data_7BY2 # _entry.id 7BY2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.341 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 7BY2 WWPDB D_1300016695 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 7BY2 _pdbx_database_status.recvd_initial_deposition_date 2020-04-21 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # _audit_author.name 'Kang, S.M.' _audit_author.pdbx_ordinal 1 _audit_author.identifier_ORCID ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country ? _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev 'To Be Published' _citation.journal_id_ASTM ? _citation.journal_id_CSD 0353 _citation.journal_id_ISSN ? _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume ? _citation.language ? _citation.page_first ? _citation.page_last ? _citation.title 'Toxin-antitoxin complex from Klebsiella pneumoniae' _citation.year ? _citation.database_id_CSD ? _citation.pdbx_database_id_DOI ? _citation.pdbx_database_id_PubMed ? _citation.unpublished_flag ? # _citation_author.citation_id primary _citation_author.name 'Kang, S.M.' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.angle_alpha 90.000 _cell.angle_alpha_esd ? _cell.angle_beta 90.000 _cell.angle_beta_esd ? _cell.angle_gamma 90.000 _cell.angle_gamma_esd ? _cell.entry_id 7BY2 _cell.details ? _cell.formula_units_Z ? _cell.length_a 79.200 _cell.length_a_esd ? _cell.length_b 110.323 _cell.length_b_esd ? _cell.length_c 59.703 _cell.length_c_esd ? _cell.volume 521659.834 _cell.volume_esd ? _cell.Z_PDB 8 _cell.reciprocal_angle_alpha ? _cell.reciprocal_angle_beta ? _cell.reciprocal_angle_gamma ? _cell.reciprocal_angle_alpha_esd ? _cell.reciprocal_angle_beta_esd ? _cell.reciprocal_angle_gamma_esd ? _cell.reciprocal_length_a ? _cell.reciprocal_length_b ? _cell.reciprocal_length_c ? _cell.reciprocal_length_a_esd ? _cell.reciprocal_length_b_esd ? _cell.reciprocal_length_c_esd ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7BY2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CopG family transcriptional regulator' 9799.104 1 ? ? ? ? 2 polymer man 'Ribonuclease VapC' 14582.157 1 3.1.-.- ? ? ? 3 water nat water 18.015 9 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Putative CopG-family DNA-binding protein,Ribbon-helix-helix domain-containing protein,YiiF protein' 2 'RNase VapC,Toxin VapC' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MSMMAERDMGRILLDLSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEKQDRAKDTISSALGLWQDCEEDGMEYQRQLRK EW ; ;MSMMAERDMGRILLDLSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEKQDRAKDTISSALGLWQDCEEDGMEYQRQLRK EW ; A ? 