HEADER TRANSFERASE 03-APR-20 7BU1 TITLE CRYSTAL STRUCTURE OF TRMO FROM PSEUDOMONAS AERUGINOSA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TRNA (ADENINE(37)-N6)-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: TRMO, UPF0066 PROTEIN,TRNA (N6- COMPND 5 THREONYLCARBAMOYLADENOSINE(37)-N6)-METHYLTRANSFERASE TRMO; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: RCSF, TSAA, TSAA_3, C0044_25415, CAZ10_20550, DT376_18640, SOURCE 5 DY930_12780, E4V10_08585, IPC1481_19460, IPC1509_00145, IPC47_19985, SOURCE 6 IPC669_23210, PAMH19_1683, RW109_RW109_02414; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.P.FAN,L.WANG,W.H.HU,C.W.YANG REVDAT 2 29-NOV-23 7BU1 1 REMARK REVDAT 1 07-APR-21 7BU1 0 JRNL AUTH C.P.FAN,L.WANG,W.H.HU,C.W.YANG JRNL TITL CRYSTAL STRUCTURE OF TRMO FROM PSEUDOMONAS AERUGINOSA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.49 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : GEOSTD + MONOMER LIBRARY + CDL V1.2 REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.49 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 18420 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 922 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.2700 - 4.7700 1.00 2642 140 0.2243 0.2732 REMARK 3 2 4.7700 - 3.7900 1.00 2525 132 0.1917 0.2159 REMARK 3 3 3.7900 - 3.3100 1.00 2491 132 0.2217 0.2736 REMARK 3 4 3.3100 - 3.0100 1.00 2470 130 0.2425 0.3479 REMARK 3 5 3.0100 - 2.7900 1.00 2475 130 0.2714 0.3134 REMARK 3 6 2.7900 - 2.6300 1.00 2463 130 0.2591 0.2802 REMARK 3 7 2.6300 - 2.4900 0.99 2432 128 0.2865 0.3405 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.324 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.916 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.13 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3233 REMARK 3 ANGLE : 0.961 4432 REMARK 3 CHIRALITY : 0.054 501 REMARK 3 PLANARITY : 0.007 573 REMARK 3 DIHEDRAL : 5.878 1923 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1 THROUGH 61 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.0708 -7.1932 14.8175 REMARK 3 T TENSOR REMARK 3 T11: 0.4466 T22: 0.3462 REMARK 3 T33: 0.3935 T12: 0.0941 REMARK 3 T13: -0.0846 T23: -0.0437 REMARK 3 L TENSOR REMARK 3 L11: 4.4651 L22: 1.4197 REMARK 3 L33: 4.7425 L12: -0.2969 REMARK 3 L13: 2.8665 L23: 0.6873 REMARK 3 S TENSOR REMARK 3 S11: 0.4315 S12: 0.6316 S13: -0.5772 REMARK 3 S21: -0.1695 S22: 0.0927 S23: 0.0039 REMARK 3 S31: 0.7840 S32: 0.5613 S33: -0.4452 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 62 THROUGH 155 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.9876 0.2393 13.9668 REMARK 3 T TENSOR REMARK 3 T11: 0.4022 T22: 0.3170 REMARK 3 T33: 0.3139 T12: 0.0087 REMARK 3 T13: 0.0230 T23: 0.0039 REMARK 3 L TENSOR REMARK 3 L11: 4.9770 L22: 2.8883 REMARK 3 L33: 5.0882 L12: -0.2022 REMARK 3 L13: 3.9390 L23: 0.1031 REMARK 3 S TENSOR REMARK 3 S11: 0.1843 S12: 0.3536 S13: -0.1865 REMARK 3 S21: 0.0304 S22: 0.0129 S23: -0.1688 REMARK 3 S31: -0.0698 S32: 0.4473 S33: -0.1780 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 156 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0231 5.4535 29.6220 REMARK 3 T TENSOR REMARK 3 T11: 0.3870 T22: 0.4917 REMARK 3 T33: 0.4074 T12: -0.0889 REMARK 3 T13: -0.0097 T23: 0.0648 REMARK 3 L TENSOR REMARK 3 L11: 2.4608 L22: 6.7091 REMARK 3 L33: 5.8783 L12: 0.3183 REMARK 3 L13: 0.8917 L23: 0.4023 REMARK 3 S TENSOR REMARK 3 S11: 0.1070 S12: 0.1140 S13: 0.0713 REMARK 3 S21: 0.1305 S22: -0.1163 S23: -0.7358 REMARK 3 S31: -0.1716 S32: 0.5602 S33: 0.0117 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -27.0850 0.0488 7.0281 REMARK 3 T TENSOR REMARK 3 T11: 0.3320 T22: 0.4075 REMARK 3 T33: 0.3808 T12: -0.0099 REMARK 3 T13: 0.0094 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 2.8283 L22: 3.9157 REMARK 3 L33: 6.3062 L12: -0.6937 REMARK 3 L13: 3.4574 L23: -2.2787 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: -0.6301 S13: -0.3593 REMARK 3 S21: 0.0772 S22: 0.2923 S23: 0.4047 REMARK 3 S31: 0.1309 S32: -0.8717 S33: -0.3075 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 109 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.8320 -1.7376 5.8038 REMARK 3 T TENSOR REMARK 3 T11: 0.3572 T22: 0.2580 REMARK 3 T33: 0.3017 T12: -0.0260 REMARK 3 T13: -0.0452 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 5.9283 L22: 1.6166 REMARK 3 L33: 6.6119 L12: -1.8270 REMARK 3 L13: 2.8227 L23: 0.7627 REMARK 3 S TENSOR REMARK 3 S11: 0.4028 S12: 0.3261 S13: -0.1150 REMARK 3 S21: -0.4051 S22: -0.2405 S23: -0.2107 REMARK 3 S31: 0.1001 S32: -0.1157 S33: -0.0364 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 110 THROUGH 160 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.9474 4.4795 1.0498 REMARK 3 T TENSOR REMARK 3 T11: 0.3406 T22: 0.2372 REMARK 3 T33: 0.3337 T12: -0.0177 REMARK 3 T13: -0.0395 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 2.6183 L22: 0.7456 REMARK 3 L33: 8.3723 L12: 0.2638 REMARK 3 L13: 3.1965 L23: 0.4576 REMARK 3 S TENSOR REMARK 3 S11: -0.0749 S12: 0.1384 S13: -0.1727 REMARK 3 S21: -0.0022 S22: 0.0600 S23: 0.0076 REMARK 3 S31: -0.3557 S32: 0.5526 S33: 0.0168 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 161 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -30.9937 3.1899 -16.7398 REMARK 3 T TENSOR REMARK 3 T11: 0.3987 T22: 0.2381 REMARK 3 T33: 0.3661 T12: 0.0297 REMARK 3 T13: 0.0029 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 3.3971 L22: 2.0943 REMARK 3 L33: 9.4081 L12: -0.4278 REMARK 3 L13: -0.8674 L23: 1.9607 REMARK 3 S TENSOR REMARK 3 S11: 0.0643 S12: 0.0403 S13: 0.0564 REMARK 3 S21: -0.0284 S22: 0.2130 S23: 0.0888 REMARK 3 S31: 0.1512 S32: 0.0050 S33: -0.2439 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN 'A' AND (RESID 1 THROUGH 11 OR REMARK 3 RESID 13 THROUGH 17 OR RESID 19 THROUGH REMARK 3 23 OR RESID 25 THROUGH 37 OR RESID 39 REMARK 3 THROUGH 41 OR RESID 43 OR RESID 45 REMARK 3 THROUGH 109 OR RESID 111 THROUGH 112 OR REMARK 3 RESID 