HEADER TRANSFERASE 19-APR-20 7BXG TITLE MAVC-UBE2N-UB COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAVC; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: UBIQUITIN-CONJUGATING ENZYME E2 N; COMPND 7 CHAIN: B; COMPND 8 SYNONYM: BENDLESS-LIKE UBIQUITIN-CONJUGATING ENZYME,E2 UBIQUITIN- COMPND 9 CONJUGATING ENZYME N,UBC13,UBCH13,UBIQUITIN CARRIER PROTEIN N, COMPND 10 UBIQUITIN-PROTEIN LIGASE N; COMPND 11 EC: 2.3.2.23; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: POLYUBIQUITIN-C; COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. SOURCE 3 PHILADELPHIA 1; SOURCE 4 ORGANISM_TAXID: 272624; SOURCE 5 STRAIN: PHILADELPHIA 1; SOURCE 6 GENE: LPG2147; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: UBE2N, BLU; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 MOL_ID: 3; SOURCE 17 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 18 ORGANISM_COMMON: HUMAN; SOURCE 19 ORGANISM_TAXID: 9606; SOURCE 20 GENE: UBC; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS UBIQUITINATION, DEUBIQUITINATION, MAVC, MVCA, LPG2149, UBE2N, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.GAO,Y.WANG REVDAT 3 29-NOV-23 7BXG 1 REMARK REVDAT 2 09-SEP-20 7BXG 1 JRNL REVDAT 1 20-MAY-20 7BXG 0 JRNL AUTH Y.WANG,Q.ZHAN,X.WANG,P.LI,S.LIU,G.GAO,P.GAO JRNL TITL INSIGHTS INTO CATALYSIS AND REGULATION OF NON-CANONICAL JRNL TITL 2 UBIQUITINATION AND DEUBIQUITINATION BY BACTERIAL DEAMIDASE JRNL TITL 3 EFFECTORS. JRNL REF NAT COMMUN V. 11 2751 2020 JRNL REFN ESSN 2041-1723 JRNL PMID 32488130 JRNL DOI 10.1038/S41467-020-16587-W REMARK 2 REMARK 2 RESOLUTION. 2.71 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.13_2998 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.71 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.11 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 3 NUMBER OF REFLECTIONS : 36277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.1100 - 7.8318 0.85 1250 133 0.1311 0.1587 REMARK 3 2 7.8318 - 6.2479 0.79 1142 118 0.1454 0.1799 REMARK 3 3 6.2479 - 5.4674 0.76 1107 125 0.1506 0.1607 REMARK 3 4 5.4674 - 4.9717 0.86 1248 146 0.1398 0.1778 REMARK 3 5 4.9717 - 4.6178 0.92 1323 134 0.1408 0.1936 REMARK 3 6 4.6178 - 4.3470 0.95 1401 153 0.1452 0.1908 REMARK 3 7 4.3470 - 4.1303 0.96 1393 144 0.1517 0.1878 REMARK 3 8 4.1303 - 3.9512 0.96 1398 144 0.1652 0.2318 REMARK 3 9 3.9512 - 3.7996 0.99 1466 154 0.1847 0.2430 REMARK 3 10 3.7996 - 3.6689 1.00 1416 144 0.1885 0.2630 REMARK 3 11 3.6689 - 3.5545 1.00 1520 158 0.1988 0.2761 REMARK 3 12 3.5545 - 3.4532 1.00 1423 152 0.2238 0.2726 REMARK 3 13 3.4532 - 3.3625 1.00 1467 164 0.2213 0.2239 REMARK 3 14 3.3625 - 3.2806 0.99 1427 157 0.2220 0.2913 REMARK 