HEADER DNA 30-MAR-20 7BSH TITLE CRYSTAL STRUCTURE OF A NIR-EMITTING DNA-STABILIZED AG16 NANOCLUSTER TITLE 2 (ABASIC MUTANT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'-D(*CP*AP*CP*CP*(3DR)P*AP*GP*CP*GP*A)-3'); COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SF FILE CONTAINS FRIEDEL PAIRS. SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630 KEYWDS NANOCLUSTER, SILVER, DNA EXPDTA X-RAY DIFFRACTION AUTHOR J.KONDO,C.CERRETANI,T.VOSCH REVDAT 2 29-NOV-23 7BSH 1 JRNL REVDAT 1 16-DEC-20 7BSH 0 JRNL AUTH C.CERRETANI,J.KONDO,T.VOSCH JRNL TITL MUTATION OF POSITION 5 AS A CRYSTAL ENGINEERING TOOL FOR A JRNL TITL 2 NIR-EMITTING DNA-STABILIZED AG16 NANOCLUSTER. JRNL REF CRYSTENGCOMM V. 22 8136 2020 JRNL REFN ESSN 1466-8033 JRNL DOI 10.1039/D0CE01225D REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.17.1 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.71 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 26741 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.078 REMARK 3 R VALUE (WORKING SET) : 0.077 REMARK 3 FREE R VALUE : 0.088 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2682 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.7100 - 3.2000 0.99 1264 144 0.1157 0.1325 REMARK 3 2 3.2000 - 2.5400 1.00 1255 139 0.0864 0.1019 REMARK 3 3 2.5400 - 2.2200 1.00 1287 141 0.0590 0.0730 REMARK 3 4 2.2200 - 2.0200 1.00 1269 140 0.0590 0.0561 REMARK 3 5 2.0100 - 1.8700 1.00 1272 143 0.0652 0.0687 REMARK 3 6 1.8700 - 1.7600 1.00 1247 142 0.0627 0.0779 REMARK 3 7 1.7600 - 1.6700 1.00 1278 139 0.0694 0.0797 REMARK 3 8 1.6700 - 1.6000 1.00 1292 150 0.0671 0.1024 REMARK 3 9 1.6000 - 1.5400 0.99 1243 137 0.0671 0.0851 REMARK 3 10 1.5400 - 1.4800 1.00 1245 143 0.0603 0.0738 REMARK 3 11 1.4800 - 1.4400 1.00 1286 137 0.0692 0.0904 REMARK 3 12 1.4400 - 1.4000 1.00 1270 144 0.0693 0.1000 REMARK 3 13 1.4000 - 1.3600 1.00 1277 141 0.0748 0.0769 REMARK 3 14 1.3600 - 1.3300 1.00 1275 144 0.0711 0.0724 REMARK 3 15 1.3300 - 1.3000 1.00 1262 141 0.0774 0.0826 REMARK 3 16 1.3000 - 1.2700 1.00 1258 140 0.0841 0.0916 REMARK 3 17 1.2700 - 1.2400 1.00 1281 142 0.0911 0.0802 REMARK 3 18 1.2400 - 1.2200 1.00 1284 142 0.1070 0.1024 REMARK 3 19 1.2200 - 1.2000 0.98 1214 133 0.1195 0.1084 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.040 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 6.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.49 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BSH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016353. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-17A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26773 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 27.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.772 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.8400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.48 REMARK 200 R MERGE FOR SHELL (I) : 0.29200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.190 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6JR4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MOPS, SPERMINE, CALCIUM NITRATE, MPD, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 14.11150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 21.74100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.98000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 21.74100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 14.11150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 17.98000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 2200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -128.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC A 4 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DG A 7 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DG B 7 O4' - C1' - N9 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 1 O2 REMARK 620 2 DC A 3 N3 90.0 REMARK 620 3 DA B 2 N1 88.1 109.