HEADER VIRAL PROTEIN 14-APR-20 7BWJ TITLE CRYSTAL STRUCTURE OF SARS-COV-2 ANTIBODY WITH RBD COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPIKE PROTEIN S1; COMPND 3 CHAIN: E; COMPND 4 SYNONYM: S GLYCOPROTEIN,E2,PEPLOMER PROTEIN,SARS-COV-2 RECEPTOR COMPND 5 BINDING DOMAIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ANTIBODY LIGHT CHAIN; COMPND 9 CHAIN: L; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: ANTIBODY HEAVY CHAIN; COMPND 13 CHAIN: H; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEVERE ACUTE RESPIRATORY SYNDROME CORONAVIRUS SOURCE 3 2; SOURCE 4 ORGANISM_COMMON: 2019-NCOV; SOURCE 5 ORGANISM_TAXID: 2697049; SOURCE 6 GENE: S, 2; SOURCE 7 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 17 ORGANISM_TAXID: 9606; SOURCE 18 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 20 EXPRESSION_SYSTEM_CELL_LINE: HEK 293F KEYWDS SPIKE, RECEPTOR BINDING DOMAIN, ANTIBODY, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,J.GE REVDAT 7 23-OCT-24 7BWJ 1 REMARK REVDAT 6 29-NOV-23 7BWJ 1 REMARK REVDAT 5 10-MAR-21 7BWJ 1 COMPND REVDAT 4 19-AUG-20 7BWJ 1 JRNL HETSYN REVDAT 3 29-JUL-20 7BWJ 1 COMPND REMARK HETNAM LINK REVDAT 3 2 1 SITE REVDAT 2 10-JUN-20 7BWJ 1 JRNL REVDAT 1 03-JUN-20 7BWJ 0 JRNL AUTH B.JU,Q.ZHANG,J.GE,R.WANG,J.SUN,X.GE,J.YU,S.SHAN,B.ZHOU, JRNL AUTH 2 S.SONG,X.TANG,J.YU,J.LAN,J.YUAN,H.WANG,J.ZHAO,S.ZHANG, JRNL AUTH 3 Y.WANG,X.SHI,L.LIU,J.ZHAO,X.WANG,Z.ZHANG,L.ZHANG JRNL TITL HUMAN NEUTRALIZING ANTIBODIES ELICITED BY SARS-COV-2 JRNL TITL 2 INFECTION. JRNL REF NATURE V. 584 115 2020 JRNL REFN ESSN 1476-4687 JRNL PMID 32454513 JRNL DOI 10.1038/S41586-020-2380-Z REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15_3459 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17227 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.5520 - 5.1779 1.00 2844 167 0.1958 0.2282 REMARK 3 2 5.1779 - 4.1102 1.00 2735 137 0.1770 0.2117 REMARK 3 3 4.1102 - 3.5907 1.00 2706 149 0.2225 0.3086 REMARK 3 4 3.5907 - 3.2624 1.00 2702 140 0.2665 0.3426 REMARK 3 5 3.2624 - 3.0286 1.00 2692 124 0.2926 0.3122 REMARK 3 6 3.0286 - 2.8500 1.00 2693 138 0.3085 0.3564 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.350 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 74.43 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN E REMARK 3 ORIGIN FOR THE GROUP (A): -14.6078 -10.7198 26.0189 REMARK 3 T TENSOR REMARK 3 T11: 0.6012 T22: 0.5442 REMARK 3 T33: 0.4807 T12: -0.0226 REMARK 3 T13: -0.0630 T23: -0.0730 REMARK 3 L TENSOR REMARK 3 L11: 4.4139 L22: 3.1673 REMARK 3 L33: 3.9483 L12: -1.7553 REMARK 3 L13: -0.8434 L23: 1.2799 REMARK 3 S TENSOR REMARK 3 S11: -0.0511 S12: -0.3447 