20 7BRN 1 JRNL REVDAT 1 08-JUL-20 7BRN 0 JRNL AUTH K.MOCHIDA,A.YAMASAKI,K.MATOBA,H.KIRISAKO,N.N.NODA, JRNL AUTH 2 H.NAKATOGAWA JRNL TITL SUPER-ASSEMBLY OF ER-PHAGY RECEPTOR ATG40 INDUCES LOCAL ER JRNL TITL 2 REMODELING AT CONTACTS WITH FORMING AUTOPHAGOSOMAL JRNL TITL 3 MEMBRANES. JRNL REF NAT COMMUN V. 11 3306 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32620754 JRNL DOI 10.1038/S41467-020-17163-Y REMARK 2 REMARK 2 RESOLUTION. 2.23 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.23 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 9229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 462 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.8130 - 3.2180 1.00 3011 159 0.1826 0.1932 REMARK 3 2 3.2180 - 2.5543 1.00 2900 153 0.2206 0.2357 REMARK 3 3 2.5543 - 2.2314 0.99 2856 150 0.2632 0.3159 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.340 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.090 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 36.55 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 11 ) REMARK 3 ORIGIN FOR THE GROUP (A): -34.1568 -22.8734 11.8344 REMARK 3 T TENSOR REMARK 3 T11: 0.3598 T22: 0.4093 REMARK 3 T33: 0.2261 T12: -0.0188 REMARK 3 T13: 0.0335 T23: 0.0218 REMARK 3 L TENSOR REMARK 3 L11: 9.6462 L22: 3.5438 REMARK 3 L33: 6.5015 L12: 0.1158 REMARK 3 L13: 1.8220 L23: -1.3689 REMARK 3 S TENSOR REMARK 3 S11: 0.0826 S12: -0.6527 S13: -0.0585 REMARK 3 S21: -0.2423 S22: 0.3002 S23: -0.0095 REMARK 3 S31: -0.3042 S32: 0.1137 S33: -0.3857 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 12 THROUGH 19 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0548 -28.6366 11.9045 REMARK 3 T TENSOR REMARK 3 T11: 0.6193 T22: 0.8231 REMARK 3 T33: 0.6539 T12: 0.0398 REMARK 3 T13: -0.0087 T23: 0.1116 REMARK 3 L TENSOR REMARK 3 L11: 7.1167 L22: 8.6309 REMARK 3 L33: 3.0325 L12: 0.6651 REMARK 3 L13: -1.8558 L23: 4.5169 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: -0.2936 S13: 0.2905 REMARK 3 S21: -0.9809 S22: -0.5014 S23: -0.8139 REMARK 3 S31: -0.5991 S32: 1.6243 S33: 0.3964 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 20 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.6427 -22.4084 -11.5748 REMARK 3 T TENSOR REMARK 3 T11: 0.3138 T22: 0.3971 REMARK 3 T33: 0.2467 T12: 0.0353 REMARK 3 T13: 0.0284 T23: -0.0639 REMARK 3 L TENSOR REMARK 3 L11: 5.5404 L22: 4.0763 REMARK 3 L33: 5.3879 L12: -2.7831 REMARK 3 L13: 4.3997 L23: -3.8919 REMARK 3 S TENSOR REMARK 3 S11: -0.0702 S12: 0.5130 S13: -0.0875 REMARK 3 S21: -0.0487 S22: -0.1527 S23: -0.2357 REMARK 3 S31: 0.0983 S32: 0.6999 S33: 0.1828 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 53 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.8847 -12.3824 -8.1708 REMARK 3 T TENSOR REMARK 3 T11: 0.4149 T22: 0.3058 REMARK 3 T33: 0.2554 T12: -0.0557 REMARK 3 T13: -0.0271 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 4.4761 L22: 3.7789 REMARK 3 L33: 4.9172 L12: -0.3832 REMARK 3 L13: 4.4118 L23: 1.1062 REMARK 3 S