2 'polypeptide(L)' no yes ;(MSE)TSGSALFDTNILIDLFSGRREAKQALEAWPPQNAISLITW(MSE)EV(MSE)VGAKKYHQEQRTR(MSE)ALSTF NIINISQDIAERSVALRQEYKLKLPDAIILATAQLHRLELITRNTKDFAGIPGVVTPYEIHPE ; ;MTSGSALFDTNILIDLFSGRREAKQALEAWPPQNAISLITWMEVMVGAKKYHQEQRTRMALSTFNIINISQDIAERSVAL RQEYKLKLPDAIILATAQLHRLELITRNTKDFAGIPGVVTPYEIHPE ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 SER n 1 3 MET n 1 4 MET n 1 5 ALA n 1 6 GLU n 1 7 ARG n 1 8 ASP n 1 9 MET n 1 10 GLY n 1 11 ARG n 1 12 ILE n 1 13 LEU n 1 14 LEU n 1 15 ASP n 1 16 LEU n 1 17 SER n 1 18 ASP n 1 19 ASP n 1 20 VAL n 1 21 ILE n 1 22 GLN n 1 23 ARG n 1 24 LEU n 1 25 ASP n 1 26 ASP n 1 27 LEU n 1 28 LYS n 1 29 VAL n 1 30 GLN n 1 31 ARG n 1 32 ASN n 1 33 ILE n 1 34 PRO n 1 35 ARG n 1 36 ALA n 1 37 GLU n 1 38 LEU n 1 39 LEU n 1 40 ARG n 1 41 GLU n 1 42 ALA n 1 43 VAL n 1 44 GLU n 1 45 GLN n 1 46 TYR n 1 47 LEU n 1 48 GLU n 1 49 LYS n 1 50 GLN n 1 51 ASP n 1 52 ARG n 1 53 ALA n 1 54 LYS n 1 55 ASP n 1 56 THR n 1 57 ILE n 1 58 SER n 1 59 SER n 1 60 ALA n 1 61 LEU n 1 62 GLY n 1 63 LEU n 1 64 TRP n 1 65 GLN n 1 66 ASP n 1 67 CYS n 1 68 GLU n 1 69 GLU n 1 70 ASP n 1 71 GLY n 1 72 MET n 1 73 GLU n 1 74 TYR n 1 75 GLN n 1 76 ARG n 1 77 GLN n 1 78 LEU n 1 79 ARG n 1 80 LYS n 1 81 GLU n 1 82 TRP n 2 1 MSE n 2 2 THR n 2 3 SER n 2 4 GLY n 2 5 SER n 2 6 ALA n 2 7 LEU n 2 8 PHE n 2 9 ASP n 2 10 THR n 2 11 ASN n 2 12 ILE n 2 13 LEU n 2 14 ILE n 2 15 ASP n 2 16 LEU n 2 17 PHE n 2 18 SER n 2 19 GLY n 2 20 ARG n 2 21 ARG n 2 22 GLU n 2 23 ALA n 2 24 LYS n 2 25 GLN n 2 26 ALA n 2 27 LEU n 2 28 GLU n 2 29 ALA n 2 30 TRP n 2 31 PRO n 2 32 PRO n 2 33 GLN n 2 34 ASN n 2 35 ALA n 2 36 ILE n 2 37 SER n 2 38 LEU n 2 39 ILE n 2 40 THR n 2 41 TRP n 2 42 MSE n 2 43 GLU n 2 44 VAL n 2 45 MSE n 2 46 VAL n 2 47 GLY n 2 48 ALA n 2 49 LYS n 2 50 LYS n 2 51 TYR n 2 52 HIS n 2 53 GLN n 2 54 GLU n 2 55 GLN n 2 56 ARG n 2 57 THR n 2 58 ARG n 2 59 MSE n 2 60 ALA n 2 61 LEU n 2 62 SER n 2 63 THR n 2 64 PHE n 2 65 ASN n 2 66 ILE n 2 67 ILE n 2 68 ASN n 2 69 ILE n 2 70 SER n 2 71 GLN n 2 72 ASP n 2 73 ILE n 2 74 ALA n 2 75 GLU n 2 76 ARG n 2 77 SER n 2 78 VAL n 2 79 ALA n 2 80 LEU n 2 81 ARG n 2 82 GLN n 2 83 GLU n 2 84 TYR n 2 85 LYS n 2 86 LEU n 2 87 LYS n 2 88 LEU n 2 89 PRO n 2 90 ASP n 2 91 ALA n 2 92 ILE n 2 93 ILE n 2 94 LEU n 2 95 ALA n 2 96 THR n 2 97 ALA n 2 98 GLN n 2 99 LEU n 2 100 HIS n 2 101 ARG n 2 102 LEU n 2 103 GLU n 2 104 LEU n 2 105 ILE n 2 106 THR n 2 107 ARG n 2 108 ASN n 2 109 THR n 2 110 LYS n 2 111 ASP n 2 112 PHE n 2 113 ALA n 2 114 GLY n 2 115 ILE n 2 116 PRO n 2 117 GLY n 2 118 VAL n 2 119 VAL n 2 120 THR n 2 121 PRO n 2 122 TYR n 2 123 GLU n 2 124 ILE n 2 125 HIS n 2 126 PRO n 2 127 GLU n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample 'Biological sequence' 1 82 ? ? ;yiiF, B4U21_30180, B4U25_36990, B4U61_14815, B6R99_17700, BANRA_02143, BANRA_02521, BANRA_02705, BL124_00012815, BN49_4676, C2U49_19540, C3F39_14645, C4Y50_020990, C7V41_25295, CK508_014375, DD581_07355, DD583_18720, DM059_31040, DM060_29565, DM062_35665, DM078_20205, EAO17_14145, EXT45_23360, F0330_15215, F1D54_19805, F3G17_14565, F3G25_25430, FAM29_17470, FAT93_13335, FCH06_017260, FXN60_10800, FXN67_21280, FZ928_20910, FZ929_16080, NCTC11679_05637, NCTC13443_00678, NCTC13635_03530, NCTC204_01866, NCTC8849_00074, NCTC9128_03825, NCTC9140_00751, NCTC9617_03579, NCTC9637_06504, SAMEA104567806_05449, SAMEA104567903_04890, SAMEA1712987_04768, SAMEA24002668_04178, SAMEA3531867_04820, SAMEA3649709_04060, SAMEA3673128_04237, SAMEA4364603_04577, SAMEA4873575_05060, SK89_02101 ; ? ? ? ? ? ? 