S13: 0.5835 REMARK 3 S21: 0.0299 S22: 0.1659 S23: -0.1605 REMARK 3 S31: -0.4043 S32: -0.4204 S33: -0.1171 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN H AND RESID 1:127 REMARK 3 ORIGIN FOR THE GROUP (A): -2.9089 -36.3378 2.5810 REMARK 3 T TENSOR REMARK 3 T11: 0.4005 T22: 0.3633 REMARK 3 T33: 0.3294 T12: -0.0333 REMARK 3 T13: 0.0389 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 1.5057 L22: 7.0403 REMARK 3 L33: 5.1064 L12: -1.0071 REMARK 3 L13: 1.2202 L23: 4.9332 REMARK 3 S TENSOR REMARK 3 S11: 0.1140 S12: 0.1074 S13: -0.0539 REMARK 3 S21: -0.0294 S22: -0.1416 S23: 0.1562 REMARK 3 S31: 0.0640 S32: -0.0643 S33: 0.0011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN H AND RESID 128:229 REMARK 3 ORIGIN FOR THE GROUP (A): 10.4997 -65.4811 3.3385 REMARK 3 T TENSOR REMARK 3 T11: 0.4472 T22: 0.4094 REMARK 3 T33: 0.3575 T12: 0.0052 REMARK 3 T13: 0.0412 T23: -0.0423 REMARK 3 L TENSOR REMARK 3 L11: 5.2474 L22: 5.5830 REMARK 3 L33: 5.4962 L12: -3.3618 REMARK 3 L13: 3.0682 L23: -1.8055 REMARK 3 S TENSOR REMARK 3 S11: -0.0621 S12: -0.0188 S13: -0.3633 REMARK 3 S21: 0.2368 S22: -0.0001 S23: 0.3955 REMARK 3 S31: 0.3544 S32: 0.3758 S33: 0.1475 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN L AND RESID 1:111 REMARK 3 ORIGIN FOR THE GROUP (A): 17.8495 -30.3947 3.9050 REMARK 3 T TENSOR REMARK 3 T11: 0.4035 T22: 0.3811 REMARK 3 T33: 0.5330 T12: -0.0143 REMARK 3 T13: -0.0167 T23: -0.1528 REMARK 3 L TENSOR REMARK 3 L11: 7.2270 L22: 7.1464 REMARK 3 L33: 4.2686 L12: -2.2501 REMARK 3 L13: -1.1861 L23: -1.2236 REMARK 3 S TENSOR REMARK 3 S11: 0.1104 S12: -0.0164 S13: 0.3056 REMARK 3 S21: -0.0523 S22: 0.1381 S23: -0.7529 REMARK 3 S31: 0.1283 S32: 0.5379 S33: -0.2829 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN L AND RESID 112:213 REMARK 3 ORIGIN FOR THE GROUP (A): 22.0553 -66.9226 -7.5328 REMARK 3 T TENSOR REMARK 3 T11: 0.4401 T22: 0.4978 REMARK 3 T33: 0.3615 T12: 0.1051 REMARK 3 T13: 0.0295 T23: 0.0030 REMARK 3 L TENSOR REMARK 3 L11: 10.0477 L22: 4.1521 REMARK 3 L33: 4.3475 L12: 3.3395 REMARK 3 L13: 0.9416 L23: -0.7815 REMARK 3 S TENSOR REMARK 3 S11: 0.0959 S12: 0.9387 S13: 0.1234 REMARK 3 S21: -0.5349 S22: -0.2050 S23: 0.0312 REMARK 3 S31: 0.0167 S32: -0.0247 S33: 0.1126 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BWJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300016612. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-20 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9796 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS EIGER X 16M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17230 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 90.150 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.90 REMARK 200 R MERGE (I) : 0.15400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.92 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.45200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 6M0J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM FORMATE DIHYDRATE, 0.1M REMARK 280 SODIUM ACETATE TRIHYDRATE, PH 4.0, 18% PEG 5000 MME, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.11500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.17500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.07500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.17500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.11500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 45.07500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG E 319 REMARK 465 VAL E 320 REMARK 465 GLN E 321 REMARK 465 PRO E 322 REMARK 465 THR E 323 REMARK 465 GLU E 324 REMARK 465 SER E 325 REMARK 465 ILE E 326 REMARK 465 VAL E 327 REMARK 465 ARG E 328 REMARK 465 PHE E 329 REMARK 465 PRO E 330 REMARK 465 ASN E 331 REMARK 465 ILE E 332 REMARK 465 PRO E 527 REMARK 465 LYS E 528 REMARK 465 LYS E 529 REMARK 465 HIS E 530 REMARK 465 HIS E 531 REMARK 465 HIS E 532 REMARK 465 HIS E 533 REMARK 465 HIS E 534 REMARK 465 HIS E 535 REMARK 465 GLU L 214 REMARK 465 CYS L 215 REMARK 465 SER L 216 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA E 372 -11.38 67.59 REMARK 500 PHE E 377 74.68 -153.90 REMARK 500 ASN E 422 -48.74 -137.91 REMARK 500 TYR E 423 116.35 -161.17 REMARK 500 ASN E 481 16.94 56.70 REMARK 500 HIS E 519 71.09 -69.35 REMARK 500 ASP L 28 -93.38 -116.24 REMARK 500 TYR L 34 66.84 -103.29 REMARK 500 VAL L 53 -65.49 81.54 REMARK 500 SER L 65 147.66 -171.09 REMARK 500 LEU L 99 74.33 41.21 REMARK 500 ASP L 155 -114.38 49.39 REMARK 500 THR L 167 152.52 -49.72 REMARK 500 HIS L 201 108.00 -162.95 REMARK 500 SER H 15 -7.22 80.42 REMARK 500 TYR H 33 163.00 64.82 REMARK 500 ILE H 49 -64.60 -101.69 REMARK 500 ALA H 109 141.11 -39.63 REMARK 500 ARG H 112 -90.12 -121.78 REMARK 500 ASP H 158 71.53 55.50 REMARK 500 PHE H 160 145.31 -173.77 REMARK 500 ASN H 169 46.09 35.37 REMARK 500 REMARK 500 REMARK: NULL DBREF 7BWJ E 319 529 UNP P0DTC2 SPIKE_SARS2 319 529 DBREF 7BWJ L 1 216 PDB 7BWJ 7BWJ 1 216 DBREF 7BWJ H 1 229 PDB 7BWJ 7BWJ 1 229 SEQADV 7BWJ HIS E 530 UNP P0DTC2 EXPRESSION TAG SEQADV 7BWJ HIS E 531 UNP P0DTC2 EXPRESSION TAG SEQADV 7BWJ HIS E 532 UNP P0DTC2 EXPRESSION TAG SEQADV 7BWJ HIS E 533 UNP P0DTC2 EXPRESSION TAG SEQADV 7BWJ HIS E 534 UNP P0DTC2 EXPRESSION TAG SEQADV 7BWJ HIS E 535 UNP P0DTC2 EXPRESSION TAG SEQRES 1 E 217 ARG VAL GLN PRO THR GLU SER