HEADER VIRUS 06-APR-20 7BUE TITLE CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 2 COMPLEXED WITH FAB SIGN- TITLE 2 3C AT PH 5.0 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIGN-3C FAB HEAVY CHAIN; COMPND 3 CHAIN: G, H, J; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SIGN-3C FAB LIGHT CHAIN; COMPND 7 CHAIN: I, L, K; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DENGUE SEROTYPE 2 E PROTEIN ECTODOMAIN; COMPND 11 CHAIN: B, A, C SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 6 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_TAXID: 9606; SOURCE 10 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 11 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM_CELL_LINE: HEK293-6E; SOURCE 13 MOL_ID: 3; SOURCE 14 ORGANISM_SCIENTIFIC: DENGUE VIRUS 2; SOURCE 15 ORGANISM_TAXID: 11060 KEYWDS ANTIBODY, NEUTRALIZATION, VIRUS EXPDTA ELECTRON MICROSCOPY MDLTYP CA ATOMS ONLY, CHAIN G, I, B, A, C, H, L, J, K AUTHOR S.ZHANG,S.V.CHEW,X.N.LIM,T.S.NG,V.A.KOSTYUCHENKO,S.M.LOK REVDAT 2 27-MAR-24 7BUE 1 REMARK REVDAT 1 13-MAY-20 7BUE 0 JRNL AUTH S.ZHANG,T.LOY,T.S.NG,X.N.LIM,S.V.CHEW,T.Y.TAN,M.XU, JRNL AUTH 2 V.A.KOSTYUCHENKO,F.TUKIJAN,J.SHI,K.FINK,S.M.LOK JRNL TITL A HUMAN ANTIBODY NEUTRALIZES DIFFERENT FLAVIVIRUSES BY USING JRNL TITL 2 DIFFERENT MECHANISMS. JRNL REF CELL REP V. 31 07584 2020 JRNL REFN ESSN 2211-1247 JRNL PMID 32348755 JRNL DOI 10.1016/J.CELREP.2020.107584 REMARK 2 REMARK 2 RESOLUTION. 7.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : NULL REMARK 3 RECONSTRUCTION SCHEMA : FOURIER SPACE REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 7.800 REMARK 3 NUMBER OF PARTICLES : 8181 REMARK 3 CTF CORRECTION METHOD : PHASE FLIPPING AND AMPLITUDE REMARK 3 CORRECTION REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 7BUE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016500. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : COMPLEX OF DENGUE VIRUS REMARK 245 SEROTYPE 2 WITH SIGN-3C FAB; REMARK 245 SIGN-3C FAB; DENGUE VIRUS REMARK 245 SEROTYPE 2 REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 8.00 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: G, I, B, A, C, H, L, J, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.361803 0.587785 -0.723607 -0.00001 REMARK 350 BIOMT2 2 -0.262865 0.809017 0.525731 0.00001 REMARK 350 BIOMT3 2 0.894427 0.000000 0.447214 -0.00002 REMARK 350 BIOMT1 3 -0.670820 0.688191 -0.276393 0.00000 REMARK 350 BIOMT2 3 0.162460 0.500000 0.850651 0.00002 REMARK 350 BIOMT3 3 0.723607 0.525731 -0.447214 -0.00003 REMARK 350 BIOMT1 4 -0.670820 0.162460 0.723607 0.00003 REMARK 350 BIOMT2 4 0.688191 0.500000 0.525731 0.00000 REMARK 350 BIOMT3 4 -0.276393 0.850651 -0.447214 -0.00003 REMARK 350 BIOMT1 5 0.361803 -0.262865 0.894427 0.00002 REMARK 350 BIOMT2 5 0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 5 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 