HEADER IMMUNE SYSTEM 07-APR-20 7BUQ TITLE MCGAS BOUND WITH 23-CGAMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M-CGAS,2'3'-CGAMP SYNTHASE,MAB-21 DOMAIN-CONTAINING PROTEIN COMPND 5 1; COMPND 6 EC: 2.7.7.86; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CGAS, MB21D1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MCGAS, ACTIVATOR, INVERTED-ORIENTATION, METAL-ION BINDING PROTEIN, KEYWDS 2 IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR B.WANG,X.D.SU REVDAT 2 29-NOV-23 7BUQ 1 REMARK REVDAT 1 02-SEP-20 7BUQ 0 JRNL AUTH Z.ZHAO,Z.MA,B.WANG,Y.GUAN,X.D.SU,Z.JIANG JRNL TITL MN2+DIRECTLY ACTIVATES CGAS AND STRUCTURAL ANALYSIS SUGGESTS JRNL TITL 2 MN2+INDUCES A NONCANONICAL CATALYTIC SYNTHESIS OF JRNL TITL 3 2'3'-CGAMP. JRNL REF CELL REP V. 32 08053 2020 JRNL REFN ESSN 2211-1247 JRNL PMID 32814054 JRNL DOI 10.1016/J.CELREP.2020.108053 REMARK 2 REMARK 2 RESOLUTION. 3.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 13881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.254 REMARK 3 R VALUE (WORKING SET) : 0.249 REMARK 3 FREE R VALUE : 0.296 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1402 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.7200 - 6.6474 0.99 1289 150 0.2218 0.2518 REMARK 3 2 6.6474 - 5.2808 1.00 1286 148 0.2656 0.3143 REMARK 3 3 5.2808 - 4.6146 1.00 1292 142 0.2284 0.2584 REMARK 3 4 4.6146 - 4.1933 1.00 1280 139 0.2244 0.2673 REMARK 3 5 4.1933 - 3.8931 1.00 1281 143 0.2422 0.3507 REMARK 3 6 3.8931 - 3.6638 1.00 1266 140 0.2584 0.3020 REMARK 3 7 3.6638 - 3.4804 1.00 1281 158 0.2642 0.2933 REMARK 3 8 3.4804 - 3.3290 0.99 1270 122 0.2804 0.3620 REMARK 3 9 3.3290 - 3.2009 0.93 1192 136 0.3053 0.3443 REMARK 3 10 3.2009 - 3.0910 0.82 1042 124 0.3367 0.3845 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.370 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 67.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.1561 1.2781 -16.5842 REMARK 3 T TENSOR REMARK 3 T11: 0.3131 T22: 0.3088 REMARK 3 T33: 0.3109 T12: -0.0194 REMARK 3 T13: 0.0272 T23: -0.0140 REMARK 3 L TENSOR REMARK 3 L11: 0.3395 L22: 0.3660 REMARK 3 L33: 0.3942 L12: -0.1014 REMARK 3 L13: 0.1340 L23: -0.0901 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.0445 S13: 0.0540 REMARK 3 S21: 0.0358 S22: -0.0053 S23: -0.0284 REMARK 3 S31: 0.0222 S32: -0.0213 S33: 0.0238 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BUQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016524. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JAN-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL19U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97892 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 V715 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14136 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.091 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.25000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 3.