3 15 3.2806 - 3.2062 0.99 1444 156 0.2402 0.3135 REMARK 3 16 3.2062 - 3.1381 0.97 1415 141 0.2455 0.3001 REMARK 3 17 3.1381 - 3.0754 0.96 1403 139 0.2622 0.3267 REMARK 3 18 3.0754 - 3.0175 0.92 1364 150 0.2688 0.3291 REMARK 3 19 3.0175 - 2.9637 0.92 1330 148 0.2680 0.3409 REMARK 3 20 2.9637 - 2.9135 0.89 1315 147 0.2662 0.3853 REMARK 3 21 2.9135 - 2.8666 0.85 1227 131 0.2765 0.3579 REMARK 3 22 2.8666 - 2.8226 0.83 1223 141 0.2835 0.3440 REMARK 3 23 2.8226 - 2.7811 0.78 1071 124 0.2935 0.3556 REMARK 3 24 2.7811 - 2.7420 0.69 1041 102 0.2859 0.3225 REMARK 3 25 2.7420 - 2.7050 0.64 957 101 0.3017 0.3695 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.800 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 8 THROUGH 64 ) REMARK 3 ORIGIN FOR THE GROUP (A): -31.7413 38.1526 21.9791 REMARK 3 T TENSOR REMARK 3 T11: 0.1772 T22: 0.1463 REMARK 3 T33: 0.2162 T12: -0.0342 REMARK 3 T13: -0.0215 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 0.1522 L22: 0.0485 REMARK 3 L33: 0.0317 L12: -0.0189 REMARK 3 L13: -0.0797 L23: 0.0306 REMARK 3 S TENSOR REMARK 3 S11: 0.0192 S12: -0.0642 S13: -0.3279 REMARK 3 S21: 0.0931 S22: 0.0061 S23: 0.0978 REMARK 3 S31: 0.0757 S32: -0.0338 S33: 0.0188 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 173 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.3900 46.5246 8.3021 REMARK 3 T TENSOR REMARK 3 T11: 0.0766 T22: 0.1816 REMARK 3 T33: 0.1677 T12: 0.0349 REMARK 3 T13: 0.0002 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 0.4865 L22: 0.1497 REMARK 3 L33: 0.3129 L12: 0.1341 REMARK 3 L13: 0.0378 L23: -0.0518 REMARK 3 S TENSOR REMARK 3 S11: 0.1606 S12: 0.1200 S13: -0.1835 REMARK 3 S21: 0.2593 S22: -0.0804 S23: -0.1118 REMARK 3 S31: -0.1115 S32: 0.1669 S33: 0.5270 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 174 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8989 50.0091 -3.6830 REMARK 3 T TENSOR REMARK 3 T11: 0.1539 T22: 0.3065 REMARK 3 T33: 0.2082 T12: 0.0531 REMARK 3 T13: -0.0221 T23: -0.0457 REMARK 3 L TENSOR REMARK 3 L11: 0.3834 L22: 0.1254 REMARK 3 L33: 0.1792 L12: -0.0590 REMARK 3 L13: 0.0725 L23: 0.0751 REMARK 3 S TENSOR REMARK 3 S11: 0.0422 S12: 0.1755 S13: -0.0584 REMARK 3 S21: -0.0444 S22: -0.0520 S23: 0.0254 REMARK 3 S31: -0.0441 S32: 0.1239 S33: 0.0061 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 384 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.3495 33.2111 10.6159 REMARK 3 T TENSOR REMARK 3 T11: 0.1960 T22: 0.0759 REMARK 3 T33: 0.2479 T12: 0.0293 REMARK 3 T13: -0.0152 T23: -0.0843 REMARK 3 L TENSOR REMARK 3 L11: 0.7092 L22: 0.4000 REMARK 3 L33: 0.3526 L12: -0.0631 REMARK 3 L13: 0.3779 L23: 0.2445 REMARK 3 S TENSOR REMARK 3 S11: 