HEADER TRANSFERASE 19-APR-20 7BXF TITLE MVCA-LPG2149 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MVCA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LPG2149; COMPND 7 CHAIN: C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. SOURCE 3 PHILADELPHIA 1; SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1; SOURCE 6 GENE: LPG2148; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. SOURCE 11 PHILADELPHIA 1; SOURCE 12 ORGANISM_TAXID: 272624; SOURCE 13 STRAIN: PHILADELPHIA 1; SOURCE 14 GENE: LPG2149; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITINATION, DEUBIQUITINATION, MAVC, MVCA, LPG2149, UBE2N, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.GAO REVDAT 3 29-NOV-23 7BXF 1 REMARK REVDAT 2 09-SEP-20 7BXF 1 JRNL LINK REVDAT 1 20-MAY-20 7BXF 0 JRNL AUTH Y.WANG,Q.ZHAN,X.WANG,P.LI,S.LIU,G.GAO,P.GAO JRNL TITL INSIGHTS INTO CATALYSIS AND REGULATION OF NON-CANONICAL JRNL TITL 2 UBIQUITINATION AND DEUBIQUITINATION BY BACTERIAL DEAMIDASE JRNL TITL 3 EFFECTORS. JRNL REF NAT COMMUN V. 11 2751 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32488130 JRNL DOI 10.1038/S41467-020-16587-W REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.82 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 15702 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.250 REMARK 3 FREE R VALUE TEST SET COUNT : 824 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.8200 - 4.8958 0.95 2531 119 0.1867 0.2031 REMARK 3 2 4.8958 - 3.8908 0.96 2486 143 0.1837 0.1961 REMARK 3 3 3.8908 - 3.4004 0.97 2511 147 0.2136 0.2848 REMARK 3 4 3.4004 - 3.0901 0.96 2482 130 0.2510 0.3306 REMARK 3 5 3.0901 - 2.8690 0.97 2459 155 0.2548 0.3267 REMARK 3 6 2.8690 - 2.7000 0.94 2409 130 0.2727 0.3159 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.110 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 49.62 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 13 THROUGH 82 ) REMARK 3 ORIGIN FOR THE GROUP (A): 51.4391 4.6595 24.8758 REMARK 3 T TENSOR REMARK 3 T11: 0.2682 T22: 0.1301 REMARK 3 T33: 0.2042 T12: 0.0670 REMARK 3 T13: 0.0114 T23: -0.0193 REMARK 3 L TENSOR REMARK 3 L11: 2.5039 L22: 0.2182 REMARK 3 L33: 2.3298 L12: 0.5248 REMARK 3 L13: -0.2757 L23: -0.1160 REMARK 3 S TENSOR REMARK 3 S11: 0.0890 S12: -0.0536 S13: 0.2613 REMARK 3 S21: 0.2283 S22: -0.0132 S23: 0.1070 REMARK 3 S31: -0.5061 S32: -0.1377 S33: -0.0448 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 83 THROUGH 187 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.8499 -5.6471 10.8020 REMARK 3 T TENSOR REMARK 3 T11: 0.3306 T22: 0.3933 REMARK 3 T33: 0.3489 T12: -0.0593 REMARK 3 T13: -0.0598 T23: -0.0539 REMARK 3 L TENSOR REMARK 3 L11: 3.3905 L22: 0.7000 REMARK 3 L33: 1.3411 L12: -1.4113 REMARK 3 L13: 1.9165 L23: -0.5916 REMARK 3 S TENSOR REMARK 3 S11: 0.0851 S12: 0.3738 S13: 0.0771 REMARK 3 S21: -0.2830 S22: -0.1438 S23: 0.0399 REMARK 3 S31: 0.2444 