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 5.40 REMARK 200 R MERGE FOR SHELL (I) : 1.04800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.7.16 REMARK 200 STARTING MODEL: 4K96 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 27.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.69 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M BIS REMARK 280 -TRIS, 25 % W/V PEG-3350, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 54.90600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 PRO A 4 REMARK 465 ARG A 5 REMARK 465 ARG A 6 REMARK 465 ARG A 7 REMARK 465 THR A 8 REMARK 465 THR A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 ARG A 12 REMARK 465 ALA A 13 REMARK 465 LYS A 14 REMARK 465 LYS A 15 REMARK 465 PRO A 16 REMARK 465 SER A 17 REMARK 465 ALA A 18 REMARK 465 LYS A 19 REMARK 465 ARG A 20 REMARK 465 ALA A 21 REMARK 465 PRO A 22 REMARK 465 THR A 23 REMARK 465 GLN A 24 REMARK 465 PRO A 25 REMARK 465 SER A 26 REMARK 465 ARG A 27 REMARK 465 THR A 28 REMARK 465 ARG A 29 REMARK 465 ALA A 30 REMARK 465 HIS A 31 REMARK 465 ALA A 32 REMARK 465 GLU A 33 REMARK 465 SER A 34 REMARK 465 CYS A 35 REMARK 465 GLY A 36 REMARK 465 PRO A 37 REMARK 465 GLN A 38 REMARK 465 ARG A 39 REMARK 465 GLY A 40 REMARK 465 ALA A 41 REMARK 465 ARG A 42 REMARK 465 SER A 43 REMARK 465 ARG A 44 REMARK 465 ARG A 45 REMARK 465 ALA A 46 REMARK 465 GLU A 47 REMARK 465 ARG A 48 REMARK 465 ASP A 49 REMARK 465 GLY A 50 REMARK 465 ASP A 51 REMARK 465 THR A 52 REMARK 465 THR A 53 REMARK 465 GLU A 54 REMARK 465 LYS A 55 REMARK 465 PRO A 56 REMARK 465 ARG A 57 REMARK 465 ALA A 58 REMARK 465 PRO A 59 REMARK 465 GLY A 60 REMARK 465 PRO A 61 REMARK 465 ARG A 62 REMARK 465 VAL A 63 REMARK 465 HIS A 64 REMARK 465 PRO A 65 REMARK 465 ALA A 66 REMARK 465 ARG A 67 REMARK 465 ALA A 68 REMARK 465 THR A 69 REMARK 465 GLU A 70 REMARK 465 LEU A 71 REMARK 465 THR A 72 REMARK 465 LYS A 73 REMARK 465 ASP A 74 REMARK 465 ALA A 75 REMARK 465 GLN A 76 REMARK 465 PRO A 77 REMARK 465 SER A 78 REMARK 465 ALA A 79 REMARK 465 MET A 80 REMARK 465 ASP A 81 REMARK 465 ALA A 82 REMARK 465 ALA A 83 REMARK 465 GLY A 84 REMARK 465 ALA A 85 REMARK 465 THR A 86 REMARK 465 ALA A 87 REMARK 465 ARG A 88 REMARK 465 PRO A 89 REMARK 465 ALA A 90 REMARK 465 VAL A 91 REMARK 465 ARG A 92 REMARK 465 VAL A 93 REMARK 465 PRO A 94 REMARK 465 GLN A 95 REMARK 465 GLN A 96 REMARK 465 GLN A 97 REMARK 465 ALA A 98 REMARK 465 ILE A 99 REMARK 465 LEU A 100 REMARK 465 ASP A 101 REMARK 465 PRO A 102 REMARK 465 GLU A 103 REMARK 465 LEU A 104 REMARK 465 PRO A 105 REMARK 465 ALA A 106 REMARK 465 VAL A 107 REMARK 465 ARG A 108 REMARK 465 GLU A 109 REMARK 465 PRO A 110 REMARK 465 GLN A 111 REMARK 465 PRO A 112 REMARK 465 PRO A 113 REMARK 465 ALA A 114 REMARK 465 ASP A 115 REMARK 465 PRO A 116 REMARK 465 GLU A 117 REMARK 465 ALA A 118 REMARK 465 ARG A 119 REMARK 465 LYS A 120 REMARK 465 VAL A 121 REMARK 465 VAL A 122 REMARK 465 ARG A 123 REMARK 465 GLY A 124 REMARK 465 PRO A 125 REMARK 465 SER A 126 REMARK 