HEADER SUGAR BINDING PROTEIN 31-MAR-20 7BT8 TITLE MEVO LECTIN COMPLEX WITH MANNOTRIOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: LECTIN; COMPND 3 CHAIN: B, G, A, D, E, F, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCOCCUS VOLTAE (STRAIN ATCC BAA-1334 / SOURCE 3 A3); SOURCE 4 ORGANISM_TAXID: 456320; SOURCE 5 STRAIN: ATCC BAA-1334 / A3; SOURCE 6 GENE: MVOL_0737; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BETA-PRISM I FOLD LECTIN, ARCHEAL LECTIN, HEPTAMER, RING SHAPE KEYWDS 2 STRUCTURE, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR N.SIVAJI,K.SUGUNA,A.SUROLIA,M.VIJAYAN REVDAT 3 29-NOV-23 7BT8 1 REMARK REVDAT 2 21-APR-21 7BT8 1 JRNL REVDAT 1 03-FEB-21 7BT8 0 JRNL AUTH N.SIVAJI,K.SUGUNA,A.SUROLIA,M.VIJAYAN JRNL TITL STRUCTURAL AND RELATED STUDIES ON MEVO LECTIN FROM JRNL TITL 2 METHANOCOCCUS VOLTAE A3: THE FIRST THOROUGH CHARACTERIZATION JRNL TITL 3 OF AN ARCHEAL LECTIN AND ITS INTERACTIONS. JRNL REF GLYCOBIOLOGY V. 31 315 2021 JRNL REFN ESSN 1460-2423 JRNL PMID 32651948 JRNL DOI 10.1093/GLYCOB/CWAA063 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 39930 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.086 REMARK 3 FREE R VALUE TEST SET COUNT : 2027 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2827 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3240 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7220 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 162 REMARK 3 SOLVENT ATOMS : 61 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.97 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.15600 REMARK 3 B22 (A**2) : -0.53200 REMARK 3 B33 (A**2) : -2.62400 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.557 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.286 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7505 ; 0.010 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6867 ; 0.037 ; 0.018 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 10131 ; 1.663 ; 1.659 REMARK 3 BOND ANGLES OTHERS (DEGREES): 15947 ; 2.427 ; 1.606 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 956 ; 8.437 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 299 ;34.264 ;24.482 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1212 ;14.628 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;14.943 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1073 ; 0.064 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8276 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1484 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1017 ; 0.178 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 42 ; 0.271 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3537 ; 0.168 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 185 ; 0.133 