ILE VAL ARG PHE PRO ASN SEQRES 2 E 217 ILE THR ASN LEU CYS PRO PHE GLY GLU VAL PHE ASN ALA SEQRES 3 E 217 THR ARG PHE ALA SER VAL TYR ALA TRP ASN ARG LYS ARG SEQRES 4 E 217 ILE SER ASN CYS VAL ALA ASP TYR SER VAL LEU TYR ASN SEQRES 5 E 217 SER ALA SER PHE SER THR PHE LYS CYS TYR GLY VAL SER SEQRES 6 E 217 PRO THR LYS LEU ASN ASP LEU CYS PHE THR ASN VAL TYR SEQRES 7 E 217 ALA ASP SER PHE VAL ILE ARG GLY ASP GLU VAL ARG GLN SEQRES 8 E 217 ILE ALA PRO GLY GLN THR GLY LYS ILE ALA ASP TYR ASN SEQRES 9 E 217 TYR LYS LEU PRO ASP ASP PHE THR GLY CYS VAL ILE ALA SEQRES 10 E 217 TRP ASN SER ASN ASN LEU ASP SER LYS VAL GLY GLY ASN SEQRES 11 E 217 TYR ASN TYR LEU TYR ARG LEU PHE ARG LYS SER ASN LEU SEQRES 12 E 217 LYS PRO PHE GLU ARG ASP ILE SER THR GLU ILE TYR GLN SEQRES 13 E 217 ALA GLY SER THR PRO CYS ASN GLY VAL GLU GLY PHE ASN SEQRES 14 E 217 CYS TYR PHE PRO LEU GLN SER TYR GLY PHE GLN PRO THR SEQRES 15 E 217 ASN GLY VAL GLY TYR GLN PRO TYR ARG VAL VAL VAL LEU SEQRES 16 E 217 SER PHE GLU LEU LEU HIS ALA PRO ALA THR VAL CYS GLY SEQRES 17 E 217 PRO LYS LYS HIS HIS HIS HIS HIS HIS SEQRES 1 L 216 GLN SER ALA LEU THR GLN PRO PRO SER ALA SER GLY SER SEQRES 2 L 216 PRO GLY GLN SER VAL THR ILE SER CYS THR GLY THR SER SEQRES 3 L 216 SER ASP VAL GLY GLY TYR ASN TYR VAL SER TRP TYR GLN SEQRES 4 L 216 GLN HIS PRO GLY LYS ALA PRO LYS LEU MET ILE TYR GLU SEQRES 5 L 216 VAL SER LYS ARG PRO SER GLY VAL PRO ASP ARG PHE SER SEQRES 6 L 216 GLY SER LYS SER GLY ASN THR ALA SER LEU THR VAL SER SEQRES 7 L 216 GLY LEU GLN ALA GLU ASP GLU ALA ASP TYR TYR CYS SER SEQRES 8 L 216 SER TYR ALA GLY SER ASN ASN LEU VAL PHE GLY GLY GLY SEQRES 9 L 216 THR LYS LEU THR VAL LEU GLY GLN PRO LYS ALA ALA PRO SEQRES 10 L 216 SER VAL THR LEU PHE PRO PRO SER SER GLU GLU LEU GLN SEQRES 11 L 216 ALA ASN LYS ALA THR LEU VAL CYS LEU ILE SER ASP PHE SEQRES 12 L 216 TYR PRO GLY ALA VAL THR VAL ALA TRP LYS ALA ASP SER SEQRES 13 L 216 SER PRO VAL LYS ALA GLY VAL GLU THR THR THR PRO SER SEQRES 14 L 216 LYS GLN SER ASN ASN LYS TYR ALA ALA SER SER TYR LEU SEQRES 15 L 216 SER LEU THR PRO GLU GLN TRP LYS SER HIS ARG SER TYR SEQRES 16 L 216 SER CYS GLN VAL THR HIS GLU GLY SER THR VAL GLU LYS SEQRES 17 L 216 THR VAL ALA PRO THR GLU CYS SER SEQRES 1 H 229 GLN VAL GLN LEU GLN GLU SER GLY PRO GLY LEU VAL LYS SEQRES 2 H 229 PRO SER GLU THR LEU SER LEU THR CYS THR VAL SER GLY SEQRES 3 H 229 TYR SER ILE SER SER GLY TYR TYR TRP GLY TRP ILE ARG SEQRES 4 H 229 GLN PRO PRO GLY LYS GLY LEU GLU TRP ILE GLY SER ILE SEQRES 5 H 229 TYR HIS SER GLY SER THR TYR TYR ASN PRO SER LEU LYS SEQRES 6 H 229 THR ARG VAL THR ILE SER VAL ASP THR SER LYS ASN GLN SEQRES 7 H 229 PHE SER LEU