465 HIS A 127 REMARK 465 ARG A 128 REMARK 465 ARG A 129 REMARK 465 GLY A 130 REMARK 465 ALA A 131 REMARK 465 ARG A 132 REMARK 465 SER A 133 REMARK 465 THR A 134 REMARK 465 GLY A 135 REMARK 465 GLN A 136 REMARK 465 PRO A 137 REMARK 465 ARG A 138 REMARK 465 ALA A 139 REMARK 465 PRO A 140 REMARK 465 ARG A 141 REMARK 465 GLY A 142 REMARK 465 SER A 143 REMARK 465 ARG A 144 REMARK 465 LYS A 145 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 ASP B 3 REMARK 465 PRO B 4 REMARK 465 ARG B 5 REMARK 465 ARG B 6 REMARK 465 ARG B 7 REMARK 465 THR B 8 REMARK 465 THR B 9 REMARK 465 ALA B 10 REMARK 465 PRO B 11 REMARK 465 ARG B 12 REMARK 465 ALA B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 PRO B 16 REMARK 465 SER B 17 REMARK 465 ALA B 18 REMARK 465 LYS B 19 REMARK 465 ARG B 20 REMARK 465 ALA B 21 REMARK 465 PRO B 22 REMARK 465 THR B 23 REMARK 465 GLN B 24 REMARK 465 PRO B 25 REMARK 465 SER B 26 REMARK 465 ARG B 27 REMARK 465 THR B 28 REMARK 465 ARG B 29 REMARK 465 ALA B 30 REMARK 465 HIS B 31 REMARK 465 ALA B 32 REMARK 465 GLU B 33 REMARK 465 SER B 34 REMARK 465 CYS B 35 REMARK 465 GLY B 36 REMARK 465 PRO B 37 REMARK 465 GLN B 38 REMARK 465 ARG B 39 REMARK 465 GLY B 40 REMARK 465 ALA B 41 REMARK 465 ARG B 42 REMARK 465 SER B 43 REMARK 465 ARG B 44 REMARK 465 ARG B 45 REMARK 465 ALA B 46 REMARK 465 GLU B 47 REMARK 465 ARG B 48 REMARK 465 ASP B 49 REMARK 465 GLY B 50 REMARK 465 ASP B 51 REMARK 465 THR B 52 REMARK 465 THR B 53 REMARK 465 GLU B 54 REMARK 465 LYS B 55 REMARK 465 PRO B 56 REMARK 465 ARG B 57 REMARK 465 ALA B 58 REMARK 465 PRO B 59 REMARK 465 GLY B 60 REMARK 465 PRO B 61 REMARK 465 ARG B 62 REMARK 465 VAL B 63 REMARK 465 HIS B 64 REMARK 465 PRO B 65 REMARK 465 ALA B 66 REMARK 465 ARG B 67 REMARK 465 ALA B 68 REMARK 465 THR B 69 REMARK 465 GLU B 70 REMARK 465 LEU B 71 REMARK 465 THR B 72 REMARK 465 LYS B 73 REMARK 465 ASP B 74 REMARK 465 ALA B 75 REMARK 465 GLN B 76 REMARK 465 PRO B 77 REMARK 465 SER B 78 REMARK 465 ALA B 79 REMARK 465 MET B 80 REMARK 465 ASP B 81 REMARK 465 ALA B 82 REMARK 465 ALA B 83 REMARK 465 GLY B 84 REMARK 465 ALA B 85 REMARK 465 THR B 86 REMARK 465 ALA B 87 REMARK 465 ARG B 88 REMARK 465 PRO B 89 REMARK 465 ALA B 90 REMARK 465 VAL B 91 REMARK 465 ARG B 92 REMARK 465 VAL B 93 REMARK 465 PRO B 94 REMARK 465 GLN B 95 REMARK 465 GLN B 96 REMARK 465 GLN B 97 REMARK 465 ALA B 98 REMARK 465 ILE B 99 REMARK 465 LEU B 100 REMARK 465 ASP B 101 REMARK 465 PRO B 102 REMARK 465 GLU B 103 REMARK 465 LEU B 104 REMARK 465 PRO B 105 REMARK 465 ALA B 106 REMARK 465 VAL B 107 REMARK 465 ARG B 108 REMARK 465 GLU B 109 REMARK 465 PRO B 110 REMARK 465 GLN B 111 REMARK 465 PRO B 112 REMARK 465 PRO B 113 REMARK 465 ALA B 114 REMARK 465 ASP B 115 REMARK 465 PRO B 116 REMARK 465 GLU B 117 REMARK 465 ALA B 118 REMARK 465 ARG B 119 REMARK 465 LYS B 120 REMARK 465 VAL B 121 REMARK 465 VAL B 122 REMARK 465 ARG B 123 REMARK 465 GLY B 124 REMARK 465 PRO B 125 REMARK 465 SER B 126 REMARK 465 HIS