6 -0.052786 0.688191 0.723607 0.00002 REMARK 350 BIOMT2 6 0.688191 -0.500000 0.525731 0.00001 REMARK 350 BIOMT3 6 0.723607 0.525731 -0.447214 -0.00003 REMARK 350 BIOMT1 7 0.447214 0.525731 0.723607 0.00001 REMARK 350 BIOMT2 7 0.850651 0.000000 -0.525731 -0.00001 REMARK 350 BIOMT3 7 -0.276393 0.850651 -0.447214 -0.00003 REMARK 350 BIOMT1 8 0.670820 0.688191 0.276393 0.00000 REMARK 350 BIOMT2 8 -0.162460 0.500000 -0.850651 -0.00001 REMARK 350 BIOMT3 8 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 9 0.309017 0.951057 0.000000 0.00000 REMARK 350 BIOMT2 9 -0.951057 0.309017 0.000000 0.00001 REMARK 350 BIOMT3 9 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 10 -0.138197 0.951057 0.276393 0.00000 REMARK 350 BIOMT2 10 -0.425325 -0.309017 0.850651 0.00003 REMARK 350 BIOMT3 10 0.894427 0.000000 0.447214 -0.00002 REMARK 350 BIOMT1 11 -0.309017 -0.951057 0.000000 0.00002 REMARK 350 BIOMT2 11 -0.951057 0.309017 0.000000 0.00001 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 -0.00003 REMARK 350 BIOMT1 12 0.138197 -0.951057 -0.276393 0.00000 REMARK 350 BIOMT2 12 -0.425325 -0.309017 0.850651 0.00003 REMARK 350 BIOMT3 12 -0.894427 0.000000 -0.447214 -0.00002 REMARK 350 BIOMT1 13 0.052786 -0.688191 -0.723607 0.00000 REMARK 350 BIOMT2 13 0.688191 -0.500000 0.525731 0.00001 REMARK 350 BIOMT3 13 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 14 -0.447214 -0.525731 -0.723607 0.00000 REMARK 350 BIOMT2 14 0.850651 0.000000 -0.525731 -0.00001 REMARK 350 BIOMT3 14 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 15 -0.670820 -0.688191 -0.276393 0.00001 REMARK 350 BIOMT2 15 -0.162460 0.500000 -0.850651 -0.00001 REMARK 350 BIOMT3 15 0.723607 -0.525731 -0.447214 -0.00003 REMARK 350 BIOMT1 16 -0.638197 0.262865 -0.723607 0.00000 REMARK 350 BIOMT2 16 0.262865 -0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 16 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 17 -0.947214 -0.162460 0.276393 0.00002 REMARK 350 BIOMT2 17 -0.162460 -0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 17 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 18 -0.052786 -0.688191 0.723607 0.00003 REMARK 350 BIOMT2 18 -0.688191 -0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 18 0.723607 -0.525731 -0.447214 -0.00003 REMARK 350 BIOMT1 19 0.809017 -0.587785 0.000000 0.00000 REMARK 350 BIOMT2 19 -0.587785 -0.809017 0.000000 0.00002 REMARK 350 BIOMT3 19 0.000000 0.000000 -1.000000 -0.00003 REMARK 350 BIOMT1 20 0.447214 0.000000 -0.894427 -0.00001 REMARK 350 BIOMT2 20 0.000000 -1.000000 0.000000 0.00001 REMARK 350 BIOMT3 20 -0.894427 0.000000 -0.447214 -0.00002 REMARK 350 BIOMT1 21 -0.447214 0.525731 -0.723607 0.00000 REMARK 350 BIOMT2 21 -0.850651 0.000000 0.525731 0.00002 REMARK 350 BIOMT3 21 0.276393 0.850651 0.447214 -0.00002 REMARK 350 BIOMT1 22 -0.947214 0.162460 0.276393 0.00002 REMARK 350 BIOMT2 22 0.162460 -0.500000 0.850651 