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 105 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 1 N3 REMARK 620 2 DC B 3 O2 83.2 REMARK 620 3 DC B 4 O2 98.9 80.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 102 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 4 N3 REMARK 620 2 DG A 9 O6 89.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 110 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 4 O2 REMARK 620 2 DC B 1 N3 98.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 111 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC A 4 O2 REMARK 620 2 DG B 9 N1 85.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 104 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 6 OP1 REMARK 620 2 DG A 7 N7 90.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 108 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 6 N7 REMARK 620 2 DG A 7 O6 91.4 REMARK 620 3 DA B 6 OP2 91.7 94.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 112 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA A 6 OP2 REMARK 620 2 DA B 6 N7 93.6 REMARK 620 3 DG B 7 O6 90.6 89.0 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 107 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 7 O6 REMARK 620 2 DC A 8 O2 79.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG A 106 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 9 N1 REMARK 620 2 DC B 4 O2 85.6 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 101 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC B 1 O2 REMARK 620 2 DC B 3 N3 94.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 102 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DC B 4 N3 REMARK 620 2 DG B 9 O6 89.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 AG B 104 AG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DA B 6 OP1 REMARK 620 2 DG B 7 N7 91.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 107 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 108 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 109 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 110 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 111 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG A 112 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG B 103 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG B 104 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG B 105 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AG B 106 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DC B 4 and 3DR B REMARK 800 5 REMARK 800 REMARK 800 SITE_IDENTIFIER: AE2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide 3DR B 5 and DA B REMARK 800 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6JR4 RELATED DB: PDB REMARK 900 ORIGINAL SEQUENCE DBREF 7BSH A 1 10 PDB 7BSH 7BSH 1 10 DBREF 7BSH B 1 10 PDB 7BSH 7BSH 1 10 SEQRES 1 A 10 DC DA DC DC 3DR DA DG DC DG DA SEQRES 1 B 10 DC DA DC DC 3DR DA DG DC DG DA HET 3DR A 5 19 HET 3DR B 5 19 HET AG A 101 1 HET AG A 102 1 HET AG A 103 1 HET AG A 104 1 HET AG A 105 1 HET AG A 106 1 HET AG A 107 1 HET AG A 108 1 HET AG A 109 1 HET AG A 110 1 HET AG A 111 1 HET AG A 112 1 HET AG B 101 1 HET AG B 102 1 HET AG B 103 1 HET AG B 104 1 HET AG B 105 1 HET AG B 106 1 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM AG SILVER ION HETSYN 3DR ABASIC DIDEOXYRIBOSE FORMUL 1 3DR 2(C5 H11 O6 P) FORMUL 3 AG 18(AG 1+) FORMUL 21 HOH *33(H2 O) LINK O3' DC A 4 P 3DR A 5 1555 1555 1.61 LINK O3' 3DR A 5 P DA A 6 1555 1555 1.60 LINK O3' DC B 4 P 3DR B 5 1555 1555 1.61 LINK O3' 3DR B 5 P DA B 6 1555 1555 1.61 LINK O2 DC A 1 AG AG A 101 1555 1555 2.44 LINK N3 DC A 1 AG AG A 105 1555 1555 2.29 LINK N3 DC A 3 AG AG A 101 1555 1555 2.29 LINK N3 DC A 4 