'Klebsiella pneumoniae' 573 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample 'Biological sequence' 1 127 ? ? ;vapC, B4U21_30185, B4U61_14820, B6R99_17695, BANRA_02522, BL124_00012810, BN49_4675, C1459_03020, C2U49_19545, C3F39_14640, C4Y50_020995, C7V41_25300, CK508_014380, DD581_07360, DM060_29570, DM078_20200, EAO17_14150, F1D54_19800, F3G25_25425, FAT93_13340, FCH06_017265, FXN60_10805, NCTC11679_05636, NCTC13443_00679, NCTC13465_05507, NCTC1936_00156, NCTC204_01865, NCTC8849_00075, NCTC9128_03826, SAMEA104567806_05448, SAMEA1712987_04767, SAMEA24002668_04177, SAMEA3531867_04819, SAMEA3649709_04059, SAMEA3673128_04238, SK89_02102 ; ? ? ? ? ? ? 'Klebsiella pneumoniae' 573 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 UNP W9BQC4_KLEPN W9BQC4 ? 1 ;MSMMAERDMGRILLDLSDDVIQRLDDLKVQRNIPRAELLREAVEQYLEKQDRAKDTISSALGLWQDCEEDGMEYQRQLRK EW ; 1 2 UNP A0A0W8AM92_KLEPN A0A0W8AM92 ? 2 ;MTSGSALFDTNILIDLFSGRREAKQALEAWPPQNAISLITWMEVMVGAKKYHQEQRTRMALSTFNIINISQDIAERSVAL RQEYKLKLPDAIILATAQLHRLELITRNTKDFAGIPGVVTPYEIHPE ; 1 # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 7BY2 A 1 ? 82 ? W9BQC4 1 ? 82 ? 1 82 2 2 7BY2 B 1 ? 127 ? A0A0W8AM92 1 ? 127 ? 1 127 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 7BY2 _exptl.crystals_number 1 _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.68 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 54.10 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details Tris _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 193 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment N # _diffrn_detector.details ? _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 270' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2017-11-03 _diffrn_detector.pdbx_frequency ? # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9794 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'PAL/PLS BEAMLINE 5C (4A)' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.9794 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline '5C (4A)' _diffrn_source.pdbx_synchrotron_site PAL/PLS # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 7BY2 _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.6 _reflns.d_resolution_low 50 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 8245 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 99.9 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.4 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 57.8 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all 0.054 _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_CC_star ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.60 _reflns_shell.d_res_low 2.64 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs 397 _reflns_shell.percent_possible_all ? _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all 0.0632 _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_CC_star ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean 75.43 _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 7BY2 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.6 _refine.ls_d_res_low 50 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 8227 _refine.ls_number_reflns_R_free 382 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.37 _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_free 0.3201 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.269 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_R_complete ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_average_fsc_overall ? _refine.pdbx_average_fsc_work ? _refine.pdbx_average_fsc_free ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1205 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 15 _refine_hist.number_atoms_total 1220 _refine_hist.d_res_high 2.6 _refine_hist.d_res_low 50 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.0063 ? 1224 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.4807 ? 1655 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.0547 ? 192 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.0041 ? 210 ? f_plane_restr ? ? 'X-RAY DIFFRACTION' ? 12.3553 ? 753 ? f_dihedral_angle_d ? ? # _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.R_factor_R_work ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_obs ? _refine_ls_shell.d_res_high 2.60 _refine_ls_shell.d_res_low 2.64 _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 397 _refine_ls_shell.pdbx_R_complete ? _refine_ls_shell.pdbx_fsc_free ? _refine_ls_shell.pdbx_fsc_work ? _refine_ls_shell.pdbx_phase_error ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.percent_reflns_obs 100 _refine_ls_shell.redundancy_reflns_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.wR_factor_R_free ? _refine_ls_shell.wR_factor_R_work ? _refine_ls_shell.wR_factor_all ? _refine_ls_shell.wR_factor_obs ? # _struct.entry_id 7BY2 _struct.title 'Toxin-antitoxin complex from Klebsiella pneumoniae' _struct.pdbx_descriptor 'CopG family transcriptional regulator, Ribonuclease VapC (E.C.3.1.-.-)' _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag N # _struct_keywords.entry_id 7BY2 _struct_keywords.text 'protein complex, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 ALA A 42 ? LEU A 47 ? ALA A 42 LEU A 47 1 ? 6 HELX_P HELX_P2 AA2 ASP A 51 ? LEU A 61 ? ASP A 51 LEU A 61 1 ? 11 HELX_P HELX_P3 AA3 ASP B 9 ? SER B 18 ? ASP B 9 SER B 18 1 ? 10 HELX_P HELX_P4 AA4 ARG B 20 ? ALA B 29 ? ARG B 20 ALA B 29 1 ? 