0.00002 REMARK 350 BIOMT3 22 0.276393 0.850651 0.447213 -0.00002 REMARK 350 BIOMT1 23 -0.138197 -0.425325 0.894427 0.00003 REMARK 350 BIOMT2 23 0.951057 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 23 0.276393 0.850651 0.447214 -0.00002 REMARK 350 BIOMT1 24 0.861803 -0.425325 0.276393 0.00000 REMARK 350 BIOMT2 24 0.425325 0.309017 -0.850651 -0.00001 REMARK 350 BIOMT3 24 0.276393 0.850651 0.447214 -0.00002 REMARK 350 BIOMT1 25 0.670820 0.162460 -0.723607 -0.00001 REMARK 350 BIOMT2 25 -0.688191 0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 25 0.276393 0.850651 0.447214 -0.00002 REMARK 350 BIOMT1 26 -0.138197 -0.951056 0.276393 0.00002 REMARK 350 BIOMT2 26 0.425325 -0.309017 -0.850651 -0.00001 REMARK 350 BIOMT3 26 0.894427 0.000000 0.447214 -0.00002 REMARK 350 BIOMT1 27 0.447214 -0.850651 -0.276393 0.00000 REMARK 350 BIOMT2 27 -0.525731 0.000000 -0.850651 0.00000 REMARK 350 BIOMT3 27 0.723607 0.525731 -0.447214 -0.00003 REMARK 350 BIOMT1 28 0.138197 -0.425325 -0.894427 0.00000 REMARK 350 BIOMT2 28 -0.951057 -0.309017 0.000000 0.00002 REMARK 350 BIOMT3 28 -0.276393 0.850651 -0.447214 -0.00003 REMARK 350 BIOMT1 29 -0.638197 -0.262866 -0.723607 0.00000 REMARK 350 BIOMT2 29 -0.262866 -0.809017 0.525731 0.00002 REMARK 350 BIOMT3 29 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 30 -0.809017 -0.587785 0.000000 0.00002 REMARK 350 BIOMT2 30 0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 30 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 31 -0.361803 0.587785 0.723607 0.00002 REMARK 350 BIOMT2 31 0.262866 0.809017 -0.525731 -0.00001 REMARK 350 BIOMT3 31 -0.894427 0.000000 -0.447214 -0.00002 REMARK 350 BIOMT1 32 0.361803 0.262866 0.894427 0.00002 REMARK 350 BIOMT2 32 -0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 32 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 33 0.861803 0.425325 0.276393 0.00000 REMARK 350 BIOMT2 33 -0.425325 0.309017 0.850651 0.00002 REMARK 350 BIOMT3 33 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 34 0.447214 0.850651 -0.276393 0.00000 REMARK 350 BIOMT2 34 0.525731 0.000000 0.850651 0.00002 REMARK 350 BIOMT3 34 0.723607 -0.525731 -0.447214 -0.00003 REMARK 350 BIOMT1 35 -0.309017 0.951057 0.000000 0.00000 REMARK 350 BIOMT2 35 0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 35 0.000000 0.000000 -1.000000 -0.00003 REMARK 350 BIOMT1 36 0.947214 -0.162460 -0.276393 0.00000 REMARK 350 BIOMT2 36 0.162460 -0.500000 0.850651 0.00002 REMARK 350 BIOMT3 36 -0.276393 -0.850651 -0.447214 -0.00002 REMARK 350 BIOMT1 37 0.138197 0.425325 -0.894427 -0.00001 REMARK 350 BIOMT2 37 0.951056 -0.309017 0.000000 0.00000 REMARK 350 BIOMT3 37 -0.276393 -0.850651 -0.447214 -0.00002 REMARK 350 BIOMT1 38 -0.861803 0.425325 -0.276393 0.00000 REMARK 350 BIOMT2 38 0.425325 0.309017 -0.850651 -0.00001 REMARK 350 BIOMT3 38 -0.276393 -0.850651 -0.447213 -0.00002 REMARK 350 BIOMT1 39 -0.670820 -0.162460 0.723607 0.00003 REMARK 350 BIOMT2 39 -0.688191 0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 39 -0.276393 -0.850651 -0.447214 -0.00002 REMARK 350 BIOMT1 40 0.447214 -0.525731 0.723607 0.00002 REMARK 350 BIOMT2 40 -0.850651 0.000000 0.525731 0.00002 REMARK 350 BIOMT3 40 -0.276393 -0.850651 -0.447214 -0.00002 REMARK 350 BIOMT1 41 -0.447214 -0.850651 0.276393 0.00002 REMARK 350 BIOMT2 41 0.525731 0.000000 0.850651 0.00002 REMARK 350 BIOMT3 41 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 42 0.309017 -0.951057 0.000000 0.00001 REMARK 350 BIOMT2 42 0.951057 0.309017 0.000000 0.00000 REMARK 350 BIOMT3 42 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 43 0.361803 -0.587785 -0.723607 0.00000 REMARK 350 BIOMT2 43 0.262866 0.809017 -0.525731 -0.00001 REMARK 350 BIOMT3 43 0.894427 0.000000 0.447214 -0.00002 REMARK 350 BIOMT1 44 -0.361803 -0.262866 -0.894427 0.00000 REMARK 350 BIOMT2 44 -0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 44 0.723607 0.525731 -0.447214 -0.00003 REMARK 350 BIOMT1 45 -0.861803 -0.425325 -0.276393 0.00001 REMARK 350 BIOMT2 45 -0.425325 0.309017 0.850651 0.00002 REMARK 350 BIOMT3 45 -0.276393 0.850651 -0.447214 -0.00003 REMARK 350 BIOMT1 46 -0.361803 0.262866 -0.894427 0.00000 REMARK 350 BIOMT2 46 0.587785 0.809017 0.000000 0.00000 REMARK 350 BIOMT3 46 0.723607 -0.525731 -0.447214 -0.00003 REMARK 350 BIOMT1 47 -1.000000 0.000000 0.000000 0.00002 REMARK 350 BIOMT2 47 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 47 0.000000 0.000000 -1.000000 -0.00003 REMARK 350 BIOMT1 48 -0.361803 -0.587785 0.723607 0.00003 REMARK 350 BIOMT2 48 -0.262866 0.809017 0.525731 0.00001 REMARK 350 BIOMT3 48 -0.894427 0.000000 -0.447214 -0.00002 REMARK 350 BIOMT1 49 0.670820 -0.688191 0.276393 0.00001 REMARK 350 BIOMT2 49 0.162460 0.500000 0.850651 0.00002 REMARK 350 BIOMT3 49 -0.723607 -0.525731 0.447214 0.00000 REMARK 350 BIOMT1 50 0.670820 -0.162460 -0.723607 0.00000 REMARK 350 BIOMT2 50 0.688191 0.500000 0.525731 0.00000 REMARK 350 BIOMT3 50 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 51 0.947214 0.162460 -0.276393 0.00000 REMARK 350 BIOMT2 51 -0.162460 -0.500000 -0.850651 0.00000 REMARK 350 BIOMT3 51 -0.276393 0.850651 -0.447214 -0.00003 REMARK 350 BIOMT1 52 0.052786 0.688191 -0.723607 0.00000 REMARK 350 BIOMT2 52 -0.688191 -0.500000 -0.525731 0.00000 REMARK 350 BIOMT3 52 -0.723607 0.525731 0.447214 0.00000 REMARK 350 BIOMT1 53 -0.809017 0.587785 0.000000 0.00001 REMARK 350 BIOMT2 53 -0.587785 -0.809017 0.000000 0.00002 REMARK 350 BIOMT3 53 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 54 -0.447214 0.000000 0.894427 0.00003 REMARK 350 BIOMT2 54 0.000000 -1.000000 0.000000 0.00001 REMARK 350 BIOMT3 54 0.894427 0.000000 0.447214 -0.00002 REMARK 350 BIOMT1 55 0.638197 -0.262866 0.723607 0.00002 REMARK 350 BIOMT2 55 0.262866 -0.809017 -0.525731 0.00000 REMARK 350 BIOMT3 55 0.723607 