AG AG A 102 1555 1555 2.42 LINK O2 DC A 4 AG AG A 110 1555 1555 2.48 LINK O2 DC A 4 AG AG A 111 1555 1555 2.67 LINK OP1 DA A 6 AG AG A 104 1555 1555 2.35 LINK N7 DA A 6 AG AG A 108 1555 1555 2.25 LINK OP2 DA A 6 AG AG A 112 1555 1555 2.32 LINK N7 DG A 7 AG AG A 104 1555 1555 2.32 LINK O6 DG A 7 AG AG A 107 1555 1555 2.60 LINK O6 DG A 7 AG AG A 108 1555 1555 2.45 LINK N3 DC A 8 AG AG A 103 1555 1555 2.22 LINK O2 DC A 8 AG AG A 107 1555 1555 2.67 LINK O6 DG A 9 AG AG A 102 1555 1555 2.31 LINK N1 DG A 9 AG AG A 106 1555 1555 2.26 LINK AG AG A 101 N1 DA B 2 1555 1555 2.45 LINK AG AG A 105 O2 DC B 3 1555 1555 2.66 LINK AG AG A 105 O2 DC B 4 1555 1555 2.53 LINK AG AG A 106 O2 DC B 4 1555 1555 2.59 LINK AG AG A 108 OP2 DA B 6 1555 1555 2.34 LINK AG AG A 110 N3 DC B 1 1555 1555 2.27 LINK AG AG A 111 N1 DG B 9 1555 1555 2.25 LINK AG AG A 112 N7 DA B 6 1555 1555 2.27 LINK AG AG A 112 O6 DG B 7 1555 1555 2.40 LINK O2 DC B 1 AG AG B 101 1555 1555 2.37 LINK N3 DC B 3 AG AG B 101 1555 1555 2.23 LINK N3 DC B 4 AG AG B 102 1555 1555 2.36 LINK OP1 DA B 6 AG AG B 104 1555 1555 2.35 LINK N7 DG B 7 AG AG B 104 1555 1555 2.34 LINK N3 DC B 8 AG AG B 103 1555 1555 2.21 LINK O2 DC B 8 AG AG B 105 1555 1555 2.58 LINK O6 DG B 9 AG AG B 102 1555 1555 2.41 SITE 1 AC1 7 DC A 1 DC A 3 AG A 102 AG A 105 SITE 2 AC1 7 AG A 110 DA B 2 AG B 101 SITE 1 AC2 9 DC A 4 DG A 9 AG A 101 AG A 103 SITE 2 AC2 9 AG A 105 AG A 106 AG A 110 AG A 111 SITE 3 AC2 9 AG B 102 SITE 1 AC3 10 DC A 4 DC A 8 AG A 102 AG A 104 SITE 2 AC3 10 AG A 106 AG A 107 AG A 109 AG A 111 SITE 3 AC3 10 AG B 103 AG B 105 SITE 1 AC4 9 DA A 6 DG A 7 DC A 8 AG A 103 SITE 2 AC4 9 AG A 107 AG A 108 AG A 112 AG B 104 SITE 3 AC4 9 AG B 105 SITE 1 AC5 9 DC A 1 DG A 9 AG A 101 AG A 102 SITE 2 AC5 9 AG A 106 DC B 3 DC B 4 AG B 101 SITE 3 AC5 9 AG B 102 SITE 1 AC6 10 DC A 8 DG A 9 AG A 102 AG A 103 SITE 2 AC6 10 AG A 105 AG A 107 DC B 4 AG B 102 SITE 3 AC6 10 AG B 103 AG B 106 SITE 1 AC7 10 DG A 7 DC A 8 AG A 103 AG A 104 SITE 2 AC7 10 AG A 106 AG A 108 AG B 103 AG B 104 SITE 3 AC7 10 AG B 105 AG B 106 SITE 1 AC8 7 DA A 6 DG A 7 AG A 104 AG A 107 SITE 2 AC8 7 AG A 112 DA B 6 AG B 104 SITE 1 AC9 8 DC A 4 3DR A 5 DA A 6 DC A 8 SITE 2 AC9 8 AG A 103 AG A 111 DG B 9 AG B 105 SITE 1 AD1 9 DC A 3 DC A 4 AG A 101 AG A 102 SITE 2 AD1 9 AG A 111 DC B 1 DG B 9 AG B 101 SITE 3 AD1 9 AG B 102 SITE 1 AD2 10 DC A 4 AG A 102 AG A 103 AG A 109 SITE 2 AD2 10 AG A 110 DC B 8 DG B 9 AG B 102 SITE 3 AD2 10 AG B 103 AG B 105 SITE 1 AD3 7 DA A 6 AG A 104 AG A 108 DA B 6 SITE 2 AD3 7 DG B 7 AG B 104 AG B 105 SITE 1 AD4 9 AG A 101 AG A 105 AG A 110 DC B 1 SITE 2 AD4 9 DA B 2 DC B 3 DC B 4 DG B 9 SITE 3 AD4 9 AG B 102 SITE 1 AD5 9 AG A 102 AG A 105 AG A 106 AG A 110 SITE 2 AD5 9 AG A 111 DC B 4 DG B 9 AG B 101 SITE 3 AD5 9 AG B 103 SITE 1 AD6 10 AG A 103 AG A 106 AG A 107 AG A 111 SITE 2 AD6 10 DC B 4 DC B 8 AG B 102 AG B 104 SITE 3 AD6 10 AG B 105 AG B 106 SITE 1 AD7 9 AG A 104 AG A 107 AG A 108 AG A 112 SITE 2 AD7 9 DA B 6 DG B 7 DC B 8 AG B 103 SITE 3 AD7 9 AG B 105 SITE 1 AD8 10 AG A 103 AG A 104 AG A 107 AG A 109 SITE 2 AD8 10 AG A 111 AG A 112 DG B 7 DC B 8 SITE 3 AD8 10 AG B 103 AG B 104 SITE 1 AD9 8 DG A 9 AG A 106 AG A 107 DC B 4 SITE 2 AD9 8 3DR B 5 DA B 6 DC B 8 AG B 103 SITE 1 AE1 16 DC A 1 DA A 6 DG A 9 AG A 105 SITE 2 AE1 16 AG A 106 DC B 3 DA B 6 DC B 8 SITE 3 AE1 16 DG B 9 AG B 101 AG B 102 AG B 103 SITE 4 AE1 16 AG B 106 HOH B 207 HOH B 212 HOH B 214 SITE 1 AE2 14 DA A 6 DG A 7 DA A 10 AG A 108 SITE 2 AE2 14 AG A 112 DC B 4 DG B 7 DC B 8 SITE 3 AE2 14 AG B 104 AG B 106 HOH B 205 HOH B 207 SITE 4 AE2 14 HOH B 209 HOH B 211 CRYST1 28.223 35.960 43.482 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.035432 0.000000 0.000000 0.00000 SCALE2 0.000000 0.027809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022998 0.00000