LYS LEU SER SER VAL THR ALA ALA ASP THR SEQRES 8 H 229 ALA VAL TYR TYR CYS ALA ARG ALA VAL VAL GLY ILE VAL SEQRES 9 H 229 VAL VAL PRO ALA ALA GLY ARG ARG ALA PHE ASP ILE TRP SEQRES 10 H 229 GLY GLN GLY THR MET VAL THR VAL SER SER ALA SER THR SEQRES 11 H 229 LYS GLY PRO SER VAL PHE PRO LEU ALA PRO SER SER LYS SEQRES 12 H 229 SER THR SER GLY GLY THR ALA ALA LEU GLY CYS LEU VAL SEQRES 13 H 229 LYS ASP TYR PHE PRO GLU PRO VAL THR VAL SER TRP ASN SEQRES 14 H 229 SER GLY ALA LEU THR SER GLY VAL HIS THR PHE PRO ALA SEQRES 15 H 229 VAL LEU GLN SER SER GLY LEU TYR SER LEU SER SER VAL SEQRES 16 H 229 VAL THR VAL PRO SER SER SER LEU GLY THR GLN THR TYR SEQRES 17 H 229 ILE CYS ASN VAL ASN HIS LYS PRO SER ASN THR LYS VAL SEQRES 18 H 229 ASP LYS LYS VAL GLU PRO LYS SER HET NAG E 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 4 NAG C8 H15 N O6 HELIX 1 AA1 PRO E 337 ASN E 343 1 7 HELIX 2 AA2 SER E 349 TRP E 353 5 5 HELIX 3 AA3 ASP E 364 ASN E 370 1 7 HELIX 4 AA4 SER E 383 ASN E 388 1 6 HELIX 5 AA5 ASP E 405 ILE E 410 5 6 HELIX 6 AA6 GLY E 416 ASN E 422 1 7 HELIX 7 AA7 SER E 438 SER E 443 1 6 HELIX 8 AA8 GLY E 502 TYR E 505 5 4 HELIX 9 AA9 GLN L 81 GLU L 85 5 5 HELIX 10 AB1 SER L 125 ALA L 131 1 7 HELIX 11 AB2 THR L 185 HIS L 192 1 8 HELIX 12 AB3 SER H 28 GLY H 32 5 5 HELIX 13 AB4 PRO H 62 LYS H 65 5 4 HELIX 14 AB5 THR H 87 THR H 91 5 5 HELIX 15 AB6 SER H 170 ALA H 172 5 3 SHEET 1 AA1 5 ASN E 354 ILE E 358 0 SHEET 2 AA1 5 ASN E 394 ARG E 403 -1 O VAL E 395 N ILE E 358 SHEET 3 AA1 5 PRO E 507 GLU E 516 -1 O TYR E 508 N ILE E 402 SHEET 4 AA1 5 GLY E 431 ASN E 437 -1 N ILE E 434 O VAL E 511 SHEET 5 AA1 5 THR E 376 CYS E 379 -1 N LYS E 378 O VAL E 433 SHEET 1 AA2 2 CYS E 361 VAL E 362 0 SHEET 2 AA2 2 VAL E 524 CYS E 525 1 O CYS E 525 N CYS E 361 SHEET 1 AA3 2 LEU E 452 ARG E 454 0 SHEET 2 AA3 2 LEU E 492 SER E 494 -1 O GLN E 493 N TYR E 453 SHEET 1 AA4 2 TYR E 473 GLN E 474 0 SHEET 2 AA4 2 CYS E 488 TYR E 489 -1 O TYR E 489 N TYR E 473 SHEET 1 AA5 5 SER L 9 SER L 11 0 SHEET 2 AA5 5 THR L 105 THR L 108 1 O LYS L 106 N ALA L 10 SHEET 3 AA5 5 ASP L 87 ALA L 94 -1 N TYR L 88 O THR L 105 SHEET 4 AA5 5 VAL L 35 GLN L 40 -1 N TYR L 38 O TYR L 89 SHEET 5 AA5 5 LYS L 47 ILE L 50 -1 O MET L 49 N TRP L 37 SHEET 1 AA6 4 SER L 9 SER L 11 0 SHEET 2 AA6 4 THR L 105 THR L 108 1 O LYS L 106 N ALA L 10 SHEET 3 AA6 4 ASP L 87 ALA L 94 -1 N TYR L 88 O THR L 105 SHEET 4 AA6 4 ASN L 97 PHE L 101 -1 O VAL L 100 N SER L 92 SHEET 1 AA7 3 VAL L 18 THR L 23 0 SHEET 2 AA7 3 THR L 72 VAL L 77 -1 O VAL L 77 N VAL L 18 SHEET 3 AA7 3 PHE L 64 SER L 69 -1 N SER L 65 O THR L 76 SHEET 1 AA8 4 SER L 118 PHE L 122 0 SHEET 2 AA8 4 ALA L 134 PHE L 