0.525731 -0.447214 -0.00003 REMARK 350 BIOMT1 56 -0.138197 0.425325 0.894427 0.00002 REMARK 350 BIOMT2 56 -0.951057 -0.309017 0.000000 0.00002 REMARK 350 BIOMT3 56 0.276393 -0.850651 0.447214 0.00000 REMARK 350 BIOMT1 57 0.638197 0.262866 0.723607 0.00001 REMARK 350 BIOMT2 57 -0.262866 -0.809017 0.525731 0.00002 REMARK 350 BIOMT3 57 0.723607 -0.525731 -0.447214 -0.00003 REMARK 350 BIOMT1 58 0.809017 0.587785 0.000000 0.00000 REMARK 350 BIOMT2 58 0.587785 -0.809017 0.000000 0.00000 REMARK 350 BIOMT3 58 0.000000 0.000000 -1.000000 -0.00003 REMARK 350 BIOMT1 59 0.138197 0.951056 -0.276393 0.00000 REMARK 350 BIOMT2 59 0.425325 -0.309017 -0.850651 -0.00001 REMARK 350 BIOMT3 59 -0.894427 0.000000 -0.447214 -0.00002 REMARK 350 BIOMT1 60 -0.447214 0.850651 0.276393 0.00001 REMARK 350 BIOMT2 60 -0.525731 0.000000 -0.850651 0.00000 REMARK 350 BIOMT3 60 -0.723607 -0.525731 0.447214 0.00000 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-30196 RELATED DB: EMDB REMARK 900 CRYO-EM STRUCTURE OF DENGUE VIRUS SEROTYPE 2 COMPLEXED WITH FAB REMARK 900 SIGN-3C AT PH 5.0 DBREF 7BUE G 1 132 PDB 7BUE 7BUE 1 132 DBREF 7BUE I 1 107 PDB 7BUE 7BUE 1 107 DBREF 7BUE B 1 394 PDB 7BUE 7BUE 1 394 DBREF 7BUE A 1 394 PDB 7BUE 7BUE 1 394 DBREF 7BUE C 1 394 PDB 7BUE 7BUE 1 394 DBREF 7BUE H 1 132 PDB 7BUE 7BUE 1 132 DBREF 7BUE L 1 107 PDB 7BUE 7BUE 1 107 DBREF 7BUE J 1 132 PDB 7BUE 7BUE 1 132 DBREF 7BUE K 1 107 PDB 7BUE 7BUE 1 107 SEQRES 1 G 132 GLU VAL GLN LEU VAL GLN SER GLY PRO ASP VAL GLU LYS SEQRES 2 G 132 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 G 132 TYR THR PHE THR SER ASN TYR ILE HIS TRP VAL ARG GLN SEQRES 4 G 132 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY VAL ILE ASN SEQRES 5 G 132 PRO ARG GLY GLY SER THR ALA SER ALA GLN LYS PHE GLN SEQRES 6 G 132 GLY ARG ILE THR MET THR ARG ASP THR SER THR SER THR SEQRES 7 G 132 VAL TYR MET GLU LEU SER SER LEU ARG SER ASP ASP THR SEQRES 8 G 132 ALA VAL TYR TYR CYS ALA ARG GLY GLY ARG ALA LEU PHE SEQRES 9 G 132 TYR ASP SER TYR THR THR PRO ARG ASP GLY GLY SER TRP SEQRES 10 G 132 TRP PHE ASP PRO TRP GLY GLN GLY SER LEU VAL THR VAL SEQRES 11 G 132 SER SER SEQRES 1 I 107 ASP ILE GLN LEU THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 I 107 SER VAL GLY ASP ARG VAL THR PHE THR CYS GLN ALA SER SEQRES 3 I 107 GLN ASP ILE ARG LYS TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 I 107 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 I 107 ASN LEU LYS THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 I 107 GLY SER GLY THR ASP PHE THR PHE THR ILE SER SER LEU SEQRES 7 I 107 GLN PRO GLU ASP VAL ALA THR TYR TYR CYS GLN GLN PHE SEQRES 8 I 107 ASP ASP LEU PRO ILE THR PHE GLY GLN GLY THR ARG LEU SEQRES 9 I 107 GLN ILE LYS SEQRES 1 B 394 MET ARG CYS ILE GLY ILE SER ASN ARG ASP PHE VAL GLU SEQRES 2 B 394 GLY VAL SER GLY GLY SER TRP VAL ASP ILE VAL LEU GLU SEQRES 3 B 394 HIS GLY SER CYS VAL THR THR MET