TENSOR REMARK 3 S11: -0.6237 S12: 0.1317 S13: 0.3328 REMARK 3 S21: 0.1489 S22: 0.0136 S23: -0.1636 REMARK 3 S31: -0.9047 S32: 0.2856 S33: 0.6233 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 54 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.0313 -13.0405 0.6664 REMARK 3 T TENSOR REMARK 3 T11: 0.3924 T22: 0.3395 REMARK 3 T33: 0.2537 T12: -0.0624 REMARK 3 T13: -0.0140 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 4.1872 L22: 5.7738 REMARK 3 L33: 1.1673 L12: -0.4253 REMARK 3 L13: -1.0534 L23: 2.1600 REMARK 3 S TENSOR REMARK 3 S11: -0.1511 S12: -0.3020 S13: 0.0020 REMARK 3 S21: 0.0190 S22: 0.0860 S23: -0.3108 REMARK 3 S31: -0.3957 S32: 0.1239 S33: 0.1326 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 108 ) REMARK 3 ORIGIN FOR THE GROUP (A): -26.6397 -5.5938 4.0189 REMARK 3 T TENSOR REMARK 3 T11: 0.7671 T22: 0.3258 REMARK 3 T33: 0.3673 T12: -0.1039 REMARK 3 T13: -0.0714 T23: -0.0270 REMARK 3 L TENSOR REMARK 3 L11: 3.8868 L22: 3.4449 REMARK 3 L33: 6.2145 L12: 0.6400 REMARK 3 L13: -0.7445 L23: -1.8197 REMARK 3 S TENSOR REMARK 3 S11: 0.1121 S12: -0.3047 S13: 0.4001 REMARK 3 S21: 0.7312 S22: -0.1391 S23: -0.0450 REMARK 3 S31: -0.7613 S32: 0.5929 S33: 0.0369 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 109 THROUGH 122 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.2898 -9.9994 -11.7507 REMARK 3 T TENSOR REMARK 3 T11: 0.4554 T22: 0.5717 REMARK 3 T33: 0.3183 T12: -0.1346 REMARK 3 T13: 0.0560 T23: 0.0315 REMARK 3 L TENSOR REMARK 3 L11: 6.6772 L22: 2.6021 REMARK 3 L33: 4.0143 L12: 0.5321 REMARK 3 L13: 2.4052 L23: 2.9176 REMARK 3 S TENSOR REMARK 3 S11: -0.0009 S12: 0.0382 S13: 0.3801 REMARK 3 S21: -0.2948 S22: -0.1961 S23: -0.3417 REMARK 3 S31: -0.8073 S32: 0.9494 S33: 0.1269 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 123 THROUGH 133 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.4996 -12.7042 5.5804 REMARK 3 T TENSOR REMARK 3 T11: 0.7202 T22: 0.7084 REMARK 3 T33: 0.3002 T12: -0.1374 REMARK 3 T13: -0.1501 T23: -0.0532 REMARK 3 L TENSOR REMARK 3 L11: 3.8036 L22: 2.4912 REMARK 3 L33: 0.5474 L12: -1.7735 REMARK 3 L13: 1.3261 L23: -0.5149 REMARK 3 S TENSOR REMARK 3 S11: 0.1206 S12: -1.1834 S13: 0.1006 REMARK 3 S21: 0.9967 S22: -0.0348 S23: -0.4959 REMARK 3 S31: -0.6089 S32: 0.9943 S33: -0.2133 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BRN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016362. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-17 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 4M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9229 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.231 REMARK 200 RESOLUTION RANGE LOW (A) : 42.813 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 13.7800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.23 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.59540 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.440 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.13_2998 REMARK 200 STARTING