114 THROUGH 143 OR RESID 145 REMARK 3 THROUGH 168 OR RESID 170 THROUGH 174 OR REMARK 3 RESID 176 THROUGH 191 OR RESID 198 REMARK 3 THROUGH 229)) REMARK 3 SELECTION : (CHAIN 'B' AND (RESID 0 OR RESID 2 REMARK 3 THROUGH 11 OR RESID 13 THROUGH 17 OR REMARK 3 RESID 19 THROUGH 23 OR RESID 25 THROUGH REMARK 3 37 OR RESID 39 THROUGH 41 OR RESID 43 OR REMARK 3 RESID 45 THROUGH 66 OR RESID 85 THROUGH REMARK 3 109 OR RESID 111 THROUGH 112 OR RESID 114 REMARK 3 THROUGH 143 OR RESID 145 THROUGH 149 OR REMARK 3 RESID 153 THROUGH 168 OR RESID 170 REMARK 3 THROUGH 174 OR RESID 176 THROUGH 229)) REMARK 3 ATOM PAIRS NUMBER : NULL REMARK 3 RMSD : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BU1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016474. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : PIXEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18474 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.490 REMARK 200 RESOLUTION RANGE LOW (A) : 47.270 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.14700 REMARK 200 R SYM (I) : 0.14700 REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : 1.40500 REMARK 200 R SYM FOR SHELL (I) : 1.40500 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1XQB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES (PH 7.5), 1.2 M K2HPO4, PH REMARK 280 7.50, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.42050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 64.10100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.99000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 64.10100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.42050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.99000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 SER A -4 REMARK 465 GLU A -3 REMARK 465 PHE A -2 REMARK 465 GLU A -1 REMARK 465 LEU A 0 REMARK 465 LEU A 66 REMARK 465 GLU A 67 REMARK 465 ASP A 68 REMARK 465 LYS A 69 REMARK 465 PRO A 70 REMARK 465 ARG A 71 REMARK 465 LEU A 72 REMARK 465 LYS A 73 REMARK 465 VAL A 74 REMARK 465 ARG A 75 REMARK 465 PRO A 76 REMARK 465 PRO A 77 REMARK 465 ARG A 78 REMARK 465 LEU A 79 REMARK 465 GLY A 80 REMARK 465 GLY A 81 REMARK 465 ASN A 82 REMARK 465 ARG A 83 REMARK 465 ALA A 150 REMARK 465 PRO A 151 REMARK 465 PRO A 152 REMARK 465 PRO A 192 REMARK 465 ALA A 193 REMARK 465 TYR A 194 REMARK 465 GLY A 230 REMARK 465 ASP A 231 REMARK 465 GLY B -5 REMARK 465 SER B -4 REMARK 465 GLU B -3 REMARK 465 PHE B -2 REMARK 465 GLU B 67 REMARK 465 ASP B 68 REMARK 465 LYS B 69 REMARK 465 LEU B 72 REMARK 465 LYS B 73 REMARK 465 VAL B 74 REMARK 465 ARG B 75 REMARK 465 PRO B 76 REMARK 465 PRO B 77 REMARK 465 ARG B 78 REMARK 465 LEU B 79 REMARK 465 GLY B 80 REMARK 465 GLY B 81 REMARK 465 ASN B 82 REMARK 465 ARG B 83 REMARK 465 ARG B 191 REMARK 465 PRO B 192 REMARK 465 ALA B 193 REMARK 465 TYR B 194 REMARK 465 GLN B 195 REMARK 465 LYS B 196 REMARK 465 GLY B 230 REMARK 465 ASP B 231 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 