S32: -0.0479 S33: 0.1054 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 188 THROUGH 316 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.7933 -0.1099 20.2971 REMARK 3 T TENSOR REMARK 3 T11: 0.2493 T22: 0.3261 REMARK 3 T33: 0.3979 T12: 0.0330 REMARK 3 T13: 0.0082 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 3.1011 L22: 0.4107 REMARK 3 L33: 1.6669 L12: -0.2383 REMARK 3 L13: 1.7418 L23: -0.3489 REMARK 3 S TENSOR REMARK 3 S11: 0.0176 S12: -0.1591 S13: -0.0272 REMARK 3 S21: -0.0966 S22: 0.0082 S23: 0.3197 REMARK 3 S31: -0.0046 S32: -0.4084 S33: -0.0612 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 317 THROUGH 395 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.9338 -1.7154 26.7106 REMARK 3 T TENSOR REMARK 3 T11: 0.2648 T22: 0.1203 REMARK 3 T33: 0.1091 T12: 0.0530 REMARK 3 T13: -0.0099 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 2.4481 L22: 0.9559 REMARK 3 L33: 1.2383 L12: 0.7129 REMARK 3 L13: 0.3415 L23: 0.1840 REMARK 3 S TENSOR REMARK 3 S11: -0.0495 S12: -0.2120 S13: 0.0329 REMARK 3 S21: -0.1896 S22: 0.0081 S23: -0.0050 REMARK 3 S31: -0.0313 S32: 0.0083 S33: 0.0333 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 11 THROUGH 43 ) REMARK 3 ORIGIN FOR THE GROUP (A): 48.6731 1.4938 10.0488 REMARK 3 T TENSOR REMARK 3 T11: 0.2212 T22: 0.2285 REMARK 3 T33: 0.2477 T12: 0.0819 REMARK 3 T13: 0.0265 T23: -0.0154 REMARK 3 L TENSOR REMARK 3 L11: 1.2790 L22: 3.4216 REMARK 3 L33: 4.0096 L12: 0.2433 REMARK 3 L13: 0.2230 L23: -1.2349 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: -0.1347 S13: 0.1820 REMARK 3 S21: -0.4520 S22: 0.4251 S23: 0.4825 REMARK 3 S31: -0.1685 S32: -0.6892 S33: -0.1500 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 44 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 46.7515 3.1165 -5.6653 REMARK 3 T TENSOR REMARK 3 T11: 0.6385 T22: 0.3839 REMARK 3 T33: 0.3539 T12: -0.0235 REMARK 3 T13: -0.1431 T23: 0.1243 REMARK 3 L TENSOR REMARK 3 L11: 3.4017 L22: 3.1358 REMARK 3 L33: 0.0853 L12: -3.2518 REMARK 3 L13: -0.2972 L23: 0.2433 REMARK 3 S TENSOR REMARK 3 S11: -0.1121 S12: 0.7092 S13: 0.3421 REMARK 3 S21: -0.9971 S22: 0.2035 S23: 0.8180 REMARK 3 S31: -0.5259 S32: 0.1195 S33: -0.0876 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 55 THROUGH 114 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.2241 -0.9123 2.7360 REMARK 3 T TENSOR REMARK 3 T11: 0.2192 T22: 0.2154 REMARK 3 T33: 0.2425 T12: 0.0189 REMARK 3 T13: 0.0543 T23: -0.0080 REMARK 3 L TENSOR REMARK 3 L11: 3.5272 L22: 3.8514 REMARK 3 L33: 4.4309 L12: -0.2149 REMARK 3 L13: 1.3544 L23: -0.1053 REMARK 3 S TENSOR REMARK 3 S11: 0.1649 S12: 0.2002 S13: -0.0637 REMARK 3 S21: -0.4004 S22: 0.0618 S23: 0.3241 REMARK 3 S31: -0.0646 S32: -0.1471 S33: -0.0629 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BXF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300014988. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15703 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5SUJ,5DPO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2% TACSIMATE, PH 4.0, 0.1 M 426 SODIUM REMARK 280 ACECATE, PH 4.6, 16% PEG3350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.49900 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.61450 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.49900 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 40.61450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -35.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 VAL A 3 REMARK 465 ARG A 4 REMARK 465 GLY A 5 REMARK 465 ILE A 6 REMARK 465 ASN A 7 REMARK 465 MET A 8 REMARK 465 THR A 9 REMARK 465 LYS A 10 REMARK 465 ILE A 11 REMARK 465 LYS A 12 REMARK 465 PRO A 209 REMARK 465 PHE A 210 REMARK 465 VAL A 211 REMARK 465 LEU A 212 REMARK 465 GLU A 213 REMARK 465 ARG A 322 REMARK 465 GLU A 323 REMARK 465 ALA A 324 REMARK 465 PHE A 325 REMARK 465 PHE A 326 REMARK 465 CYS A 327 REMARK 465 ALA A 328 REMARK 465 HIS A 329 REMARK 465 LEU A 330 REMARK 465 LYS A 396 REMARK 465 PRO A 397 REMARK 465 GLU A 398 REMARK 465 SER A 399 REMARK 465 SER A 400 REMARK 465 SER C 8 REMARK 465 GLY C 9 REMARK 465 THR C 10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 13 CG CD1 CD2 REMARK 470 GLU A 153 CG CD OE1 OE2 REMARK 470 ASP A 200 CG OD1 OD2 REMARK 470 CYS A 207 SG REMARK 470 ASP A 208 CG OD1 OD2 REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 GLU A 256 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 79 88.13 -64.20 REMARK 500 PRO A 127 -6.52 -59.77 REMARK 500 ASP A 142 75.74 -116.70 REMARK 500 GLU A 216 -36.70 -134.17 REMARK 500 ASP A 394 61.39 62.41 REMARK 500 HIS C 65 60.39 -104.94 REMARK 500 HIS C 112 37.59 71.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PR C 201 PR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 280 OD1 REMARK 620 2 ASP A 280 OD2 49.1 REMARK 620 3 GLU C 51 OE1 54.0 78.8 REMARK 620 4 GLU C 54 OE2 52.1 80.4 4.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PR C 202 PR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 283 OE1 REMARK 620 2 GLU A 283 OE2 49.9 REMARK 620 3 GLU C 54 OE1 33.5 52.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PR A 502 PR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 368 OE1 REMARK 620 2 ASP A 372 OD1 122.3 REMARK 620 3 ASP A 372 OD2 107.0 40.2 REMARK 620 4 HOH A 632 O 155.4 77.5 97.6 REMARK 620 5 ASP C 84 OD1 141.4 75.4 62.5 52.