10 HELX_P HELX_P5 AA5 LEU B 38 ? TYR B 51 ? LEU B 38 TYR B 51 1 ? 14 HELX_P HELX_P6 AA6 GLN B 53 ? SER B 62 ? GLN B 53 SER B 62 1 ? 10 HELX_P HELX_P7 AA7 SER B 70 ? LYS B 85 ? SER B 70 LYS B 85 1 ? 16 HELX_P HELX_P8 AA8 LYS B 87 ? HIS B 100 ? LYS B 87 HIS B 100 1 ? 14 HELX_P HELX_P9 AA9 ASN B 108 ? ALA B 113 ? ASN B 108 ALA B 113 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B TRP 41 C ? ? ? 1_555 B MSE 42 N ? ? B TRP 41 B MSE 42 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale2 covale both ? B MSE 42 C ? ? ? 1_555 B GLU 43 N ? ? B MSE 42 B GLU 43 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale3 covale both ? B VAL 44 C ? ? ? 1_555 B MSE 45 N ? ? B VAL 44 B MSE 45 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale4 covale both ? B MSE 45 C ? ? ? 1_555 B VAL 46 N ? ? B MSE 45 B VAL 46 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? B ARG 58 C ? ? ? 1_555 B MSE 59 N ? ? B ARG 58 B MSE 59 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale6 covale both ? B MSE 59 C ? ? ? 1_555 B ALA 60 N ? ? B MSE 59 B ALA 60 1_555 ? ? ? ? ? ? ? 1.329 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 ALA 36 A . ? ALA 36 A GLU 37 A ? GLU 37 A 1 -26.54 2 LEU 47 A . ? LEU 47 A GLU 48 A ? GLU 48 A 1 -14.53 3 GLU 48 A . ? GLU 48 A LYS 49 A ? LYS 49 A 1 25.59 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA1 ? 3 ? AA2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA1 1 2 ? parallel AA1 2 3 ? parallel AA2 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA1 1 ALA B 6 ? PHE B 8 ? ALA B 6 PHE B 8 AA1 2 GLU B 103 ? ILE B 105 ? GLU B 103 ILE B 105 AA1 3 VAL B 118 ? VAL B 119 ? VAL B 118 VAL B 119 AA2 1 ALA B 35 ? SER B 37 ? ALA B 35 SER B 37 AA2 2 ASN B 65 ? ILE B 67 ? ASN B 65 ILE B 67 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA1 1 2 N LEU B 7 ? N LEU B 7 O ILE B 105 ? O ILE B 105 AA1 2 3 N LEU B 104 ? N LEU B 104 O VAL B 119 ? O VAL B 119 AA2 1 2 N ILE B 36 ? N ILE B 36 O ASN B 65 ? O ASN B 65 # _atom_sites.entry_id 7BY2 _atom_sites.Cartn_transf_matrix[1][1] ? _atom_sites.Cartn_transf_matrix[1][2] ? _atom_sites.Cartn_transf_matrix[1][3] ? _atom_sites.Cartn_transf_matrix[2][1] ? _atom_sites.Cartn_transf_matrix[2][2] ? _atom_sites.Cartn_transf_matrix[2][3] ? _atom_sites.Cartn_transf_matrix[3][1] ? _atom_sites.Cartn_transf_matrix[3][2] ? _atom_sites.Cartn_transf_matrix[3][3] ? _atom_sites.Cartn_transf_vector[1] ? _atom_sites.Cartn_transf_vector[2] ? _atom_sites.Cartn_transf_vector[3] ? _atom_sites.fract_transf_matrix[1][1] 0.012626 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.009064 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016750 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 _atom_sites.solution_primary ? _atom_sites.solution_secondary ? _atom_sites.solution_hydrogens ? _atom_sites.special_details ? # loop_ _atom_type.symbol C N O SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 