B 127 REMARK 465 ARG B 128 REMARK 465 ARG B 129 REMARK 465 GLY B 130 REMARK 465 ALA B 131 REMARK 465 ARG B 132 REMARK 465 SER B 133 REMARK 465 THR B 134 REMARK 465 GLY B 135 REMARK 465 GLN B 136 REMARK 465 PRO B 137 REMARK 465 ARG B 138 REMARK 465 ALA B 139 REMARK 465 PRO B 140 REMARK 465 ARG B 141 REMARK 465 GLY B 142 REMARK 465 SER B 143 REMARK 465 ARG B 144 REMARK 465 LYS B 145 REMARK 465 GLU B 146 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 243 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 147 47.25 -90.09 REMARK 500 ASP A 163 -4.20 -148.55 REMARK 500 SER A 187 118.66 -162.33 REMARK 500 PHE A 189 37.22 -98.70 REMARK 500 THR A 197 47.92 -108.87 REMARK 500 LYS A 205 -93.71 -79.95 REMARK 500 SER A 207 85.56 -66.84 REMARK 500 PRO A 209 40.93 -87.17 REMARK 500 ASN A 210 -61.59 -137.11 REMARK 500 ARG A 222 56.24 33.32 REMARK 500 TYR A 229 -118.42 56.93 REMARK 500 GLU A 253 72.61 -118.60 REMARK 500 LYS A 278 -106.20 -55.48 REMARK 500 ASN A 300 -93.18 -153.12 REMARK 500 GLU A 302 -108.90 -163.18 REMARK 500 TRP A 331 -66.77 -127.88 REMARK 500 LYS A 353 46.28 -93.84 REMARK 500 ASN A 356 -164.06 -122.97 REMARK 500 SER A 357 -133.07 49.57 REMARK 500 LEU A 415 39.98 -94.31 REMARK 500 LEU A 465 82.18 -153.75 REMARK 500 LYS A 506 45.10 -155.97 REMARK 500 ASP B 148 63.76 -104.29 REMARK 500 LYS B 160 -99.07 6.26 REMARK 500 ASP B 163 -13.47 74.89 REMARK 500 ALA B 168 -12.79 -146.25 REMARK 500 GLN B 183 35.97 -95.68 REMARK 500 ARG B 185 -140.48 48.65 REMARK 500 SER B 199 -62.52 -136.03 REMARK 500 ALA B 208 72.89 56.90 REMARK 500 TYR B 229 -113.93 56.08 REMARK 500 GLU B 230 50.22 -146.29 REMARK 500 ARG B 244 -59.78 -135.97 REMARK 500 ASP B 279 -40.51 -159.09 REMARK 500 GLU B 302 -117.29 59.60 REMARK 500 TRP B 331 -72.06 -103.83 REMARK 500 SER B 357 -154.74 179.45 REMARK 500 PHE B 358 106.91 -58.16 REMARK 500 ASN B 377 70.25 -116.18 REMARK 500 SER B 388 45.51 -97.78 REMARK 500 LEU B 415 61.24 -112.60 REMARK 500 PHE B 476 37.07 -90.23 REMARK 500 PHE B 501 73.21 56.99 REMARK 500 LYS B 506 75.28 -112.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 378 NE2 REMARK 620 2 CYS A 384 SG 118.8 REMARK 620 3 CYS A 385 SG 105.5 130.1 REMARK 620 4 CYS A 392 SG 96.4 99.5 97.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 378 NE2 REMARK 620 2 CYS B 384 SG 107.6 REMARK 620 3 CYS B 385 SG 113.0 134.9 REMARK 620 4 CYS B 392 SG 83.7 101.5 101.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1SY A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1SY B 602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7BUJ RELATED DB: PDB DBREF 7BUQ A 1 507 UNP Q8C6L5 CGAS_MOUSE 1 507 DBREF 7BUQ B 1 507 UNP Q8C6L5 CGAS_MOUSE 1 507 SEQRES 1 A 507 MET GLU ASP PRO ARG ARG ARG THR THR ALA PRO ARG ALA SEQRES 2 A 507 LYS LYS PRO SER ALA LYS ARG ALA PRO THR GLN PRO SER SEQRES 3 A 507 ARG THR ARG ALA HIS ALA GLU SER CYS GLY PRO GLN ARG SEQRES 4 A 507 GLY ALA ARG SER ARG ARG ALA GLU ARG ASP GLY ASP THR SEQRES 5 A 507 