0.0145 S12: 0.1408 S13: -0.9243 REMARK 3 S21: 0.0881 S22: -0.1734 S23: -0.0179 REMARK 3 S31: -0.0048 S32: -0.0002 S33: -0.0415 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 3 THROUGH 17 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.1877 64.5363 -18.3069 REMARK 3 T TENSOR REMARK 3 T11: 0.2039 T22: 0.4636 REMARK 3 T33: -0.3039 T12: -0.0146 REMARK 3 T13: -0.2567 T23: 0.3462 REMARK 3 L TENSOR REMARK 3 L11: -0.0010 L22: 0.0060 REMARK 3 L33: 0.0008 L12: -0.0062 REMARK 3 L13: 0.0088 L23: 0.0088 REMARK 3 S TENSOR REMARK 3 S11: -0.0281 S12: 0.1472 S13: 0.1001 REMARK 3 S21: -0.0783 S22: 0.0015 S23: -0.0681 REMARK 3 S31: 0.0911 S32: 0.0765 S33: 0.0190 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 18 THROUGH 86 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.2622 60.0561 -9.1349 REMARK 3 T TENSOR REMARK 3 T11: 0.1470 T22: 0.1525 REMARK 3 T33: -0.1693 T12: 0.0103 REMARK 3 T13: -0.1340 T23: -0.1079 REMARK 3 L TENSOR REMARK 3 L11: 0.0542 L22: 0.0944 REMARK 3 L33: 0.1022 L12: -0.0588 REMARK 3 L13: 0.0037 L23: 0.0179 REMARK 3 S TENSOR REMARK 3 S11: -0.2012 S12: 0.0859 S13: 0.4235 REMARK 3 S21: 0.0033 S22: 0.2101 S23: 0.5353 REMARK 3 S31: 0.1408 S32: 0.2602 S33: -0.0597 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 87 THROUGH 100 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.0032 52.6303 -2.5865 REMARK 3 T TENSOR REMARK 3 T11: 0.3342 T22: 0.4017 REMARK 3 T33: 0.2656 T12: 0.1071 REMARK 3 T13: -0.0219 T23: 0.0895 REMARK 3 L TENSOR REMARK 3 L11: 0.0075 L22: 0.0120 REMARK 3 L33: 0.0011 L12: -0.0187 REMARK 3 L13: 0.0032 L23: -0.0202 REMARK 3 S TENSOR REMARK 3 S11: 0.0085 S12: 0.0570 S13: -0.1646 REMARK 3 S21: 0.0940 S22: 0.0425 S23: -0.2169 REMARK 3 S31: -0.0617 S32: 0.1063 S33: 0.0000 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 101 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): -28.9256 52.2951 -10.8656 REMARK 3 T TENSOR REMARK 3 T11: 0.1780 T22: 0.3148 REMARK 3 T33: -0.0297 T12: 0.1368 REMARK 3 T13: 0.0325 T23: -0.2130 REMARK 3 L TENSOR REMARK 3 L11: 0.0362 L22: 0.0337 REMARK 3 L33: 0.1132 L12: -0.0383 REMARK 3 L13: -0.0588 L23: 0.0628 REMARK 3 S TENSOR REMARK 3 S11: 0.0428 S12: -0.0379 S13: 0.0856 REMARK 3 S21: 0.0313 S22: -0.2477 S23: -0.0202 REMARK 3 S31: 0.1659 S32: -0.0449 S33: -0.0736 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 114 THROUGH 132 ) REMARK 3 ORIGIN FOR THE GROUP (A): -40.0416 45.7993 3.8567 REMARK 3 T TENSOR REMARK 3 T11: 0.5792 T22: 0.2055 REMARK 3 T33: -0.6688 T12: -0.0357 REMARK 3 T13: 0.0562 T23: 0.1505 REMARK 3 L TENSOR REMARK 3 L11: 0.0053 L22: 0.0080 REMARK 3 L33: 0.0491 L12: -0.0124 REMARK 3 L13: -0.0043 L23: 0.0116 REMARK 3 S TENSOR REMARK 