MET 3 3 ? ? ? A . n A 1 4 MET 4 4 ? ? ? A . n A 1 5 ALA 5 5 ? ? ? A . n A 1 6 GLU 6 6 ? ? ? A . n A 1 7 ARG 7 7 ? ? ? A . n A 1 8 ASP 8 8 ? ? ? A . n A 1 9 MET 9 9 ? ? ? A . n A 1 10 GLY 10 10 ? ? ? A . n A 1 11 ARG 11 11 ? ? ? A . n A 1 12 ILE 12 12 ? ? ? A . n A 1 13 LEU 13 13 ? ? ? A . n A 1 14 LEU 14 14 ? ? ? A . n A 1 15 ASP 15 15 ? ? ? A . n A 1 16 LEU 16 16 ? ? ? A . n A 1 17 SER 17 17 ? ? ? A . n A 1 18 ASP 18 18 ? ? ? A . n A 1 19 ASP 19 19 ? ? ? A . n A 1 20 VAL 20 20 ? ? ? A . n A 1 21 ILE 21 21 ? ? ? A . n A 1 22 GLN 22 22 ? ? ? A . n A 1 23 ARG 23 23 ? ? ? A . n A 1 24 LEU 24 24 ? ? ? A . n A 1 25 ASP 25 25 ? ? ? A . n A 1 26 ASP 26 26 ? ? ? A . n A 1 27 LEU 27 27 ? ? ? A . n A 1 28 LYS 28 28 ? ? ? A . n A 1 29 VAL 29 29 ? ? ? A . n A 1 30 GLN 30 30 ? ? ? A . n A 1 31 ARG 31 31 ? ? ? A . n A 1 32 ASN 32 32 ? ? ? A . n A 1 33 ILE 33 33 ? ? ? A . n A 1 34 PRO 34 34 ? ? ? A . n A 1 35 ARG 35 35 35 ARG ARG A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 GLU 37 37 37 GLU GLU A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ARG 40 40 40 ARG ARG A . n A 1 41 GLU 41 41 41 GLU GLU A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 GLN 45 45 45 GLN GLN A . n A 1 46 TYR 46 46 46 TYR TYR A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 LYS 49 49 49 LYS LYS A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 ASP 51 51 51 ASP ASP A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 LYS 54 54 54 LYS LYS A . n A 1 55 ASP 55 55 55 ASP ASP A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 ILE 57 57 57 ILE ILE A . n A 1 58 SER 58 58 58 SER SER A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 TRP 64 64 64 TRP TRP A . n A 1 65 GLN 65 65 ? ? ? A . n A 1 66 ASP 66 66 ? ? ? A . n A 1 67 CYS 67 67 ? ? ? A . n A 1 68 GLU 68 68 ? ? ? A . n A 1 69 GLU 69 69 ? ? ? A . n A 1 70 ASP 70 70 ? ? ? A . n A 1 71 GLY 71 71 ? ? ? A . n A 1 72 MET 72 72 ? ? ? A . n A 1 73 GLU 73 73 ? ? ? A . n A 1 74 TYR 74 74 ? ? ? A . n A 1 75 GLN 75 75 ? ? ? A . n A 1 76 ARG 76 76 ? ? ? A . n A 1 77 GLN 77 77 ? ? ? A . n A 1 78 LEU 78 78 ? ? ? A . n A 1 79 ARG 79 79 ? ? ? A . n A 1 80 LYS 80 80 ? ? ? A . n A 1 81 GLU 81 81 ? ? ? A . n A 1 82 TRP 82 82 ? ? ? A . n B 2 1 MSE 1 1 ? ? ? B . n B 2 2 THR 2 2 ? ? ? B . n B 2 3 SER 3 3 ? ? ? B . n B 2 4 GLY 4 4 ? ? ? B . n B 2 5 SER 5 5 5 SER SER B . n B 2 6 ALA 6 6 6 ALA ALA B . n B 2 7 LEU 7 7 7 LEU LEU B . n B 2 8 PHE 8 8 8 PHE PHE B . n B 2 9 ASP 9 9 9 ASP ASP B . n B 2 10 THR 10 10 10 THR THR B . n B 2 11 ASN 11 11 11 ASN ASN B . n B 2 12 ILE 12 12 12 ILE ILE B . n B 2 13 LEU 13 13 13 LEU LEU B . n B 2 14 ILE 14 14 14 ILE ILE B . n B 2 15 ASP 15 15 15 ASP ASP B . n B 2 16 LEU 16 16 16 LEU LEU B . n B 2 17 PHE 17 17 17 PHE PHE B . n B 2 18 SER 18 18 18 SER SER B . n B 2 19 GLY 19 19 19 GLY GLY B . n B 2 20 ARG 20 20 20 ARG ARG B . n B 2 21 ARG 21 21 21 ARG ARG