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3854 ; 3.425 ; 3.999 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3853 ; 3.426 ; 3.998 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4800 ; 5.351 ; 5.987 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4801 ; 5.351 ; 5.987 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3651 ; 3.923 ; 4.371 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3652 ; 3.922 ; 4.371 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 5331 ; 5.882 ; 6.399 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 5332 ; 5.882 ; 6.400 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THEIR REMARK 3 RIDING POSITIONS REMARK 4 REMARK 4 7BT8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016422. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU ULTRAX 18 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39930 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 54.390 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.19000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 7BSB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 6%(V/V) TACSIMATE PH 6.0, 0.1 M MES REMARK 280 MONOHYDRATE PH 6.0, 25%(W/V) POLYETHYLENE GLYCOL 4000, REMARK 280 MICROBATCH, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 X,-Y,-Z REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 -X,-Y+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 78.61000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 81.59000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 78.61000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 81.59000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEPTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, G, A, D, E, F, C, H, I, J REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP G 5 REMARK 465 ASN G 6 REMARK 465 GLN G 25 REMARK 465 GLU G 26 REMARK 465 SER G 27 REMARK 465 GLY G 28 REMARK 465 GLU A 26 REMARK 465 SER A 27 REMARK 465 GLY A 28 REMARK 465 ASP E 5 REMARK 465 GLU E 26 REMARK 465 SER E 27 REMARK 465 GLY E 28 REMARK 465 ASP F 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU B 26 CG CD OE1 OE2 REMARK 470 SER B 27 OG REMARK 470 LYS B 98 CG CD CE NZ REMARK 470 TYR G 7 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 TYR G 9 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 MET G 24 CG SD CE REMARK 470 GLN G 40 CG CD OE1 NE2 REMARK 470 LYS G 50 CG CD CE NZ REMARK 470 ILE G 52 CG1 CG2 CD1 REMARK 470 ASN G 53 CG OD1 ND2 REMARK 470 ASN G 56 CG OD1 ND2 REMARK 470 LYS G 64 CG CD CE NZ REMARK 470 ASP G 75 CG OD1 OD2 REMARK 470 ASN G 90 CG OD1 ND2 REMARK 470 LYS G 98 CG CD CE NZ REMARK 470 LYS G 128 CG CD CE NZ REMARK 470 ARG G 137 CG CD NE CZ NH1 NH2 REMARK 470 LYS G 144 CG CD CE NZ REMARK 470 ASP A 5 CG OD1 OD2 REMARK 470 LYS A 50 CG CD CE NZ REMARK 470 ILE A 52 CG1 CG2 CD1 REMARK 470 ASP D 5 CG OD1 OD2 REMARK 470 GLN D 25 CG CD OE1 NE2 REMARK 470 GLU D 26 CG CD OE1 OE2 REMARK 470 SER D 27 OG REMARK 470 SER D 38 OG REMARK 470 LEU D 43 CG CD1 CD2 REMARK 470 LYS D 50 CG CD CE NZ REMARK 470 ILE D 52 CG1 CG2 CD1 REMARK 470 ASN D 56 CG OD1 ND2 REMARK 470 LYS D 88 CG CD CE NZ REMARK 470 LYS D 98 CG CD CE NZ REMARK 470 GLU D 114 CG CD OE1 OE2 REMARK 470 LYS E 50 CG CD CE NZ REMARK 470 LYS E 64 CG CD CE NZ REMARK 470 ASN F 6 CG OD1 ND2 REMARK 470 GLU F 26 CG CD OE1 OE2 REMARK 470 SER F 27 OG REMARK 470 ILE F 52 CG1 CG2 CD1 REMARK 470 LYS F 128 CG CD CE NZ REMARK 470 ASP C 5 CG OD1 OD2 REMARK 470 GLU C 26 CG CD OE1 OE2 REMARK 470 SER C 27 OG REMARK 470 LYS C 50 CG CD CE NZ REMARK 470 LYS C 64 CG CD CE NZ REMARK 470 LYS C 128 CG CD CE NZ REMARK 470 ARG C 137 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 144 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O3 BMA H 1 O5 MAN H 2 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 137 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 6 33.02 -99.38 REMARK 500 SER B 27 51.86 -150.33 REMARK 500 GLU B 114 -77.75 -133.05 REMARK 500 LYS B 128 130.91 -170.23 REMARK 500 PRO G 63 60.12 -68.65 REMARK 500 ASP G 91 35.19 -90.59 REMARK 500 GLU G 114 -77.67 -134.35 REMARK 500 TYR G 120 152.71 -47.13 REMARK 500 ASN A 54 117.62 -163.17 REMARK 500 ASP A 91 31.19 -94.97 REMARK 500 GLU A 114 -82.88 -122.50 REMARK 500 TYR A 120 152.94 -48.43 REMARK 500 ASN D 6 40.07 -97.87 REMARK 500 ASN D 54 122.11 -172.80 REMARK 500 GLU D 114 -89.10 -125.76 REMARK 500 TYR D 120 154.20 -48.39 REMARK 500 ASN E 54 124.39 -170.46 REMARK 500 GLU E 114 -74.58 -124.01 REMARK 500 PRO F 20 160.12 -49.46 REMARK 500 GLU F 114 -84.00 -117.58 REMARK 500 TYR F 120 155.40 -48.19 REMARK 500 ASN C 6 35.71 -98.65 REMARK 500 GLU C 114 -78.49 -133.57 REMARK 500 REMARK 500 REMARK: NULL DBREF 7BT8 B 5 144 UNP D7DTD6 D7DTD6_METV3 5 144 DBREF 7BT8 G 5 144 UNP D7DTD6 D7DTD6_METV3 5 144 DBREF 7BT8 A 5 144 UNP D7DTD6 D7DTD6_METV3 5 144 DBREF 7BT8 D 5 144 UNP D7DTD6 D7DTD6_METV3 5 144 DBREF 7BT8 E 5 144 UNP D7DTD6 D7DTD6_METV3 5 144 DBREF 7BT8 F 5 144 UNP D7DTD6 D7DTD6_METV3 5 144 DBREF 7BT8 C 5 144 UNP D7DTD6 D7DTD6_METV3 5 144 SEQRES 1 B 140 ASP ASN TYR ILE TYR SER THR GLU VAL GLY GLY VAL GLY SEQRES 2 B 140 GLY THR PRO PHE THR PHE MET GLN GLU SER GLY THR ILE SEQRES 3 B 140 THR SER ILE LYS PHE ASN TRP SER ASP GLN TYR LYS LEU SEQRES 4 B 140 LEU HIS HIS ILE GLU VAL LYS PHE ILE ASN ASN ALA ASN SEQRES 5 B 140 ILE TYR ALA THR GLY ASP PRO LYS GLY ASN HIS GLU VAL SEQRES 6 B 140 ILE LEU GLU ILE ASP ASP ASP GLU THR ILE ILE GLY SER SEQRES 7 B 140 VAL ILE GLY TYR LYS LYS GLY ASN ASP GLY ARG CYS THR SEQRES 8 B 140 GLY VAL LYS LEU THR THR SER LYS GLY LYS SER ILE MET SEQRES 9 B 140 ALA