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 PR A 501 PR REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 372 OD1 REMARK 620 2 GLU A 375 OE1 85.6 REMARK 620 3 GLU A 375 OE2 96.0 46.9 REMARK 620 4 HOH A 624 O 151.4 66.0 63.0 REMARK 620 5 HOH A 632 O 92.4 115.4 69.4 97.3 REMARK 620 6 GLU C 64 OE1 96.5 42.7 4.5 61.0 73.8 REMARK 620 7 GLU C 64 OE2 97.7 40.9 6.8 59.3 75.9 2.4 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PR A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PR A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PR C 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PR C 202 DBREF 7BXF A 1 400 UNP Q5ZTL3 Q5ZTL3_LEGPH 1 400 DBREF 7BXF C 9 114 UNP Q5ZTL2 Q5ZTL2_LEGPH 9 114 SEQADV 7BXF SER A 0 UNP Q5ZTL3 EXPRESSION TAG SEQADV 7BXF SER C 8 UNP Q5ZTL2 EXPRESSION TAG SEQRES 1 A 401 SER MET ILE VAL ARG GLY ILE ASN MET THR LYS ILE LYS SEQRES 2 A 401 LEU GLU SER PRO GLY PHE MET VAL HIS LYS LYS LEU LYS SEQRES 3 A 401 SER MET SER GLN SER TYR GLY VAL MET MET THR GLY VAL SEQRES 4 A 401 PRO ALA GLU VAL LEU GLY GLN MET GLN ALA GLU ARG SER SEQRES 5 A 401 ILE PRO SER ILE ASN LYS THR GLY ASN LEU LYS GLN GLN SEQRES 6 A 401 ILE ALA LYS GLU VAL SER LYS VAL CYS HIS MET MET THR SEQRES 7 A 401 GLU PRO THR GLN SER CYS GLY GLN ALA SER ASN ASP VAL SEQRES 8 A 401 CYS GLU LEU LEU LEU GLY LYS ILE GLU ALA GLU LYS PHE SEQRES 9 A 401 HIS PHE THR LYS TYR GLU ALA LEU SER ALA ASP GLY ASP SEQRES 10 A 401 ASN LEU LYS ASN VAL LEU GLU ASN THR ALA PRO SER SER SEQRES 11 A 401 THR ASN LEU LEU ILE ARG PHE GLU ILE ASP ARG GLU ASP SEQRES 12 A 401 PRO PRO ILE VAL LEU VAL LYS THR LYS ASN GLU ASN PHE SEQRES 13 A 401 ASN PRO GLU THR ALA VAL LYS ASN LYS ILE TYR LEU LEU SEQRES 14 A 401 GLU ASN LYS LEU TYR PHE ILE ASP LYS MET GLY ASN LEU SEQRES 15 A 401 PHE ASN LEU GLY PRO GLY LYS LYS LYS CYS THR GLN LEU SEQRES 16 A 401 PHE ASN ALA ILE GLY ASP SER ALA GLU TYR SER LEU CYS SEQRES 17 A 401 ASP PRO PHE VAL LEU GLU GLU PRO GLU LYS PRO GLU ASP SEQRES 18 A 401 PHE ALA ILE SER GLU ILE VAL ASP ILE PHE ASN GLU GLN SEQRES 19 A 401 LYS GLU ARG PHE ASP PHE TRP ILE GLY SER HIS SER PHE SEQRES 20 A 401 THR ILE TYR ILE PRO GLN THR LEU GLY GLU SER PRO ARG SEQRES 21 A 401 GLN PHE TYR PRO TYR GLN ALA TYR PHE GLY SER HIS THR SEQRES 22 A 401 LEU GLN ASP TRP PHE VAL SER ASP LYS ASP GLU TYR LEU SEQRES 23 A 401 SER ARG ILE GLY ILE ASP LYS TYR ILE GLU LYS LEU ALA SEQRES 24 A 401 VAL LEU GLY LYS THR THR ASN THR LYS GLU ARG SER ASP SEQRES 25 A 401 ILE TYR ALA GLU PHE PHE SER LYS ARG GLY ARG GLU ALA SEQRES 26 A 401 PHE PHE CYS ALA HIS LEU ASN GLU LYS ARG GLN PRO LEU SEQRES 27 A 401 ARG VAL LYS PHE LYS ILE THR GLU ILE ASN PRO GLU LEU SEQRES 28 A 401 ALA LEU LYS ASN LEU GLN GLU THR GLN GLU PHE ILE ASP SEQRES 29 A 401 THR HIS PRO GLY GLU ASN PRO SER ASP LYS VAL GLU ASN SEQRES 30 A 401 TYR ARG ASN ARG ALA LYS LEU ALA MET THR GLU HIS LEU SEQRES 31 A 401 GLU SER LEU LEU ASP ILE LYS PRO GLU SER SER SEQRES 1 C 107 SER GLY THR PHE PHE LYS ASP TYR GLN LYS LYS ASN VAL SEQRES 2 C 107 MET ARG LEU LEU GLN ASP SER LEU GLU LYS ILE ILE ASN SEQRES 3 C 107 GLU TRP LEU LYS THR ASP ASP GLU SER HIS THR LYS LEU SEQRES 4 C 107 LYS SER LEU GLN GLU LEU SER GLU MET ASP ILE ASN ALA SEQRES 5 C 107 THR SER PHE ALA GLU HIS SER PRO LEU PRO ASP PHE VAL SEQRES 6 C 107 THR ARG LEU TRP LEU ASP PRO HIS LYS