B . n B 2 22 GLU 22 22 22 GLU GLU B . n B 2 23 ALA 23 23 23 ALA ALA B . n B 2 24 LYS 24 24 24 LYS LYS B . n B 2 25 GLN 25 25 25 GLN GLN B . n B 2 26 ALA 26 26 26 ALA ALA B . n B 2 27 LEU 27 27 27 LEU LEU B . n B 2 28 GLU 28 28 28 GLU GLU B . n B 2 29 ALA 29 29 29 ALA ALA B . n B 2 30 TRP 30 30 30 TRP TRP B . n B 2 31 PRO 31 31 31 PRO PRO B . n B 2 32 PRO 32 32 32 PRO PRO B . n B 2 33 GLN 33 33 33 GLN GLN B . n B 2 34 ASN 34 34 34 ASN ASN B . n B 2 35 ALA 35 35 35 ALA ALA B . n B 2 36 ILE 36 36 36 ILE ILE B . n B 2 37 SER 37 37 37 SER SER B . n B 2 38 LEU 38 38 38 LEU LEU B . n B 2 39 ILE 39 39 39 ILE ILE B . n B 2 40 THR 40 40 40 THR THR B . n B 2 41 TRP 41 41 41 TRP TRP B . n B 2 42 MSE 42 42 42 MSE MSE B . n B 2 43 GLU 43 43 43 GLU GLU B . n B 2 44 VAL 44 44 44 VAL VAL B . n B 2 45 MSE 45 45 45 MSE MSE B . n B 2 46 VAL 46 46 46 VAL VAL B . n B 2 47 GLY 47 47 47 GLY GLY B . n B 2 48 ALA 48 48 48 ALA ALA B . n B 2 49 LYS 49 49 49 LYS LYS B . n B 2 50 LYS 50 50 50 LYS LYS B . n B 2 51 TYR 51 51 51 TYR TYR B . n B 2 52 HIS 52 52 52 HIS HIS B . n B 2 53 GLN 53 53 53 GLN GLN B . n B 2 54 GLU 54 54 54 GLU GLU B . n B 2 55 GLN 55 55 55 GLN GLN B . n B 2 56 ARG 56 56 56 ARG ARG B . n B 2 57 THR 57 57 57 THR THR B . n B 2 58 ARG 58 58 58 ARG ARG B . n B 2 59 MSE 59 59 59 MSE MSE B . n B 2 60 ALA 60 60 60 ALA ALA B . n B 2 61 LEU 61 61 61 LEU LEU B . n B 2 62 SER 62 62 62 SER SER B . n B 2 63 THR 63 63 63 THR THR B . n B 2 64 PHE 64 64 64 PHE PHE B . n B 2 65 ASN 65 65 65 ASN ASN B . n B 2 66 ILE 66 66 66 ILE ILE B . n B 2 67 ILE 67 67 67 ILE ILE B . n B 2 68 ASN 68 68 68 ASN ASN B . n B 2 69 ILE 69 69 69 ILE ILE B . n B 2 70 SER 70 70 70 SER SER B . n B 2 71 GLN 71 71 71 GLN GLN B . n B 2 72 ASP 72 72 72 ASP ASP B . n B 2 73 ILE 73 73 73 ILE ILE B . n B 2 74 ALA 74 74 74 ALA ALA B . n B 2 75 GLU 75 75 75 GLU GLU B . n B 2 76 ARG 76 76 76 ARG ARG B . n B 2 77 SER 77 77 77 SER SER B . n B 2 78 VAL 78 78 78 VAL VAL B . n B 2 79 ALA 79 79 79 ALA ALA B . n B 2 80 LEU 80 80 80 LEU LEU B . n B 2 81 ARG 81 81 81 ARG ARG B . n B 2 82 GLN 82 82 82 GLN GLN B . n B 2 83 GLU 83 83 83 GLU GLU B . n B 2 84 TYR 84 84 84 TYR TYR B . n B 2 85 LYS 85 85 85 LYS LYS B . n B 2 86 LEU 86 86 86 LEU LEU B . n B 2 87 LYS 87 87 87 LYS LYS B . n B 2 88 LEU 88 88 88 LEU LEU B . n B 2 89 PRO 89 89 89 PRO PRO B . n B 2 90 ASP 90 90 90 ASP ASP B . n B 2 91 ALA 91 91 91 ALA ALA B . n B 2 92 ILE 92 92 92 ILE ILE B . n B 2 93 ILE 93 93 93 ILE ILE B . n B 2 94 LEU 94 94 94 LEU LEU B . n B 2 95 ALA 95 95 95 ALA ALA B . n B 2 96 THR 96 96 96 THR THR B . n B 2 97 ALA 97 97 97 ALA ALA B . n B 2 98 GLN 98 98 98 GLN GLN B . n B 2 99 LEU 99 99 99 LEU LEU B . n B 2 100 HIS 100 100 100 HIS HIS B . n B 2 101 ARG 101 101 101 ARG ARG B . n B 2 102 LEU 102 102 102 LEU LEU B . n B 2 103 GLU 103 103 103 GLU GLU B . n B 2 104 LEU 104 104 104 LEU LEU B . n B 2 105 ILE 105 105 105 ILE ILE