3 S11: 0.0926 S12: -0.1102 S13: 0.1458 REMARK 3 S21: 0.1703 S22: 0.0500 S23: 0.0096 REMARK 3 S31: 0.0016 S32: 0.1205 S33: 0.0069 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 133 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.2924 52.1603 -8.1259 REMARK 3 T TENSOR REMARK 3 T11: 0.3161 T22: 0.1859 REMARK 3 T33: 0.2563 T12: 0.0099 REMARK 3 T13: -0.0209 T23: -0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.0189 L22: 0.0434 REMARK 3 L33: 0.0343 L12: -0.0365 REMARK 3 L13: -0.0098 L23: -0.0142 REMARK 3 S TENSOR REMARK 3 S11: -0.2580 S12: 0.1600 S13: 0.0936 REMARK 3 S21: 0.0264 S22: -0.3931 S23: 0.3266 REMARK 3 S31: 0.1210 S32: -0.3259 S33: -0.0076 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 1 THROUGH 6 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.6906 52.4553 27.8768 REMARK 3 T TENSOR REMARK 3 T11: 0.4897 T22: 0.4057 REMARK 3 T33: 0.3978 T12: 0.0149 REMARK 3 T13: -0.1945 T23: -0.0395 REMARK 3 L TENSOR REMARK 3 L11: 0.0057 L22: 0.0035 REMARK 3 L33: 0.0025 L12: -0.0084 REMARK 3 L13: 0.0081 L23: -0.0003 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: -0.0918 S13: -0.0190 REMARK 3 S21: 0.1029 S22: 0.1347 S23: 0.0335 REMARK 3 S31: -0.0813 S32: 0.0032 S33: -0.0001 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 7 THROUGH 34 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9107 49.8259 20.9794 REMARK 3 T TENSOR REMARK 3 T11: 0.3483 T22: 0.3193 REMARK 3 T33: 0.3043 T12: -0.0196 REMARK 3 T13: -0.1557 T23: -0.0298 REMARK 3 L TENSOR REMARK 3 L11: 0.0473 L22: 0.0441 REMARK 3 L33: 0.0321 L12: 0.0156 REMARK 3 L13: -0.0250 L23: 0.0257 REMARK 3 S TENSOR REMARK 3 S11: 0.0190 S12: -0.2998 S13: -0.0666 REMARK 3 S21: -0.0830 S22: 0.0671 S23: -0.1804 REMARK 3 S31: -0.1871 S32: 0.2444 S33: 0.1731 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 35 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.9724 53.4169 15.0702 REMARK 3 T TENSOR REMARK 3 T11: 0.3082 T22: 0.2450 REMARK 3 T33: 0.3204 T12: 0.0132 REMARK 3 T13: -0.1216 T23: -0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.0913 L22: 0.0507 REMARK 3 L33: 0.1349 L12: 0.0515 REMARK 3 L13: -0.0930 L23: -0.0808 REMARK 3 S TENSOR REMARK 3 S11: 0.0314 S12: 0.0337 S13: 0.0186 REMARK 3 S21: 0.0119 S22: 0.0250 S23: 0.1358 REMARK 3 S31: -0.1912 S32: 0.0392 S33: 0.0470 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 56 THROUGH 65 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1208 61.2787 24.8026 REMARK 3 T TENSOR REMARK 3 T11: 0.5953 T22: 0.3482 REMARK 3 T33: 0.4726 T12: -0.0655 REMARK 3 T13: -0.0918 T23: -0.0509 REMARK 3 L TENSOR REMARK 3 L11: 0.0019 L22: 0.0041 REMARK 3 L33: 0.0037 L12: 0.0009 REMARK 3 L13: -0.0052 