MODEL: 2ZPN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 0.1M HEPES PH 7.5, 8% REMARK 280 ETHYLENE GLYCOL, 0.04% CORTISONE, 0.04% EPINEPHRINE, 0.04% REMARK 280 PROTOPORPHYRIN DISODIUM SALT, 0.04% PYRIDOXINE, 0.04% THYMIDINE REMARK 280 MONOPHOSPHATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.06133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.03067 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.03067 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 38.06133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 134 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 15 CG CD1 CD2 REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 LYS A 119 CG CD CE NZ REMARK 470 PHE A 133 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 63 -72.18 -72.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ALE A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 203 DBREF 7BRN A 3 18 UNP Q99325 ATG40_YEAST 237 252 DBREF 7BRN A 19 134 UNP P38182 ATG8_YEAST 1 116 SEQADV 7BRN GLY A 1 UNP Q99325 EXPRESSION TAG SEQADV 7BRN PRO A 2 UNP Q99325 EXPRESSION TAG SEQADV 7BRN PRO A 44 UNP P38182 LYS 26 ENGINEERED MUTATION SEQRES 1 A 134 GLY PRO GLU PHE PRO ASN ASP TYR ASP PHE MET GLU ASP SEQRES 2 A 134 ILE LEU ASP GLU THR MET LYS SER THR PHE LYS SER GLU SEQRES 3 A 134 TYR PRO PHE GLU LYS ARG LYS ALA GLU SER GLU ARG ILE SEQRES 4 A 134 ALA ASP ARG PHE PRO ASN ARG ILE PRO VAL ILE CYS GLU SEQRES 5 A 134 LYS ALA GLU LYS SER ASP ILE PRO GLU ILE ASP LYS ARG SEQRES 6 A 134 LYS TYR LEU VAL PRO ALA ASP LEU THR VAL GLY GLN PHE SEQRES 7 A 134 VAL TYR VAL ILE ARG LYS ARG ILE MET LEU PRO PRO GLU SEQRES 8 A 134 LYS ALA ILE PHE ILE PHE VAL ASN ASP THR LEU PRO PRO SEQRES 9 A 134 THR ALA ALA LEU MET SER ALA ILE TYR GLN GLU HIS LYS SEQRES 10 A 134 ASP LYS ASP GLY PHE LEU TYR VAL THR TYR SER GLY GLU SEQRES 11 A 134 ASN THR PHE GLY HET ALE A 201 26 HET EDO A 202 10 HET EDO A 203 10 HETNAM ALE L-EPINEPHRINE HETNAM EDO 1,2-ETHANEDIOL HETSYN ALE ADRENALINE HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ALE C9 H13 N O3 FORMUL 3 EDO 2(C2 H6 O2) FORMUL 5 HOH *42(H2 O) HELIX 1 AA1 MET A 11 LEU A 15 5 5 HELIX 2 AA2 ASP A 16 LYS A 20 5 5 HELIX 3 AA3 THR A 22 TYR A 27 1 6 HELIX 4 AA4 PRO A 28 PHE A 43 1 16 HELIX 5 AA5 THR A 74 ILE A 86 1 13 HELIX 6 AA6 LEU A 108 LYS A 117 1 10 SHEET 1 AA1 4 LYS A 66 PRO A 70 0 SHEET 2 AA1 4 ARG A 46 LYS A 53 -1 N ILE A 47 O VAL A 69 SHEET 3 AA1 4 LEU A 123 SER A 128 1 O VAL A 125 N ILE A 50 SHEET 4 AA1 4 PHE A 95 PHE A 97 -1 N PHE A 97 O THR A 126 CISPEP 1 PHE A 4 PRO A 5 0 1.85 SITE 1 AC1 10 PRO A 2 GLU A 3 ASP A 7 TYR A 27 SITE 2 AC1 10 ARG A 38 ASP A 41 ARG A 65 LYS A 66 SITE 3 AC1 10 EDO A 203 HOH A 337 SITE 1 AC2 4 ARG A 83 ALA A 93 ILE A 94 HOH A 318 SITE 1 AC3 4 PHE A 23 GLU A 35 LYS A 66 ALE A 201 CRYST1 74.729 74.729 57.092 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013382 0.007726 0.000000 0.00000 SCALE2 0.000000 0.015452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017516 0.00000