ALA LYS ASN LYS PRO SEQRES 4 B 394 THR LEU ASP PHE GLU LEU ILE LYS THR GLU ALA LYS HIS SEQRES 5 B 394 PRO ALA THR LEU ARG LYS TYR CYS VAL GLU ALA LYS LEU SEQRES 6 B 394 THR ASN THR THR THR ALA SER ARG CYS PRO THR GLN GLY SEQRES 7 B 394 GLU PRO SER LEU ASN GLU GLU GLN ASP LYS ARG PHE VAL SEQRES 8 B 394 CYS LYS HIS SER MET VAL ASP ARG GLY TRP GLY ASN GLY SEQRES 9 B 394 CYS GLY LEU PHE GLY LYS GLY GLY ILE VAL THR CYS ALA SEQRES 10 B 394 MET PHE THR CYS LYS LYS ASN MET GLU GLY LYS VAL VAL SEQRES 11 B 394 GLN PRO GLU ASN LEU GLU TYR THR ILE VAL ILE THR PRO SEQRES 12 B 394 HIS SER GLY GLU GLU ASN ALA VAL GLY ASN ASP THR GLY SEQRES 13 B 394 LYS HIS GLY LYS GLU ILE LYS VAL THR PRO GLN SER SER SEQRES 14 B 394 ILE THR GLU ALA GLU LEU THR GLY TYR GLY THR VAL THR SEQRES 15 B 394 MET GLU CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU SEQRES 16 B 394 MET VAL LEU LEU GLN MET GLU ASN LYS ALA TRP LEU VAL SEQRES 17 B 394 HIS ARG GLN TRP PHE LEU ASP LEU PRO LEU PRO TRP LEU SEQRES 18 B 394 PRO GLY ALA ASP THR GLN GLY SER ASN TRP ILE GLN LYS SEQRES 19 B 394 GLU THR LEU VAL THR PHE LYS ASN PRO HIS ALA LYS LYS SEQRES 20 B 394 GLN ASP VAL VAL VAL LEU GLY SER GLN GLU GLY ALA MET SEQRES 21 B 394 HIS THR ALA LEU THR GLY ALA THR GLU ILE GLN MET SER SEQRES 22 B 394 SER GLY ASN LEU LEU PHE THR GLY HIS LEU LYS CYS ARG SEQRES 23 B 394 LEU ARG MET ASP LYS LEU GLN LEU LYS GLY MET SER TYR SEQRES 24 B 394 SER MET CYS THR GLY LYS PHE LYS VAL VAL LYS GLU ILE SEQRES 25 B 394 ALA GLU THR GLN HIS GLY THR ILE VAL ILE ARG VAL GLN SEQRES 26 B 394 TYR GLU GLY ASP GLY SER PRO CYS LYS ILE PRO PHE GLU SEQRES 27 B 394 ILE MET ASP LEU GLU LYS ARG HIS VAL LEU GLY ARG LEU SEQRES 28 B 394 ILE THR VAL ASN PRO ILE VAL THR GLU LYS ASP SER PRO SEQRES 29 B 394 VAL ASN ILE GLU ALA GLU PRO PRO PHE GLY ASP SER TYR SEQRES 30 B 394 ILE ILE ILE GLY VAL GLU PRO GLY GLN LEU LYS LEU SER SEQRES 31 B 394 TRP PHE LYS LYS SEQRES 1 A 394 MET ARG CYS ILE GLY ILE SER ASN ARG ASP PHE VAL GLU SEQRES 2 A 394 GLY VAL SER GLY GLY SER TRP VAL ASP ILE VAL LEU GLU SEQRES 3 A 394 HIS GLY SER CYS VAL THR THR MET ALA LYS ASN LYS PRO SEQRES 4 A 394 THR LEU ASP PHE GLU LEU ILE LYS THR GLU ALA LYS HIS SEQRES 5 A 394 PRO ALA THR LEU ARG LYS TYR CYS VAL GLU ALA LYS LEU SEQRES 6 A 394 THR ASN THR THR THR ALA SER ARG CYS PRO THR GLN GLY SEQRES 7 A 394 GLU PRO SER LEU ASN GLU GLU GLN ASP LYS ARG PHE VAL SEQRES 8 A 394 CYS LYS HIS SER MET VAL ASP ARG GLY TRP GLY ASN GLY SEQRES 9 A 394 CYS GLY LEU PHE GLY LYS GLY GLY ILE VAL THR CYS ALA SEQRES 10 A 394 MET PHE THR CYS LYS LYS ASN MET GLU GLY LYS VAL VAL SEQRES 11 A 394 GLN PRO GLU ASN LEU GLU TYR THR ILE VAL ILE THR PRO SEQRES 12 A 394 HIS SER GLY GLU GLU ASN ALA VAL GLY ASN ASP THR GLY SEQRES 13 A 394 LYS HIS GLY LYS GLU ILE LYS VAL THR PRO GLN SER SER SEQRES 14 A 394 ILE THR GLU ALA GLU LEU THR GLY TYR GLY THR VAL THR SEQRES 15 A 394 MET GLU CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU SEQRES 16 A 394 MET VAL LEU LEU GLN MET GLU ASN LYS ALA TRP LEU VAL SEQRES 17 A 394 HIS ARG GLN TRP PHE LEU ASP LEU PRO LEU PRO TRP LEU SEQRES 18 A 394 PRO GLY ALA ASP THR GLN GLY SER ASN TRP ILE GLN LYS SEQRES 19 A 394 GLU THR LEU VAL THR PHE LYS ASN PRO HIS ALA LYS LYS SEQRES 20 A 394 GLN ASP VAL VAL VAL LEU GLY SER GLN GLU GLY ALA MET SEQRES 21 A 394 HIS THR ALA LEU THR GLY ALA THR GLU ILE GLN MET SER SEQRES 22 A 394 SER GLY ASN LEU LEU PHE THR GLY HIS LEU LYS CYS ARG SEQRES 23 A 394 LEU ARG MET ASP LYS LEU GLN LEU LYS GLY MET SER TYR SEQRES 24 A 394 SER MET CYS THR GLY LYS PHE LYS VAL VAL LYS GLU ILE SEQRES 25 A 394 ALA GLU THR GLN HIS GLY THR ILE VAL ILE ARG VAL GLN SEQRES 26 A 394 TYR GLU GLY ASP GLY SER PRO CYS LYS ILE PRO PHE GLU SEQRES 27 A 394 ILE MET ASP LEU GLU LYS ARG HIS VAL LEU GLY ARG LEU SEQRES 28 A 394 ILE THR VAL ASN PRO ILE VAL THR GLU LYS ASP SER PRO SEQRES 29 A 394 VAL ASN ILE GLU ALA GLU PRO PRO PHE GLY ASP SER TYR SEQRES 30 A 394 ILE ILE ILE GLY VAL GLU PRO GLY GLN LEU LYS LEU SER SEQRES 31 A 394 TRP PHE LYS LYS SEQRES 1 C 394 MET ARG CYS ILE GLY ILE SER ASN ARG ASP PHE VAL GLU SEQRES 2 C 394 GLY VAL SER GLY GLY SER TRP VAL ASP ILE VAL LEU GLU SEQRES 3 C 394 HIS GLY SER CYS VAL THR THR MET ALA LYS ASN LYS PRO SEQRES 4 C 394 THR LEU ASP PHE GLU LEU ILE LYS THR GLU ALA LYS HIS SEQRES 5 C 394 PRO ALA THR LEU ARG LYS TYR CYS VAL GLU ALA LYS LEU SEQRES 6 C 394 THR ASN THR THR THR ALA SER ARG CYS PRO THR GLN GLY SEQRES 7 C 394 GLU PRO SER LEU ASN GLU GLU GLN ASP LYS ARG PHE VAL SEQRES 8 C 394 CYS LYS HIS SER MET VAL ASP ARG GLY TRP GLY ASN GLY SEQRES 9 C 394 CYS GLY LEU PHE GLY LYS GLY GLY ILE VAL THR CYS ALA SEQRES 10 C 394 MET PHE THR CYS LYS LYS ASN MET GLU GLY LYS VAL VAL SEQRES 11 C 394 GLN PRO GLU ASN LEU GLU TYR THR ILE VAL ILE THR PRO SEQRES 12 C 394 HIS SER GLY GLU GLU ASN ALA VAL GLY ASN ASP THR GLY SEQRES 13 C 394 LYS HIS GLY LYS GLU ILE LYS VAL THR PRO GLN SER SER SEQRES 14 C 394 ILE THR GLU ALA GLU LEU THR GLY TYR GLY THR VAL THR SEQRES 15 C 394 MET GLU CYS SER PRO ARG THR GLY LEU ASP PHE ASN GLU SEQRES 16 C 394 MET VAL LEU LEU GLN MET GLU ASN LYS ALA TRP LEU VAL SEQRES 17 C 394 HIS ARG GLN TRP PHE LEU ASP LEU PRO LEU PRO TRP LEU SEQRES 18 C 394 PRO GLY ALA ASP THR GLN GLY SER ASN TRP ILE GLN LYS SEQRES 19 C 394 GLU THR LEU VAL THR PHE LYS ASN PRO HIS ALA LYS LYS SEQRES 20 C 394 GLN ASP VAL VAL VAL LEU GLY SER GLN GLU GLY ALA MET SEQRES 21 C 394 HIS THR ALA LEU THR GLY ALA THR GLU ILE GLN MET SER SEQRES 22 C 394 SER GLY ASN LEU LEU PHE THR GLY HIS LEU LYS CYS ARG SEQRES 23 C 394 LEU ARG MET ASP LYS LEU GLN LEU LYS GLY MET SER TYR SEQRES 24 C 394 SER MET CYS THR GLY LYS PHE LYS VAL VAL LYS GLU ILE SEQRES 25 C 394 ALA GLU THR GLN HIS GLY THR ILE VAL ILE ARG VAL GLN SEQRES 26 C 394 TYR GLU GLY ASP GLY SER PRO CYS LYS ILE PRO PHE GLU SEQRES 27 C 394 ILE MET ASP LEU GLU LYS ARG HIS VAL