L23: 0.0051 REMARK 3 S TENSOR REMARK 3 S11: 0.1036 S12: -0.0760 S13: 0.0346 REMARK 3 S21: 0.0795 S22: 0.1484 S23: -0.0407 REMARK 3 S31: 0.0152 S32: 0.0354 S33: 0.0000 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 66 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.0743 47.7122 17.7591 REMARK 3 T TENSOR REMARK 3 T11: 0.2683 T22: 0.2173 REMARK 3 T33: 0.2982 T12: -0.0161 REMARK 3 T13: -0.1237 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.0183 L22: 0.0077 REMARK 3 L33: 0.0063 L12: -0.0116 REMARK 3 L13: 0.0076 L23: -0.0119 REMARK 3 S TENSOR REMARK 3 S11: -0.0149 S12: -0.0518 S13: -0.0846 REMARK 3 S21: 0.0860 S22: -0.1352 S23: 0.0294 REMARK 3 S31: -0.0202 S32: 0.0199 S33: -0.0126 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BXG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-APR-20. REMARK 100 THE DEPOSITION ID IS D_1300015089. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-OCT-19 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36277 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.90 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.75 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 5TSC,5ZQ3,5EYA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM MALONATE, PH 7.0, 12% REMARK 280 PEG3350, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.91467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.45733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.18600 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 9.72867 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.64333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 LEU A 6 REMARK 465 GLU A 7 REMARK 465 PRO A 385 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER D 0 REMARK 465 GLY D 75 REMARK 465 GLY D 76 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 CYS A 74 SG REMARK 470 LYS B 94 CG CD CE NZ REMARK 470 GLN D 40 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS B 92 CD GLN D 40 1.21 REMARK 500 NZ LYS B 92 OE1 GLN D 40 1.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 128 56.98 -97.46 REMARK 500 TYR A 192 -159.56 -149.12 REMARK 500 SER A 257 -68.19 -141.49 REMARK 500 PRO A 306 160.14 -47.03 REMARK 500 GLU B 18 78.98 -118.31 REMARK 500 ASN D 60 66.15 61.04 REMARK 500 REMARK 500 REMARK: NULL DBREF 7BXG A 1 385 UNP Q5ZTL4 Q5ZTL4_LEGPH 1 385 DBREF 7BXG B 1 152 UNP P61088 UBE2N_HUMAN 1 152 DBREF 7BXG D 1 76 UNP P0CG48 UBC_HUMAN 1 76 SEQADV 7BXG SER A 0 UNP Q5ZTL4 EXPRESSION TAG SEQADV 7BXG SER B 0 UNP P61088 EXPRESSION TAG SEQADV 7BXG SER D 0 UNP P0CG48 EXPRESSION TAG SEQRES 1 A 386 SER MET THR THR SER LYS LEU GLU LYS THR GLY LEU HIS SEQRES 2 A 386 VAL HIS GLU LYS ILE LYS