GLY TYR PHE GLU GLU SER LEU ILE THR THR TYR THR SEQRES 10 B 140 GLY LYS LEU ALA GLY ILE LYS GLY GLY ALA GLY SER ASP SEQRES 11 B 140 ILE ASP ARG LEU GLY LEU ILE PHE LEU LYS SEQRES 1 G 140 ASP ASN TYR ILE TYR SER THR GLU VAL GLY GLY VAL GLY SEQRES 2 G 140 GLY THR PRO PHE THR PHE MET GLN GLU SER GLY THR ILE SEQRES 3 G 140 THR SER ILE LYS PHE ASN TRP SER ASP GLN TYR LYS LEU SEQRES 4 G 140 LEU HIS HIS ILE GLU VAL LYS PHE ILE ASN ASN ALA ASN SEQRES 5 G 140 ILE TYR ALA THR GLY ASP PRO LYS GLY ASN HIS GLU VAL SEQRES 6 G 140 ILE LEU GLU ILE ASP ASP ASP GLU THR ILE ILE GLY SER SEQRES 7 G 140 VAL ILE GLY TYR LYS LYS GLY ASN ASP GLY ARG CYS THR SEQRES 8 G 140 GLY VAL LYS LEU THR THR SER LYS GLY LYS SER ILE MET SEQRES 9 G 140 ALA GLY TYR PHE GLU GLU SER LEU ILE THR THR TYR THR SEQRES 10 G 140 GLY LYS LEU ALA GLY ILE LYS GLY GLY ALA GLY SER ASP SEQRES 11 G 140 ILE ASP ARG LEU GLY LEU ILE PHE LEU LYS SEQRES 1 A 140 ASP ASN TYR ILE TYR SER THR GLU VAL GLY GLY VAL GLY SEQRES 2 A 140 GLY THR PRO PHE THR PHE MET GLN GLU SER GLY THR ILE SEQRES 3 A 140 THR SER ILE LYS PHE ASN TRP SER ASP GLN TYR LYS LEU SEQRES 4 A 140 LEU HIS HIS ILE GLU VAL LYS PHE ILE ASN ASN ALA ASN SEQRES 5 A 140 ILE TYR ALA THR GLY ASP PRO LYS GLY ASN HIS GLU VAL SEQRES 6 A 140 ILE LEU GLU ILE ASP ASP ASP GLU THR ILE ILE GLY SER SEQRES 7 A 140 VAL ILE GLY TYR LYS LYS GLY ASN ASP GLY ARG CYS THR SEQRES 8 A 140 GLY VAL LYS LEU THR THR SER LYS GLY LYS SER ILE MET SEQRES 9 A 140 ALA GLY TYR PHE GLU GLU SER LEU ILE THR THR TYR THR SEQRES 10 A 140 GLY LYS LEU ALA GLY ILE LYS GLY GLY ALA GLY SER ASP SEQRES 11 A 140 ILE ASP ARG LEU GLY LEU ILE PHE LEU LYS SEQRES 1 D 140 ASP ASN TYR ILE TYR SER THR GLU VAL GLY GLY VAL GLY SEQRES 2 D 140 GLY THR PRO PHE THR PHE MET GLN GLU SER GLY THR ILE SEQRES 3 D 140 THR SER ILE LYS PHE ASN TRP SER ASP GLN TYR LYS LEU SEQRES 4 D 140 LEU HIS HIS ILE GLU VAL LYS PHE ILE ASN ASN ALA ASN SEQRES 5 D 140 ILE TYR ALA THR GLY ASP PRO LYS GLY ASN HIS GLU VAL SEQRES 6 D 140 ILE LEU GLU ILE ASP ASP ASP GLU THR ILE ILE GLY SER SEQRES 7 D 140 VAL ILE GLY TYR LYS LYS GLY ASN ASP GLY ARG CYS THR SEQRES 8 D 140 GLY VAL LYS LEU THR THR SER LYS GLY LYS SER ILE MET SEQRES 9 D 140 ALA GLY TYR PHE GLU GLU SER LEU ILE THR THR TYR THR SEQRES 10 D 140 GLY LYS LEU ALA GLY ILE LYS GLY GLY ALA GLY SER ASP SEQRES 11 D 140 ILE ASP ARG LEU GLY LEU ILE PHE LEU LYS SEQRES 1 E 140 ASP ASN TYR ILE TYR SER THR GLU VAL GLY GLY VAL GLY SEQRES 2 E 140 GLY THR PRO PHE THR PHE MET GLN GLU SER GLY THR ILE SEQRES 3 E 140 THR SER ILE LYS PHE ASN TRP SER ASP GLN TYR LYS LEU SEQRES 4 E 140 LEU HIS HIS ILE GLU VAL LYS PHE ILE ASN ASN ALA ASN SEQRES 5 E 140 ILE TYR ALA THR GLY ASP PRO LYS GLY ASN HIS GLU VAL SEQRES 6 E 140 ILE LEU GLU ILE ASP ASP ASP GLU THR ILE ILE GLY SER SEQRES 7 E 140 VAL ILE GLY