LEU GLY ARG LEU SEQRES 28 C 394 ILE THR VAL ASN PRO ILE VAL THR GLU LYS ASP SER PRO SEQRES 29 C 394 VAL ASN ILE GLU ALA GLU PRO PRO PHE GLY ASP SER TYR SEQRES 30 C 394 ILE ILE ILE GLY VAL GLU PRO GLY GLN LEU LYS LEU SER SEQRES 31 C 394 TRP PHE LYS LYS SEQRES 1 H 132 GLU VAL GLN LEU VAL GLN SER GLY PRO ASP VAL GLU LYS SEQRES 2 H 132 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 H 132 TYR THR PHE THR SER ASN TYR ILE HIS TRP VAL ARG GLN SEQRES 4 H 132 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY VAL ILE ASN SEQRES 5 H 132 PRO ARG GLY GLY SER THR ALA SER ALA GLN LYS PHE GLN SEQRES 6 H 132 GLY ARG ILE THR MET THR ARG ASP THR SER THR SER THR SEQRES 7 H 132 VAL TYR MET GLU LEU SER SER LEU ARG SER ASP ASP THR SEQRES 8 H 132 ALA VAL TYR TYR CYS ALA ARG GLY GLY ARG ALA LEU PHE SEQRES 9 H 132 TYR ASP SER TYR THR THR PRO ARG ASP GLY GLY SER TRP SEQRES 10 H 132 TRP PHE ASP PRO TRP GLY GLN GLY SER LEU VAL THR VAL SEQRES 11 H 132 SER SER SEQRES 1 L 107 ASP ILE GLN LEU THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 L 107 SER VAL GLY ASP ARG VAL THR PHE THR CYS GLN ALA SER SEQRES 3 L 107 GLN ASP ILE ARG LYS TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 L 107 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 L 107 ASN LEU LYS THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 L 107 GLY SER GLY THR ASP PHE THR PHE THR ILE SER SER LEU SEQRES 7 L 107 GLN PRO GLU ASP VAL ALA THR TYR TYR CYS GLN GLN PHE SEQRES 8 L 107 ASP ASP LEU PRO ILE THR PHE GLY GLN GLY THR ARG LEU SEQRES 9 L 107 GLN ILE LYS SEQRES 1 J 132 GLU VAL GLN LEU VAL GLN SER GLY PRO ASP VAL GLU LYS SEQRES 2 J 132 PRO GLY ALA SER VAL LYS VAL SER CYS LYS ALA SER GLY SEQRES 3 J 132 TYR THR PHE THR SER ASN TYR ILE HIS TRP VAL ARG GLN SEQRES 4 J 132 ALA PRO GLY GLN GLY LEU GLU TRP MET GLY VAL ILE ASN SEQRES 5 J 132 PRO ARG GLY GLY SER THR ALA SER ALA GLN LYS PHE GLN SEQRES 6 J 132 GLY ARG ILE THR MET THR ARG ASP THR SER THR SER THR SEQRES 7 J 132 VAL TYR MET GLU LEU SER SER LEU ARG SER ASP ASP THR SEQRES 8 J 132 ALA VAL TYR TYR CYS ALA ARG GLY GLY ARG ALA LEU PHE SEQRES 9 J 132 TYR ASP SER TYR THR THR PRO ARG ASP GLY GLY SER TRP SEQRES 10 J 132 TRP PHE ASP PRO TRP GLY GLN GLY SER LEU VAL THR VAL SEQRES 11 J 132 SER SER SEQRES 1 K 107 ASP ILE GLN LEU THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 K 107 SER VAL GLY ASP ARG VAL THR PHE THR CYS GLN ALA SER SEQRES 3 K 107 GLN ASP ILE ARG LYS TYR LEU ASN TRP TYR GLN GLN LYS SEQRES 4 K 107 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR ASP ALA SER SEQRES 5 K 107 ASN LEU LYS THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 K 107 GLY SER GLY THR ASP PHE THR PHE THR ILE SER SER LEU SEQRES 7 K 107 GLN PRO GLU ASP VAL ALA THR TYR TYR CYS GLN GLN PHE SEQRES 8 K 107 ASP ASP LEU PRO ILE THR PHE GLY GLN GLY THR ARG LEU SEQRES 9 K 107 GLN ILE LYS CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000