470 ARG A 12 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 23 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 38 CG CD1 CD2 REMARK 470 ASP A 42 CG OD1 OD2 REMARK 470 GLN A 43 CG CD OE1 NE2 REMARK 470 VAL A 44 CG1 CG2 REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 GLU A 48 CG CD OE1 OE2 REMARK 470 GLN A 52 CG CD OE1 NE2 REMARK 470 SER A 84 OG REMARK 470 GLU A 110 CG CD OE1 OE2 REMARK 470 ARG A 113 CG CD NE CZ NH1 NH2 REMARK 470 ILE A 147 CG1 CG2 CD1 REMARK 470 ASP A 149 CG OD1 OD2 REMARK 470 GLU A 161 CG CD OE1 OE2 REMARK 470 ARG A 164 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 165 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 169 CG CD OE1 OE2 REMARK 470 ASP A 189 CG OD1 OD2 REMARK 470 PRO A 190 CG CD REMARK 470 ARG A 191 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 195 CG CD OE1 NE2 REMARK 470 LYS A 196 CG CD CE NZ REMARK 470 ARG A 201 CG CD NE CZ NH1 NH2 REMARK 470 GLU B -1 CG CD OE1 OE2 REMARK 470 LEU B 0 CG CD1 CD2 REMARK 470 LYS B 18 CG CD CE NZ REMARK 470 ARG B 23 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 24 CG CD OE1 NE2 REMARK 470 GLN B 43 CG CD OE1 NE2 REMARK 470 GLU B 45 CG CD OE1 OE2 REMARK 470 GLU B 48 CG CD OE1 OE2 REMARK 470 GLN B 52 CG CD OE1 NE2 REMARK 470 LEU B 66 CG CD1 CD2 REMARK 470 PRO B 70 CG CD REMARK 470 ARG B 71 CG CD NE CZ NH1 NH2 REMARK 470 SER B 84 OG REMARK 470 ARG B 144 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 147 CG1 CG2 CD1 REMARK 470 ASP B 149 CG OD1 OD2 REMARK 470 GLU B 161 CG CD OE1 OE2 REMARK 470 ARG B 164 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 165 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 175 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 189 CG OD1 OD2 REMARK 470 PRO B 190 CG CD REMARK 470 PRO B 197 CG CD REMARK 470 ARG B 201 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 129 NZ LYS B 131 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 202 O ARG B 202 2455 0.99 REMARK 500 NH2 ARG A 202 C ARG B 202 2455 1.43 REMARK 500 CZ ARG A 202 O ARG B 202 2455 1.93 REMARK 500 NH2 ARG A 202 CA ARG B 202 2455 2.05 REMARK 500 NH2 ARG A 202 N ARG B 202 2455 2.11 REMARK 500 NE ARG A 202 CB ARG B 202 2455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 202 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 PRO B 190 N - CA - CB ANGL. DEV. = 7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 28 78.69 -111.44 REMARK 500 ALA A 31 85.12 -67.41 REMARK 500 ASN A 97 -11.93 71.25 REMARK 500 GLU A 110 -157.29 -118.53 REMARK 500 ASP A 189 82.63 57.31 REMARK 500 PRO A 190 86.68 -61.43 REMARK 500 TRP A 208 -124.84 51.92 REMARK 500 GLN B 24 79.19 -107.68 REMARK 500 ALA B 28 73.12 -110.02 REMARK 500 ALA B 31 91.31 -69.82 REMARK 500 ALA B 65 75.45 -106.73 REMARK 500 GLU B 110 -159.74 -121.96 REMARK 500 ALA B 148 -81.49 -87.58 REMARK 500 ASP B 149 -50.15 74.81 REMARK 500 GLN B 188 -89.66 -101.50 REMARK 500 ASP B 189 -164.78 55.56 REMARK 500 TRP B 208 -127.02 56.