TYR LYS LYS GLY ASN ASP GLY ARG CYS THR SEQRES 8 E 140 GLY VAL LYS LEU THR THR SER LYS GLY LYS SER ILE MET SEQRES 9 E 140 ALA GLY TYR PHE GLU GLU SER LEU ILE THR THR TYR THR SEQRES 10 E 140 GLY LYS LEU ALA GLY ILE LYS GLY GLY ALA GLY SER ASP SEQRES 11 E 140 ILE ASP ARG LEU GLY LEU ILE PHE LEU LYS SEQRES 1 F 140 ASP ASN TYR ILE TYR SER THR GLU VAL GLY GLY VAL GLY SEQRES 2 F 140 GLY THR PRO PHE THR PHE MET GLN GLU SER GLY THR ILE SEQRES 3 F 140 THR SER ILE LYS PHE ASN TRP SER ASP GLN TYR LYS LEU SEQRES 4 F 140 LEU HIS HIS ILE GLU VAL LYS PHE ILE ASN ASN ALA ASN SEQRES 5 F 140 ILE TYR ALA THR GLY ASP PRO LYS GLY ASN HIS GLU VAL SEQRES 6 F 140 ILE LEU GLU ILE ASP ASP ASP GLU THR ILE ILE GLY SER SEQRES 7 F 140 VAL ILE GLY TYR LYS LYS GLY ASN ASP GLY ARG CYS THR SEQRES 8 F 140 GLY VAL LYS LEU THR THR SER LYS GLY LYS SER ILE MET SEQRES 9 F 140 ALA GLY TYR PHE GLU GLU SER LEU ILE THR THR TYR THR SEQRES 10 F 140 GLY LYS LEU ALA GLY ILE LYS GLY GLY ALA GLY SER ASP SEQRES 11 F 140 ILE ASP ARG LEU GLY LEU ILE PHE LEU LYS SEQRES 1 C 140 ASP ASN TYR ILE TYR SER THR GLU VAL GLY GLY VAL GLY SEQRES 2 C 140 GLY THR PRO PHE THR PHE MET GLN GLU SER GLY THR ILE SEQRES 3 C 140 THR SER ILE LYS PHE ASN TRP SER ASP GLN TYR LYS LEU SEQRES 4 C 140 LEU HIS HIS ILE GLU VAL LYS PHE ILE ASN ASN ALA ASN SEQRES 5 C 140 ILE TYR ALA THR GLY ASP PRO LYS GLY ASN HIS GLU VAL SEQRES 6 C 140 ILE LEU GLU ILE ASP ASP ASP GLU THR ILE ILE GLY SER SEQRES 7 C 140 VAL ILE GLY TYR LYS LYS GLY ASN ASP GLY ARG CYS THR SEQRES 8 C 140 GLY VAL LYS LEU THR THR SER LYS GLY LYS SER ILE MET SEQRES 9 C 140 ALA GLY TYR PHE GLU GLU SER LEU ILE THR THR TYR THR SEQRES 10 C 140 GLY LYS LEU ALA GLY ILE LYS GLY GLY ALA GLY SER ASP SEQRES 11 C 140 ILE ASP ARG LEU GLY LEU ILE PHE LEU LYS HET BMA H 1 12 HET MAN H 2 11 HET MAN H 3 11 HET BMA I 1 12 HET MAN I 2 11 HET MAN I 3 11 HET BMA J 1 12 HET MAN J 2 11 HET MAN J 3 11 HET EDO B 301 4 HET GOL B 302 6 HET GOL A 201 6 HET EDO A 202 4 HET EDO D 301 4 HET GOL D 302 6 HET GOL D 303 6 HET GOL D 304 6 HET GOL E 401 6 HET GOL F 301 6 HET GOL C 201 6 HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 8 BMA 3(C6 H12 O6) FORMUL 8 MAN 6(C6 H12 O6) FORMUL 11 EDO 3(C2 H6 O2) FORMUL 12 GOL 8(C3 H8 O3) FORMUL 22 HOH *61(H2 O) SHEET 1 AA1 3 TYR B 7 TYR B 9 0 SHEET 2 AA1 3 ILE B 135 LEU B 143 -1 O PHE B 142 N ILE B 8 SHEET 3 AA1 3 VAL B 13 GLY B 14 -1 N VAL B 13 O LEU B 138 SHEET 1 AA2 4 TYR B 7 TYR B 9 0 SHEET 2 AA2 4 ILE B 135 LEU B 143 -1 O PHE B 142 N ILE B 8 SHEET 3 AA2 4 LEU B 124 ALA B 131 -1 N ALA B 125 O ILE B 141 SHEET 4 AA2 4 THR B 19 PHE B 23 -1 N PHE B 23 O ILE B 127 SHEET 1 AA3 8 ASN B 54 GLY B 61 0 SHEET 2 AA3 8 LEU B 44 PHE B 51 -1 N VAL B 49 O TYR B 58 SHEET 3 AA3 8 ILE B 30 TRP B 37 -1 N ASN B 36 O HIS B 46 SHEET 4 AA3 8 HIS B 67 GLU B 72 -1 O LEU B 71 N ILE B 33 SHEET 5 AA3 8 SER E 115 THR E 118 1 O THR E 118 N ILE B 70 SHEET 6 AA3 8 ILE E 79 LYS E 87 -1 N TYR E 86 O SER E 115 SHEET 7 AA3 8 ARG E 93 THR E 101 -1 O THR E 100 N GLY E 81 SHEET 8 AA3 8 SER E 106 GLY E 110 -1 O ALA E 109 N VAL E 97 SHEET 1 AA4 8 SER B 106 GLY B 110 0 SHEET 2 AA4 8 ARG B 93 THR B 101 -1 N VAL B 97 O ALA B 109 SHEET 3 AA4 8 ILE B 79 LYS B 87 -1 N GLY B 81 O THR B 100 SHEET 4 AA4 8 SER B 115 THR B 118 -1 O ILE B 117 N ILE B 84 SHEET 5 AA4 8 HIS G 67 GLU G 72 1 O ILE G 70 N THR B 118 SHEET 6 AA4 8 ILE G 30 TRP G 37 -1 N ILE G 33 O LEU G 71 SHEET 7 AA4 8 LEU G 44 PHE G 51 -1 O HIS G 45 N ASN G 36 SHEET 8 AA4 8 ASN G 54 GLY G 61 -1 O THR G 60 N ILE G 47 SHEET 1 AA5 3 ILE G 8 TYR G 9 0 SHEET 2 AA5 3 ILE G 135 PHE G 142 -1 O PHE G 142 N ILE G 8 SHEET 3 AA5 3 VAL G 13 GLY G 14 -1 N VAL G 13 O LEU G 138 SHEET 1 AA6 4 ILE G 8 TYR G 9 0 SHEET 2 AA6 4 ILE G 135 PHE G 142 -1 O PHE G 142 N ILE G 8 SHEET 3 AA6 4 LEU G 124 ALA G 131 -1 N LYS G 128 O GLY G 139 SHEET 4 AA6 4 THR G 19 PHE G 23 -1 N PHE G 23 O ILE G 127 SHEET 1 AA7 8 SER G 106 GLY G 110 0 SHEET 2 AA7 8 ARG G 93 THR G 101 -1 N VAL G 97 O ALA G 109 SHEET 3 AA7 8 ILE G 79 LYS G 87 -1 N LYS G 87 O ARG G 93 SHEET 4 AA7 8 SER G 115 THR G 118 -1 O SER G 115 N TYR G 86 SHEET 5 AA7 8 HIS C 67 GLU C 72 1 O GLU C 72 N THR G 118 SHEET 6 AA7 8 ILE C 30 TRP C 37 -1 N ILE C 33 O LEU C 71 SHEET 7 AA7 8 LEU C 44 PHE C 51 -1 O HIS C 46 N ASN C 36 SHEET 8 AA7 8 ASN C 54 GLY C 61 -1 O TYR C 58 N VAL C 49 SHEET 1 AA8 3 TYR A 7 TYR A 9 0 SHEET 2 AA8 3 ILE A 135 LEU A 143 -1 O PHE A 142 N ILE A 8 SHEET 3 AA8 3 VAL A 13 GLY A 14 -1 N VAL A 13 O LEU A 138 SHEET 1 AA9 4 TYR A 7 TYR A 9 0 SHEET 2 AA9 4 ILE A 135 LEU A 143 -1 O PHE A 142 N ILE A 8 SHEET 3 AA9 4 LEU A 124 ALA A 131 -1 N ALA A 125 O ILE A 141 SHEET 4 AA9 4 THR A 19 PHE A 23 -1 N PHE A 23 O ILE A 127 SHEET 1 AB1 8 ASN A 54 GLY A 61 0 SHEET 2 AB1 8 LEU A 44 PHE A 51 -1 N VAL A 49 O TYR A 58 SHEET 3 AB1 8 ILE A 30 TRP A 37 -1 N ASN A 36 O HIS A 46 SHEET 4 AB1 8 HIS A 67 GLU A 72 -1 O VAL A 69 N PHE A 35 SHEET 5 AB1 8 SER F 115 THR F 118 1 O THR F 118 N GLU A 72 SHEET 6 AB1 8 ILE F 79 LYS F 87 -1 N TYR F 86 O SER F 115 SHEET 7 AB1 8 ARG F 93 THR F 101 -1 O THR F 95 N GLY F 85 SHEET 8 AB1 8 SER F 106 GLY F 110 -1 O ALA F 109 N VAL F 97 SHEET 1 AB2 8 SER A 106 GLY A 110 0 SHEET 2 AB2 8 ARG A 93 THR A 101 -1 N VAL A 97 O ALA A 109 SHEET 3 AB2 8 ILE A 79 LYS A 87 -1 N GLY A 81 O THR A 100 SHEET 4 AB2 8 SER A 115 THR A 118 -1 O SER A 115 N TYR A 86 SHEET 5 AB2 8 HIS D 67 GLU D 72 1 O ILE D 70 N THR A 118 SHEET 6 AB2 8 ILE D 30 TRP D 37 -1 N ILE D 33 O LEU D 71 SHEET 7 AB2 8 LEU D 44 PHE D 51 -1 O HIS D 45 N ASN D 36 SHEET 8 AB2 8 ASN D 54 GLY D 61 -1 O TYR D 58 N VAL D 49 SHEET 1 AB3 3 TYR D 7 TYR D 9 0 SHEET 