THR GLU LYS PRO ARG ALA PRO GLY PRO ARG VAL HIS PRO SEQRES 6 A 507 ALA ARG ALA THR GLU LEU THR LYS ASP ALA GLN PRO SER SEQRES 7 A 507 ALA MET ASP ALA ALA GLY ALA THR ALA ARG PRO ALA VAL SEQRES 8 A 507 ARG VAL PRO GLN GLN GLN ALA ILE LEU ASP PRO GLU LEU SEQRES 9 A 507 PRO ALA VAL ARG GLU PRO GLN PRO PRO ALA ASP PRO GLU SEQRES 10 A 507 ALA ARG LYS VAL VAL ARG GLY PRO SER HIS ARG ARG GLY SEQRES 11 A 507 ALA ARG SER THR GLY GLN PRO ARG ALA PRO ARG GLY SER SEQRES 12 A 507 ARG LYS GLU PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 13 A 507 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 14 A 507 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 15 A 507 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 16 A 507 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 17 A 507 PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO SEQRES 18 A 507 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 19 A 507 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 20 A 507 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 21 A 507 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 22 A 507 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 23 A 507 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 24 A 507 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 25 A 507 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 26 A 507 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 27 A 507 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 28 A 507 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 29 A 507 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 30 A 507 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 31 A 507 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 32 A 507 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 33 A 507 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 34 A 507 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 35 A 507 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 36 A 507 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 37 A 507 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 38 A 507 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 39 A 507 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU SEQRES 1 B 507 MET GLU ASP PRO ARG ARG ARG THR THR ALA PRO ARG ALA SEQRES 2 B 507 LYS LYS PRO SER ALA LYS ARG ALA PRO THR GLN PRO SER SEQRES 3 B 507 ARG THR ARG ALA HIS ALA GLU SER CYS GLY PRO GLN ARG SEQRES 4 B 507 GLY ALA ARG SER ARG ARG ALA GLU ARG ASP GLY ASP THR SEQRES 5 B 507 THR GLU LYS PRO ARG ALA PRO GLY PRO ARG VAL HIS PRO SEQRES 6 B 507 ALA ARG ALA THR GLU LEU THR LYS ASP ALA GLN PRO SER SEQRES 7 B 507 ALA MET ASP ALA ALA GLY ALA THR ALA ARG PRO ALA VAL SEQRES 8 B 507 ARG VAL PRO GLN GLN GLN ALA ILE LEU ASP PRO GLU LEU SEQRES 9 B 507 PRO ALA VAL ARG GLU PRO GLN PRO PRO ALA ASP PRO GLU SEQRES 10 B 507 ALA ARG LYS VAL VAL ARG GLY PRO SER HIS ARG ARG GLY SEQRES 11 B 507 ALA ARG SER