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM B 301 DBREF1 7BU1 A 1 231 UNP A0A080VNW8_PSEAI DBREF2 7BU1 A A0A080VNW8 1 231 DBREF1 7BU1 B 1 231 UNP A0A080VNW8_PSEAI DBREF2 7BU1 B A0A080VNW8 1 231 SEQADV 7BU1 GLY A -5 UNP A0A080VNW EXPRESSION TAG SEQADV 7BU1 SER A -4 UNP A0A080VNW EXPRESSION TAG SEQADV 7BU1 GLU A -3 UNP A0A080VNW EXPRESSION TAG SEQADV 7BU1 PHE A -2 UNP A0A080VNW EXPRESSION TAG SEQADV 7BU1 GLU A -1 UNP A0A080VNW EXPRESSION TAG SEQADV 7BU1 LEU A 0 UNP A0A080VNW EXPRESSION TAG SEQADV 7BU1 GLY B -5 UNP A0A080VNW EXPRESSION TAG SEQADV 7BU1 SER B -4 UNP A0A080VNW EXPRESSION TAG SEQADV 7BU1 GLU B -3 UNP A0A080VNW EXPRESSION TAG SEQADV 7BU1 PHE B -2 UNP A0A080VNW EXPRESSION TAG SEQADV 7BU1 GLU B -1 UNP A0A080VNW EXPRESSION TAG SEQADV 7BU1 LEU B 0 UNP A0A080VNW EXPRESSION TAG SEQRES 1 A 237 GLY SER GLU PHE GLU LEU MET THR HIS SER VAL SER PRO SEQRES 2 A 237 ILE GLY TYR ILE ARG SER CYS PHE MET GLU LYS PHE ALA SEQRES 3 A 237 ILE PRO ARG GLN PRO LEU LEU ALA PRO ALA ALA ARG GLY SEQRES 4 A 237 THR LEU GLU LEU LEU PRO PRO PHE ASP GLN VAL GLU ALA SEQRES 5 A 237 LEU GLU GLY LEU GLU GLN VAL SER HIS VAL TRP LEU LEU SEQRES 6 A 237 PHE LEU PHE HIS GLN ALA LEU GLU ASP LYS PRO ARG LEU SEQRES 7 A 237 LYS VAL ARG PRO PRO ARG LEU GLY GLY ASN ARG SER LEU SEQRES 8 A 237 GLY VAL PHE ALA THR ARG ALA THR HIS ARG PRO ASN GLY SEQRES 9 A 237 ILE GLY GLN SER VAL VAL ARG LEU GLU GLY PHE GLU ALA SEQRES 10 A 237 GLY ARG LEU TRP LEU SER GLY ILE ASP LEU LEU ASP GLY SEQRES 11 A 237 THR PRO VAL LEU ASP ILE LYS PRO TYR VAL PRO TYR ALA SEQRES 12 A 237 ASP ALA VAL ALA ASP ALA ARG ASN GLY ILE ALA ASP ALA SEQRES 13 A 237 PRO PRO PRO GLY ILE ALA VAL GLU TRP SER GLU GLN ALA SEQRES 14 A 237 ARG ARG GLN ALA HIS GLU HIS GLY GLN ARG LEU ARG GLN SEQRES 15 A 237 PRO VAL ALA GLU LEU ILE GLU GLN CYS LEU ALA GLN ASP SEQRES 16 A 237 PRO ARG PRO ALA TYR GLN LYS PRO GLU PRO GLY ARG ARG SEQRES 17 A 237 TYR GLY VAL ARG LEU TRP ASP LEU ASP VAL HIS TRP HIS SEQRES 18 A 237 TYR PRO ARG PRO ASP LEU ILE ARG VAL LEU ASP VAL ALA SEQRES 19 A 237 GLY GLY ASP SEQRES 1 B 237 GLY SER GLU PHE GLU LEU MET THR HIS SER VAL SER PRO SEQRES 2 B 237 ILE GLY TYR ILE ARG SER CYS PHE MET GLU LYS PHE ALA SEQRES 3 B 237 ILE PRO ARG GLN PRO LEU LEU ALA PRO ALA ALA ARG GLY SEQRES 4 B 237 THR LEU GLU LEU LEU PRO PRO PHE ASP GLN VAL GLU ALA SEQRES 5 B 237 LEU GLU GLY LEU GLU GLN VAL SER HIS VAL TRP LEU LEU SEQRES 6 B 237 PHE LEU PHE HIS GLN ALA LEU GLU ASP LYS PRO ARG LEU SEQRES 7 B 237 LYS VAL ARG PRO PRO ARG LEU GLY GLY ASN ARG SER LEU SEQRES 8 B 237 GLY VAL PHE ALA THR ARG ALA THR HIS ARG PRO ASN GLY SEQRES 9 B 237 ILE GLY GLN SER VAL VAL ARG LEU GLU GLY PHE GLU ALA SEQRES 10 B 237 GLY ARG LEU TRP LEU SER GLY ILE ASP LEU LEU ASP GLY SEQRES 11 B 237 THR PRO VAL LEU ASP ILE LYS PRO TYR VAL PRO TYR ALA SEQRES 12 B 237 ASP ALA VAL ALA ASP ALA ARG ASN GLY ILE ALA ASP ALA SEQRES 13 B 237 PRO PRO PRO GLY ILE ALA VAL GLU TRP SER GLU GLN ALA SEQRES 14 B 237 ARG ARG GLN ALA HIS GLU