HIS MET VAL LYS ASN TYR GLY SEQRES 3 A 386 THR MET ILE THR GLY ILE PRO ALA GLU ILE LEU GLY GLN SEQRES 4 A 386 ASN GLU ALA GLU ILE SER VAL GLY TYR VAL LYS LYS MET SEQRES 5 A 386 GLY ASN MET LYS GLU ASN ILE ALA GLU VAL VAL ARG LYS SEQRES 6 A 386 SER GLU MET THR GLN PRO THR ASN SER CYS GLY LYS ALA SEQRES 7 A 386 SER ASN GLU VAL CYS ASP LEU LEU LEU GLY THR GLU GLY SEQRES 8 A 386 ALA SER GLU PHE GLU LYS SER SER TYR GLN VAL LEU SER SEQRES 9 A 386 GLY ASP GLY SER ASN LEU LYS GLY SER LEU PRO ASN LYS SEQRES 10 A 386 ASN LEU LEU VAL ARG VAL GLU MET ASP ARG PHE ASN ALA SEQRES 11 A 386 PRO GLN LYS TYR GLN LYS ILE LYS ARG GLU GLU PHE ASN SEQRES 12 A 386 PRO GLU THR ALA GLU LYS ASN LYS ILE TYR LEU LEU GLU SEQRES 13 A 386 ASP GLN LEU VAL TYR LEU ASP ILE PHE GLY LYS VAL ILE SEQRES 14 A 386 ASP LEU GLY GLN THR SER ASP THR CYS HIS ARG LEU PHE SEQRES 15 A 386 ASN ALA ILE THR THR PRO PHE TYR GLN ASN TYR ILE LEU SEQRES 16 A 386 TYR ASP GLU TYR ILE ASP PRO GLU GLU SER ALA GLU GLU SEQRES 17 A 386 ALA ALA MET PHE GLU MET GLY GLU ILE VAL LYS ALA LYS SEQRES 18 A 386 MET LYS ASN ILE ASP CYS TRP THR ALA THR HIS SER PHE SEQRES 19 A 386 THR ILE PHE VAL PRO GLU SER ASP SER GLU ASP THR ARG SEQRES 20 A 386 THR LEU TYR PRO TYR GLN ALA TYR TRP THR SER HIS THR SEQRES 21 A 386 LEU GLN GLN TRP PHE SER GLY ASP LYS ASP GLU LYS LEU SEQRES 22 A 386 SER ARG LEU GLY ILE ASP GLY TYR ILE GLU LYS LEU ALA SEQRES 23 A 386 LEU LEU GLY THR THR THR ASP SER LYS ILE ARG SER SER SEQRES 24 A 386 ILE TYR GLY GLU LEU PHE SER PRO PRO GLY LYS GLU HIS SEQRES 25 A 386 VAL PHE CYS THR GLY MET ASN GLU LYS PHE SER PRO LEU SEQRES 26 A 386 ARG VAL LYS PHE LYS VAL THR GLU VAL ASN PRO GLU ILE SEQRES 27 A 386 ALA LEU GLN ASN LEU GLU GLU VAL GLN GLU PHE ILE ASP SEQRES 28 A 386 THR ASN TYR PRO GLY GLU ASN ALA LYS ASP GLN CYS GLU SEQRES 29 A 386 LEU TYR LYS ILE LYS ALA GLN GLU ALA MET THR LYS GLN SEQRES 30 A 386 LEU GLU MET ARG LEU LEU ILE GLU PRO SEQRES 1 B 153 SER MET ALA GLY LEU PRO ARG ARG ILE ILE LYS GLU THR SEQRES 2 B 153 GLN ARG LEU LEU ALA GLU PRO VAL PRO GLY ILE LYS ALA SEQRES 3 B 153 GLU PRO ASP GLU SER ASN ALA ARG TYR PHE HIS VAL VAL SEQRES 4 B 153 ILE ALA GLY PRO GLN ASP SER PRO PHE GLU GLY GLY THR SEQRES 5 B 153 PHE LYS LEU GLU LEU PHE LEU PRO GLU GLU TYR PRO MET SEQRES 6 B 153 ALA ALA PRO LYS VAL ARG PHE MET THR LYS ILE TYR HIS SEQRES 7 B 153 PRO ASN VAL ASP LYS LEU GLY ARG ILE CYS LEU ASP ILE SEQRES 8 B 153 LEU LYS ASP LYS TRP SER PRO ALA LEU GLN ILE ARG THR SEQRES 9 B 153 VAL LEU LEU SER ILE GLN ALA LEU LEU SER ALA PRO ASN SEQRES 10 B 153 PRO ASP ASP PRO LEU ALA ASN ASP VAL ALA GLU GLN TRP SEQRES 11 B 153 LYS THR ASN GLU ALA GLN ALA ILE GLU THR ALA ARG ALA SEQRES 12 B 153 