THR GLY GLN PRO ARG ALA PRO ARG GLY SER SEQRES 12 B 507 ARG LYS GLU PRO ASP LYS LEU LYS LYS VAL LEU ASP LYS SEQRES 13 B 507 LEU ARG LEU LYS ARG LYS ASP ILE SER GLU ALA ALA GLU SEQRES 14 B 507 THR VAL ASN LYS VAL VAL GLU ARG LEU LEU ARG ARG MET SEQRES 15 B 507 GLN LYS ARG GLU SER GLU PHE LYS GLY VAL GLU GLN LEU SEQRES 16 B 507 ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER ALA SEQRES 17 B 507 PRO ASN GLU PHE ASP VAL MET PHE LYS LEU GLU VAL PRO SEQRES 18 B 507 ARG ILE GLU LEU GLN GLU TYR TYR GLU THR GLY ALA PHE SEQRES 19 B 507 TYR LEU VAL LYS PHE LYS ARG ILE PRO ARG GLY ASN PRO SEQRES 20 B 507 LEU SER HIS PHE LEU GLU GLY GLU VAL LEU SER ALA THR SEQRES 21 B 507 LYS MET LEU SER LYS PHE ARG LYS ILE ILE LYS GLU GLU SEQRES 22 B 507 VAL LYS GLU ILE LYS ASP ILE ASP VAL SER VAL GLU LYS SEQRES 23 B 507 GLU LYS PRO GLY SER PRO ALA VAL THR LEU LEU ILE ARG SEQRES 24 B 507 ASN PRO GLU GLU ILE SER VAL ASP ILE ILE LEU ALA LEU SEQRES 25 B 507 GLU SER LYS GLY SER TRP PRO ILE SER THR LYS GLU GLY SEQRES 26 B 507 LEU PRO ILE GLN GLY TRP LEU GLY THR LYS VAL ARG THR SEQRES 27 B 507 ASN LEU ARG ARG GLU PRO PHE TYR LEU VAL PRO LYS ASN SEQRES 28 B 507 ALA LYS ASP GLY ASN SER PHE GLN GLY GLU THR TRP ARG SEQRES 29 B 507 LEU SER PHE SER HIS THR GLU LYS TYR ILE LEU ASN ASN SEQRES 30 B 507 HIS GLY ILE GLU LYS THR CYS CYS GLU SER SER GLY ALA SEQRES 31 B 507 LYS CYS CYS ARG LYS GLU CYS LEU LYS LEU MET LYS TYR SEQRES 32 B 507 LEU LEU GLU GLN LEU LYS LYS GLU PHE GLN GLU LEU ASP SEQRES 33 B 507 ALA PHE CYS SER TYR HIS VAL LYS THR ALA ILE PHE HIS SEQRES 34 B 507 MET TRP THR GLN ASP PRO GLN ASP SER GLN TRP ASP PRO SEQRES 35 B 507 ARG ASN LEU SER SER CYS PHE ASP LYS LEU LEU ALA PHE SEQRES 36 B 507 PHE LEU GLU CYS LEU ARG THR GLU LYS LEU ASP HIS TYR SEQRES 37 B 507 PHE ILE PRO LYS PHE ASN LEU PHE SER GLN GLU LEU ILE SEQRES 38 B 507 ASP ARG LYS SER LYS GLU PHE LEU SER LYS LYS ILE GLU SEQRES 39 B 507 TYR GLU ARG ASN ASN GLY PHE PRO ILE PHE ASP LYS LEU HET ZN A 601 1 HET 1SY A 602 45 HET ZN B 601 1 HET 1SY B 602 45 HETNAM ZN ZINC ION HETNAM 1SY CGAMP HETSYN 1SY 2',3' CGAMP; C-GMP-AMP; C[G(2',5')PA(3',5')P] FORMUL 3 ZN 2(ZN 2+) FORMUL 4 1SY 2(C20 H24 N10 O13 P2) FORMUL 7 HOH *(H2 O) HELIX 1 AA1 LEU A 150 ASP A 155 1 6 HELIX 2 AA2 ARG A 158 MET A 182 1 25 HELIX 3 AA3 TYR A 201 LYS A 205 5 5 HELIX 4 AA4 LEU A 248 HIS A 250 5 3 HELIX 5 AA5 SER A 258 VAL A 274 1 17 HELIX 6 AA6 PRO A 319 LYS A 323 5 5 HELIX 7 AA7 GLY A 333 ARG A 342 1 10 HELIX 8 AA8 PHE A 367 ASN A 377 1 11 HELIX 9 AA9 CYS A 393 LYS A 410 1 18 HELIX 10 AB1 PHE A 412 ASP A 416 5 5 HELIX 11 AB2 SER A 420 ASP A 434 1 15 HELIX 12 AB3 ASP A 441 ARG A 443 5 3 HELIX 13 AB4 ASN A 444 THR A 462 1 19 HELIX 14 AB5 ASP A 482 ASN A 499 1 18 HELIX 15 AB6 PHE A 501 ASP A 505 5 5 HELIX 16 AB7 LEU B 150 ARG B 158 1 9 HELIX 17 AB8 THR B 170 ARG B 181 1 12 HELIX 18 AB9 ASN B 246 HIS B 250 5 5 HELIX 19 AC1 SER B 258 VAL B 274 1 17 HELIX 20 AC2 PRO B 319 LYS B 323 5 5 HELIX 21 AC3 GLY B 