HIS GLY GLN ARG LEU ARG GLN SEQRES 15 B 237 PRO VAL ALA GLU LEU ILE GLU GLN CYS LEU ALA GLN ASP SEQRES 16 B 237 PRO ARG PRO ALA TYR GLN LYS PRO GLU PRO GLY ARG ARG SEQRES 17 B 237 TYR GLY VAL ARG LEU TRP ASP LEU ASP VAL HIS TRP HIS SEQRES 18 B 237 TYR PRO ARG PRO ASP LEU ILE ARG VAL LEU ASP VAL ALA SEQRES 19 B 237 GLY GLY ASP HET SAM A 301 27 HET SAM B 301 27 HETNAM SAM S-ADENOSYLMETHIONINE FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 5 HOH *16(H2 O) HELIX 1 AA1 GLN A 24 ALA A 28 5 5 HELIX 2 AA2 GLN A 43 GLU A 48 5 6 HELIX 3 AA3 GLY A 49 VAL A 53 5 5 HELIX 4 AA4 GLY A 86 THR A 90 5 5 HELIX 5 AA5 ARG A 95 ASN A 97 5 3 HELIX 6 AA6 VAL A 134 ALA A 139 1 6 HELIX 7 AA7 SER A 160 ARG A 175 1 16 HELIX 8 AA8 PRO A 177 ALA A 187 1 11 HELIX 9 AA9 GLN B 24 ALA B 28 5 5 HELIX 10 AB1 PRO B 39 ASP B 42 5 4 HELIX 11 AB2 GLN B 43 GLU B 48 5 6 HELIX 12 AB3 GLY B 49 VAL B 53 5 5 HELIX 13 AB4 GLY B 86 THR B 90 5 5 HELIX 14 AB5 VAL B 134 ALA B 139 1 6 HELIX 15 AB6 SER B 160 ARG B 175 1 16 HELIX 16 AB7 PRO B 177 ALA B 187 1 11 SHEET 1 AA1 2 HIS A 3 VAL A 5 0 SHEET 2 AA1 2 HIS B 3 VAL B 5 -1 O HIS B 3 N VAL A 5 SHEET 1 AA2 7 GLY A 9 SER A 13 0 SHEET 2 AA2 7 GLY A 33 LEU A 37 -1 O THR A 34 N ARG A 12 SHEET 3 AA2 7 ARG A 113 SER A 117 -1 O LEU A 116 N GLY A 33 SHEET 4 AA2 7 ILE A 99 GLU A 110 -1 N GLY A 108 O TRP A 115 SHEET 5 AA2 7 HIS A 55 LEU A 61 -1 N PHE A 60 O GLY A 100 SHEET 6 AA2 7 PRO A 126 PRO A 132 -1 O LYS A 131 N TRP A 57 SHEET 7 AA2 7 GLY A 9 SER A 13 -1 N GLY A 9 O VAL A 127 SHEET 1 AA3 4 ALA A 156 TRP A 159 0 SHEET 2 AA3 4 LEU A 221 ALA A 228 1 O ILE A 222 N GLU A 158 SHEET 3 AA3 4 LEU A 210 ARG A 218 -1 N HIS A 213 O ASP A 226 SHEET 4 AA3 4 ARG A 202 LEU A 207 -1 N TYR A 203 O TRP A 214 SHEET 1 AA4 7 GLY B 9 SER B 13 0 SHEET 2 AA4 7 ARG B 32 LEU B 37 -1 O THR B 34 N ARG B 12 SHEET 3 AA4 7 ARG B 113 SER B 117 -1 O LEU B 116 N GLY B 33 SHEET 4 AA4 7 ILE B 99 GLU B 110 -1 N GLU B 110 O ARG B 113 SHEET 5 AA4 7 HIS B 55 LEU B 61 -1 N PHE B 60 O GLY B 100 SHEET 6 AA4 7 PRO B 126 PRO B 132 -1 O LYS B 131 N TRP B 57 SHEET 7 AA4 7 GLY B 9 SER B 13 -1 N GLY B 9 O VAL B 127 SHEET 1 AA5 4 ALA B 156 TRP B 159 0 SHEET 2 AA5 4 LEU B 221 ALA B 228 1 O ILE B 222 N GLU B 158 SHEET 3 AA5 4 LEU B 210 ARG B 218 -1 N ASP B 211 O ALA B 228 SHEET 4 AA5 4 ARG B 202 LEU B 207 -1 N TYR B 203 O TRP B 214 CISPEP 1 PRO A 39 PRO A 40 0 6.55 SITE 1 AC1 14 LYS A 18 ILE A 21 PHE A 62 HIS A 63 SITE 2 AC1 14 GLN A 64 ARG A 91 THR A 93 GLY A 100 SITE 3 AC1 14 GLN A 101 SER A 102 ASP A 120 LEU A 122 SITE 4 AC1 14 THR A 125 HOH A 404 SITE 1 AC2 15 LYS B 18 ILE B 21 PHE B 62 HIS B 63 SITE 2 AC2 15 GLN B 64 ALA B 65 ARG B 91 THR B 93 SITE 3 AC2 15 GLY B 100 GLN B 101 SER B 102 ASP B 120 SITE 4 AC2 15 LEU B 122 THR B 125 HOH B 404 CRYST1 56.841 69.980 128.202 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017593 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014290 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007800 0.00000