ALA LEU ASP ALA SEQRES 7 C 107 MET ASP LYS ASN ILE SER LYS ASN GLU ILE ARG LYS LEU SEQRES 8 C 107 ILE LYS GLU THR ALA ARG GLU ILE GLU LEU VAL PHE THR SEQRES 9 C 107 HIS GLN LYS HET PR A 501 1 HET PR A 502 1 HET PR C 201 1 HET PR C 202 1 HETNAM PR PRASEODYMIUM ION FORMUL 3 PR 4(PR 3+) FORMUL 7 HOH *62(H2 O) HELIX 1 AA1 SER A 15 GLY A 32 1 18 HELIX 2 AA2 VAL A 33 GLY A 37 5 5 HELIX 3 AA3 PRO A 39 ILE A 52 1 14 HELIX 4 AA4 ASN A 60 HIS A 74 1 15 HELIX 5 AA5 SER A 82 THR A 106 1 25 HELIX 6 AA6 GLY A 115 ASN A 124 1 10 HELIX 7 AA7 LYS A 151 PHE A 155 5 5 HELIX 8 AA8 GLY A 187 ASN A 196 1 10 HELIX 9 AA9 LYS A 217 GLU A 232 1 16 HELIX 10 AB1 GLN A 233 PHE A 237 5 5 HELIX 11 AB2 THR A 272 SER A 279 1 8 HELIX 12 AB3 ASP A 280 ARG A 287 1 8 HELIX 13 AB4 GLY A 289 THR A 303 1 15 HELIX 14 AB5 ASN A 305 PHE A 317 1 13 HELIX 15 AB6 ASN A 347 ASP A 363 1 17 HELIX 16 AB7 ASN A 369 LEU A 393 1 25 HELIX 17 AB8 PHE C 12 LYS C 37 1 26 HELIX 18 AB9 HIS C 43 GLU C 54 1 12 HELIX 19 AC1 PRO C 69 ASP C 78 1 10 HELIX 20 AC2 ASP C 78 LEU C 83 1 6 HELIX 21 AC3 SER C 91 THR C 111 1 21 SHEET 1 AA1 5 GLU A 109 ALA A 110 0 SHEET 2 AA1 5 LEU A 337 GLU A 345 -1 O PHE A 341 N GLU A 109 SHEET 3 AA1 5 LEU A 132 GLU A 141 -1 N ARG A 135 O LYS A 342 SHEET 4 AA1 5 TRP A 240 ILE A 250 -1 O ILE A 248 N ILE A 134 SHEET 5 AA1 5 TYR A 262 TYR A 264 -1 O TYR A 264 N THR A 247 SHEET 1 AA2 5 LEU A 181 ASN A 183 0 SHEET 2 AA2 5 LEU A 172 ILE A 175 -1 N PHE A 174 O PHE A 182 SHEET 3 AA2 5 LYS A 164 LEU A 167 -1 N TYR A 166 O TYR A 173 SHEET 4 AA2 5 VAL A 146 LYS A 149 1 N VAL A 148 O ILE A 165 SHEET 5 AA2 5 GLU A 203 SER A 205 -1 O TYR A 204 N LEU A 147 LINK OD1 ASP A 280 PR PR C 201 1555 1556 2.64 LINK OD2 ASP A 280 PR PR C 201 1555 1556 2.65 LINK OE1 GLU A 283 PR PR C 202 1555 1556 2.29 LINK OE2 GLU A 283 PR PR C 202 1555 1556 2.81 LINK OE1 GLU A 368 PR PR A 502 1555 1555 2.50 LINK OD1 ASP A 372 PR PR A 501 1555 1555 2.67 LINK OD1 ASP A 372 PR PR A 502 1555 1555 3.40 LINK OD2 ASP A 372 PR PR A 502 1555 1555 2.57 LINK OE1 GLU A 375 PR PR A 501 1555 1555 2.20 LINK OE2 GLU A 375 PR PR A 501 1555 1555 3.02 LINK PR PR A 501 O HOH A 624 1555 1555 3.14 LINK PR PR A 501 O HOH A 632 1555 1555 3.13 LINK PR PR A 501 OE1 GLU C 64 1554 1555 2.22 LINK PR PR A 501 OE2 GLU C 64 1554 1555 3.47 LINK PR PR A 502 O HOH A 632 1555 1555 3.32 LINK PR PR A 502 OD1 ASP C 84 2656 1555 3.47 LINK OE1 GLU C 51 PR PR C 201 1555 1555 3.31 LINK OE2 GLU C 54 PR PR C 201 1555 1555 2.32 LINK OE1 GLU C 54 PR PR C 202 1555 1555 2.44 SITE 1 AC1 3 ASP A 372 GLU A 375 GLU C 64 SITE 1 AC2 3 GLU A 368 ASP A 372 ASP C 84 SITE 1 AC3 3 ASP A 280 GLU C 51 GLU C 54 SITE 1 AC4 2 GLU A 283 GLU C 54 CRYST1 136.998 81.229 54.253 90.00 95.09 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007299 0.000000 0.000650 0.00000 SCALE2 0.000000 0.012311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018505 0.00000