333 ARG B 342 1 10 HELIX 22 AC4 PHE B 367 ASN B 377 1 11 HELIX 23 AC5 CYS B 393 LYS B 410 1 18 HELIX 24 AC6 CYS B 419 ASP B 434 1 16 HELIX 25 AC7 GLN B 436 ARG B 443 5 8 HELIX 26 AC8 ASN B 444 THR B 462 1 19 HELIX 27 AC9 ASP B 482 ASN B 499 1 18 HELIX 28 AD1 PHE B 501 ASP B 505 5 5 SHEET 1 AA1 7 VAL A 192 GLN A 194 0 SHEET 2 AA1 7 PHE A 212 GLU A 219 -1 O LYS A 217 N GLU A 193 SHEET 3 AA1 7 SER A 305 SER A 314 1 O ILE A 309 N VAL A 214 SHEET 4 AA1 7 PHE A 345 VAL A 348 -1 O PHE A 345 N SER A 314 SHEET 5 AA1 7 TRP A 363 SER A 366 -1 O ARG A 364 N VAL A 348 SHEET 6 AA1 7 PHE A 234 PHE A 239 -1 N TYR A 235 O TRP A 363 SHEET 7 AA1 7 ILE A 223 GLU A 227 -1 N GLU A 224 O LYS A 238 SHEET 1 AA2 5 VAL A 192 GLN A 194 0 SHEET 2 AA2 5 PHE A 212 GLU A 219 -1 O LYS A 217 N GLU A 193 SHEET 3 AA2 5 SER A 305 SER A 314 1 O ILE A 309 N VAL A 214 SHEET 4 AA2 5 THR A 295 LEU A 297 -1 N LEU A 296 O VAL A 306 SHEET 5 AA2 5 SER A 283 VAL A 284 -1 N SER A 283 O LEU A 297 SHEET 1 AA3 2 LEU A 252 GLU A 253 0 SHEET 2 AA3 2 VAL A 256 LEU A 257 -1 O VAL A 256 N GLU A 253 SHEET 1 AA4 2 ASP A 466 HIS A 467 0 SHEET 2 AA4 2 ILE A 470 ASN A 474 -1 O PHE A 473 N HIS A 467 SHEET 1 AA5 7 GLU B 193 GLN B 194 0 SHEET 2 AA5 7 PHE B 212 GLU B 219 -1 O LYS B 217 N GLU B 193 SHEET 3 AA5 7 ILE B 304 SER B 314 1 O ASP B 307 N VAL B 214 SHEET 4 AA5 7 PHE B 345 VAL B 348 -1 O LEU B 347 N LEU B 312 SHEET 5 AA5 7 THR B 362 SER B 366 -1 O SER B 366 N TYR B 346 SHEET 6 AA5 7 PHE B 234 PHE B 239 -1 N TYR B 235 O TRP B 363 SHEET 7 AA5 7 ILE B 223 GLU B 227 -1 N GLN B 226 O LEU B 236 SHEET 1 AA6 5 GLU B 193 GLN B 194 0 SHEET 2 AA6 5 PHE B 212 GLU B 219 -1 O LYS B 217 N GLU B 193 SHEET 3 AA6 5 ILE B 304 SER B 314 1 O ASP B 307 N VAL B 214 SHEET 4 AA6 5 LEU B 296 ILE B 298 -1 N LEU B 296 O VAL B 306 SHEET 5 AA6 5 VAL B 282 VAL B 284 -1 N SER B 283 O LEU B 297 SHEET 1 AA7 2 LEU B 252 GLU B 253 0 SHEET 2 AA7 2 VAL B 256 LEU B 257 -1 O VAL B 256 N GLU B 253 LINK NE2 HIS A 378 ZN ZN A 601 1555 1555 2.11 LINK SG CYS A 384 ZN ZN A 601 1555 1555 2.28 LINK SG CYS A 385 ZN ZN A 601 1555 1555 2.29 LINK SG CYS A 392 ZN ZN A 601 1555 1555 2.29 LINK NE2 HIS B 378 ZN ZN B 601 1555 1555 1.98 LINK SG CYS B 384 ZN ZN B 601 1555 1555 2.29 LINK SG CYS B 385 ZN ZN B 601 1555 1555 2.23 LINK SG CYS B 392 ZN ZN B 601 1555 1555 2.30 SITE 1 AC1 4 HIS A 378 CYS A 384 CYS A 385 CYS A 392 SITE 1 AC2 10 ILE A 206 MET A 215 ASP A 307 ILE A 309 SITE 2 AC2 10 LYS A 350 ARG A 364 SER A 366 SER A 368 SITE 3 AC2 10 GLU A 371 HOH A 701 SITE 1 AC3 4 HIS B 378 CYS B 384 CYS B 385 CYS B 392 SITE 1 AC4 13 GLU B 211 ASP B 213 MET B 215 PRO B 292 SITE 2 AC4 13 ASP B 307 ILE B 309 VAL B 348 LYS B 350 SITE 3 AC4 13 ARG B 364 SER B 366 SER B 368 CYS B 419 SITE 4 AC4 13 TYR B 421 CRYST1 47.645 109.812 75.637 90.00 94.13 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020989 0.000000 0.001515 0.00000 SCALE2 0.000000 0.009106 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013255 0.00000