143 -1 O VAL L 137 N PHE L 122 SHEET 3 AA8 4 TYR L 176 LEU L 184 -1 O LEU L 184 N ALA L 134 SHEET 4 AA8 4 VAL L 163 THR L 165 -1 N GLU L 164 O TYR L 181 SHEET 1 AA9 4 SER L 118 PHE L 122 0 SHEET 2 AA9 4 ALA L 134 PHE L 143 -1 O VAL L 137 N PHE L 122 SHEET 3 AA9 4 TYR L 176 LEU L 184 -1 O LEU L 184 N ALA L 134 SHEET 4 AA9 4 SER L 169 LYS L 170 -1 N SER L 169 O ALA L 177 SHEET 1 AB1 4 SER L 157 VAL L 159 0 SHEET 2 AB1 4 THR L 149 ALA L 154 -1 N ALA L 154 O SER L 157 SHEET 3 AB1 4 TYR L 195 HIS L 201 -1 O GLN L 198 N ALA L 151 SHEET 4 AB1 4 SER L 204 VAL L 210 -1 O VAL L 206 N VAL L 199 SHEET 1 AB2 4 GLN H 3 SER H 7 0 SHEET 2 AB2 4 LEU H 18 SER H 25 -1 O THR H 21 N SER H 7 SHEET 3 AB2 4 GLN H 78 LEU H 83 -1 O LEU H 81 N LEU H 20 SHEET 4 AB2 4 VAL H 68 ASP H 73 -1 N THR H 69 O LYS H 82 SHEET 1 AB3 6 LEU H 11 VAL H 12 0 SHEET 2 AB3 6 THR H 121 VAL H 125 1 O THR H 124 N VAL H 12 SHEET 3 AB3 6 ALA H 92 ALA H 99 -1 N TYR H 94 O THR H 121 SHEET 4 AB3 6 TRP H 35 GLN H 40 -1 N ILE H 38 O TYR H 95 SHEET 5 AB3 6 GLU H 47 ILE H 52 -1 O ILE H 49 N TRP H 37 SHEET 6 AB3 6 THR H 58 TYR H 60 -1 O TYR H 59 N SER H 51 SHEET 1 AB4 4 LEU H 11 VAL H 12 0 SHEET 2 AB4 4 THR H 121 VAL H 125 1 O THR H 124 N VAL H 12 SHEET 3 AB4 4 ALA H 92 ALA H 99 -1 N TYR H 94 O THR H 121 SHEET 4 AB4 4 PHE H 114 TRP H 117 -1 O ASP H 115 N ARG H 98 SHEET 1 AB5 4 SER H 134 LEU H 138 0 SHEET 2 AB5 4 THR H 149 TYR H 159 -1 O LEU H 155 N PHE H 136 SHEET 3 AB5 4 TYR H 190 PRO H 199 -1 O VAL H 198 N ALA H 150 SHEET 4 AB5 4 VAL H 177 THR H 179 -1 N HIS H 178 O VAL H 195 SHEET 1 AB6 4 THR H 145 SER H 146 0 SHEET 2 AB6 4 THR H 149 TYR H 159 -1 O THR H 149 N SER H 146 SHEET 3 AB6 4 TYR H 190 PRO H 199 -1 O VAL H 198 N ALA H 150 SHEET 4 AB6 4 VAL H 183 LEU H 184 -1 N VAL H 183 O SER H 191 SHEET 1 AB7 3 THR H 165 TRP H 168 0 SHEET 2 AB7 3 TYR H 208 HIS H 214 -1 O ASN H 211 N SER H 167 SHEET 3 AB7 3 THR H 219 VAL H 225 -1 O VAL H 221 N VAL H 212 SSBOND 1 CYS E 336 CYS E 361 1555 1555 2.04 SSBOND 2 CYS E 379 CYS E 432 1555 1555 2.05 SSBOND 3 CYS E 391 CYS E 525 1555 1555 2.05 SSBOND 4 CYS E 480 CYS E 488 1555 1555 2.06 SSBOND 5 CYS L 22 CYS L 90 1555 1555 2.04 SSBOND 6 CYS L 138 CYS L 197 1555 1555 2.06 SSBOND 7 CYS H 22 CYS H 96 1555 1555 2.10 SSBOND 8 CYS H 154 CYS H 210 1555 1555 2.05 LINK ND2 ASN E 343 C1 NAG E 601 1555 1555 1.42 CISPEP 1 TYR L 144 PRO L 145 0 -5.95 CISPEP 2 PHE H 160 PRO H 161 0 -8.28 CISPEP 3 GLU H 162 PRO H 163 0 3.41 CRYST1 70.230 90.150 112.350 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014239 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011093 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008901 0.00000