TRP THR ARG LEU TYR ALA MET ASN ASN ILE SEQRES 1 D 77 SER MET GLN ILE PHE VAL LYS THR LEU THR GLY LYS THR SEQRES 2 D 77 ILE THR LEU GLU VAL GLU PRO SER ASP THR ILE GLU ASN SEQRES 3 D 77 VAL LYS ALA LYS ILE GLN ASP LYS GLU GLY ILE PRO PRO SEQRES 4 D 77 ASP GLN GLN ARG LEU ILE PHE ALA GLY LYS GLN LEU GLU SEQRES 5 D 77 ASP GLY ARG THR LEU SER ASP TYR ASN ILE GLN LYS GLU SEQRES 6 D 77 SER THR LEU HIS LEU VAL LEU ARG LEU ARG GLY GLY FORMUL 4 HOH *75(H2 O) HELIX 1 AA1 THR A 9 GLY A 25 1 17 HELIX 2 AA2 THR A 26 GLY A 30 5 5 HELIX 3 AA3 PRO A 32 VAL A 45 1 14 HELIX 4 AA4 GLY A 46 VAL A 48 5 3 HELIX 5 AA5 ASN A 53 LYS A 64 1 12 HELIX 6 AA6 SER A 73 LEU A 86 1 14 HELIX 7 AA7 LEU A 86 SER A 97 1 12 HELIX 8 AA8 GLY A 106 GLY A 111 1 6 HELIX 9 AA9 LYS A 137 PHE A 141 5 5 HELIX 10 AB1 THR A 173 ILE A 184 1 12 HELIX 11 AB2 THR A 186 TYR A 189 5 4 HELIX 12 AB3 SER A 204 MET A 221 1 18 HELIX 13 AB4 LYS A 222 ILE A 224 5 3 HELIX 14 AB5 THR A 259 GLY A 266 1 8 HELIX 15 AB6 ASP A 267 ARG A 274 1 8 HELIX 16 AB7 GLY A 276 THR A 290 1 15 HELIX 17 AB8 ASP A 292 SER A 305 1 14 HELIX 18 AB9 THR A 315 GLU A 319 5 5 HELIX 19 AC1 ASN A 334 TYR A 353 1 20 HELIX 20 AC2 ASN A 357 LEU A 382 1 26 HELIX 21 AC3 PRO B 5 GLU B 18 1 14 HELIX 22 AC4 GLN B 100 ALA B 114 1 15 HELIX 23 AC5 ALA B 122 ASN B 132 1 11 HELIX 24 AC6 ASN B 132 ALA B 148 1 17 HELIX 25 AC7 THR D 22 GLY D 35 1 14 HELIX 26 AC8 PRO D 37 GLN D 41 5 5 HELIX 27 AC9 THR D 55 ASN D 60 1 6 SHEET 1 AA1 5 GLN A 100 VAL A 101 0 SHEET 2 AA1 5 LEU A 324 GLU A 332 -1 O PHE A 328 N GLN A 100 SHEET 3 AA1 5 LEU A 118 PHE A 127 -1 N ASP A 125 O ARG A 325 SHEET 4 AA1 5 TRP A 227 VAL A 237 -1 O ILE A 235 N VAL A 120 SHEET 5 AA1 5 TYR A 249 TYR A 251 -1 O TYR A 251 N THR A 234 SHEET 1 AA2 5 VAL A 167 ASP A 169 0 SHEET 2 AA2 5 GLN A 157 LEU A 161 -1 N TYR A 160 O ILE A 168 SHEET 3 AA2 5 LYS A 150 LEU A 154 -1 N TYR A 152 O VAL A 159 SHEET 4 AA2 5 LYS A 132 LYS A 135 1 N GLN A 134 O LEU A 153 SHEET 5 AA2 5 ASN A 191 ILE A 193 -1 O TYR A 192 N TYR A 133 SHEET 1 AA3 4 ILE B 23 PRO B 27 0 SHEET 2 AA3 4 TYR B 34 ALA B 40 -1 O VAL B 38 N LYS B 24 SHEET 3 AA3 4 THR B 51 PHE B 57 -1 O LEU B 54 N VAL B 37 SHEET 4 AA3 4 LYS B 68 PHE B 71 -1 O LYS B 68 N PHE B 57 SHEET 1 AA4 5 THR D 12 GLU D 16 0 SHEET 2 AA4 5 GLN D 2 LYS D 6 -1 N VAL D 5 O ILE D 13 SHEET 3 AA4 5 THR D 66 VAL D 70 1 O LEU D 67 N PHE D 4 SHEET 4 AA4 5 ARG D 42 PHE D 45 -1 N ARG D 42 O VAL D 70 SHEET 5 AA4 5 LYS D 48 GLN D 49 -1 O LYS D 48 N PHE D 45 CRYST1 150.527 150.527 58.372 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006643 0.003836 0.000000 0.00000 SCALE2 0.000000 0.007671 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017132 0.00000