2 AB3 3 ILE D 135 LEU D 143 -1 O PHE D 142 N ILE D 8 SHEET 3 AB3 3 VAL D 13 GLY D 14 -1 N VAL D 13 O LEU D 138 SHEET 1 AB4 4 TYR D 7 TYR D 9 0 SHEET 2 AB4 4 ILE D 135 LEU D 143 -1 O PHE D 142 N ILE D 8 SHEET 3 AB4 4 LEU D 124 ALA D 131 -1 N ALA D 125 O ILE D 141 SHEET 4 AB4 4 THR D 19 PHE D 23 -1 N PHE D 23 O ILE D 127 SHEET 1 AB5 8 SER D 106 GLY D 110 0 SHEET 2 AB5 8 ARG D 93 THR D 101 -1 N LEU D 99 O ILE D 107 SHEET 3 AB5 8 ILE D 79 LYS D 87 -1 N GLY D 81 O THR D 100 SHEET 4 AB5 8 SER D 115 THR D 118 -1 O SER D 115 N TYR D 86 SHEET 5 AB5 8 HIS E 67 GLU E 72 1 O GLU E 72 N THR D 118 SHEET 6 AB5 8 ILE E 30 TRP E 37 -1 N ILE E 33 O LEU E 71 SHEET 7 AB5 8 LEU E 44 PHE E 51 -1 O HIS E 46 N ASN E 36 SHEET 8 AB5 8 ASN E 54 GLY E 61 -1 O TYR E 58 N VAL E 49 SHEET 1 AB6 3 TYR E 7 TYR E 9 0 SHEET 2 AB6 3 ILE E 135 LEU E 143 -1 O PHE E 142 N ILE E 8 SHEET 3 AB6 3 VAL E 13 GLY E 14 -1 N VAL E 13 O LEU E 138 SHEET 1 AB7 4 TYR E 7 TYR E 9 0 SHEET 2 AB7 4 ILE E 135 LEU E 143 -1 O PHE E 142 N ILE E 8 SHEET 3 AB7 4 LEU E 124 ALA E 131 -1 N LYS E 128 O GLY E 139 SHEET 4 AB7 4 THR E 19 PHE E 23 -1 N PHE E 23 O ILE E 127 SHEET 1 AB8 3 TYR F 7 TYR F 9 0 SHEET 2 AB8 3 ILE F 135 LEU F 143 -1 O PHE F 142 N ILE F 8 SHEET 3 AB8 3 VAL F 13 GLY F 14 -1 N VAL F 13 O LEU F 138 SHEET 1 AB9 4 TYR F 7 TYR F 9 0 SHEET 2 AB9 4 ILE F 135 LEU F 143 -1 O PHE F 142 N ILE F 8 SHEET 3 AB9 4 LEU F 124 ALA F 131 -1 N LYS F 128 O GLY F 139 SHEET 4 AB9 4 THR F 19 PHE F 23 -1 N PHE F 23 O ILE F 127 SHEET 1 AC1 8 ASN F 54 GLY F 61 0 SHEET 2 AC1 8 LEU F 44 PHE F 51 -1 N VAL F 49 O TYR F 58 SHEET 3 AC1 8 ILE F 30 TRP F 37 -1 N LYS F 34 O GLU F 48 SHEET 4 AC1 8 HIS F 67 GLU F 72 -1 O VAL F 69 N PHE F 35 SHEET 5 AC1 8 SER C 115 THR C 118 1 O THR C 118 N GLU F 72 SHEET 6 AC1 8 ILE C 79 LYS C 87 -1 N TYR C 86 O SER C 115 SHEET 7 AC1 8 ARG C 93 THR C 101 -1 O ARG C 93 N LYS C 87 SHEET 8 AC1 8 SER C 106 GLY C 110 -1 O ALA C 109 N VAL C 97 SHEET 1 AC2 3 TYR C 7 TYR C 9 0 SHEET 2 AC2 3 ILE C 135 LEU C 143 -1 O PHE C 142 N ILE C 8 SHEET 3 AC2 3 VAL C 13 GLY C 14 -1 N VAL C 13 O LEU C 138 SHEET 1 AC3 4 TYR C 7 TYR C 9 0 SHEET 2 AC3 4 ILE C 135 LEU C 143 -1 O PHE C 142 N ILE C 8 SHEET 3 AC3 4 LEU C 124 ALA C 131 -1 N ALA C 125 O ILE C 141 SHEET 4 AC3 4 THR C 19 PHE C 23 -1 N PHE C 23 O ILE C 127 LINK O3 BMA H 1 C1 MAN H 2 1555 1555 1.43 LINK O6 BMA H 1 C1 MAN H 3 1555 1555 1.46 LINK O3 BMA I 1 C1 MAN I 2 1555 1555 1.49 LINK O6 BMA I 1 C1 MAN I 3 1555 1555 1.45 LINK O3 BMA J 1 C1 MAN J 2 1555 1555 1.38 LINK O6 BMA J 1 C1 MAN J 3 1555 1555 1.43 CRYST1 55.770 157.220 163.180 90.00 90.00 90.00 P 2 21 21 28 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017931 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006361 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006128 0.00000