B . n B 2 106 THR 106 106 106 THR THR B . n B 2 107 ARG 107 107 107 ARG ARG B . n B 2 108 ASN 108 108 108 ASN ASN B . n B 2 109 THR 109 109 109 THR THR B . n B 2 110 LYS 110 110 110 LYS LYS B . n B 2 111 ASP 111 111 111 ASP ASP B . n B 2 112 PHE 112 112 112 PHE PHE B . n B 2 113 ALA 113 113 113 ALA ALA B . n B 2 114 GLY 114 114 114 GLY GLY B . n B 2 115 ILE 115 115 115 ILE ILE B . n B 2 116 PRO 116 116 116 PRO PRO B . n B 2 117 GLY 117 117 117 GLY GLY B . n B 2 118 VAL 118 118 118 VAL VAL B . n B 2 119 VAL 119 119 119 VAL VAL B . n B 2 120 THR 120 120 120 THR THR B . n B 2 121 PRO 121 121 121 PRO PRO B . n B 2 122 TYR 122 122 122 TYR TYR B . n B 2 123 GLU 123 123 123 GLU GLU B . n B 2 124 ILE 124 124 124 ILE ILE B . n B 2 125 HIS 125 125 ? ? ? B . n B 2 126 PRO 126 126 ? ? ? B . n B 2 127 GLU 127 127 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HOH 1 101 9 HOH HOH A . D 3 HOH 1 201 15 HOH HOH B . D 3 HOH 2 202 13 HOH HOH B . D 3 HOH 3 203 6 HOH HOH B . D 3 HOH 4 204 14 HOH HOH B . D 3 HOH 5 205 1 HOH HOH B . D 3 HOH 6 206 2 HOH HOH B . D 3 HOH 7 207 7 HOH HOH B . D 3 HOH 8 209 12 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B MSE 42 B MSE 42 ? MET 'modified residue' 2 B MSE 45 B MSE 45 ? MET 'modified residue' 3 B MSE 59 B MSE 59 ? MET 'modified residue' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4840 ? 1 MORE -46 ? 1 'SSA (A^2)' 16260 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 29.8515000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2021-04-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? 1.18 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? HKL-2000 ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? . 4 # _pdbx_entry_details.entry_id 7BY2 _pdbx_entry_details.has_ligand_of_interest N _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 37 ? ? 74.64 -19.28 2 1 ARG A 40 ? ? 75.68 -19.64 3 1 GLN A 50 ? ? 91.56 -20.53 4 1 GLU B 123 ? ? -115.63 -72.57 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 GLU _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 44 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 GLN _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 45 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 36.38 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A SER 2 ? A SER 2 3 1 Y 1 A MET 3 ? A MET 3 4 1 Y 1 A MET 4 ? A MET 4 5 1 Y 1 A ALA 5 ? A ALA 5 6 1 Y 1 A GLU 6 ? A GLU 6 7 1 Y 1 A ARG 7 ? A ARG 7 8 1 Y 1 A ASP 8 ? A ASP 8 9 1 Y 1 A MET 9 ? A MET 9 10 1 Y 1 A GLY 10 ? A GLY 10 11 1 Y 1 A ARG 11 ? A ARG 11 12 1 Y 1 A ILE 12 ? A ILE 12 13 1 Y 1 A LEU 13 ? A LEU 13 14 1 Y 1 A LEU 14 ? A LEU 14 15 1 Y 1 A ASP 15 ? A ASP 15 16 1 Y 1 A LEU 16 ? A LEU 16 17 1 Y 1 A SER 17 ? A SER 17 18 1 Y 1 A ASP 18 ? A ASP 18 19 1 Y 1 A ASP 19 ? A ASP 19 20 1 Y 1 A VAL 20 ? A VAL 20 21 1 Y 1 A ILE 21 ? A ILE 21 22 1 Y 1 A GLN 22 ? A GLN 22 23 1 Y 1 A ARG 23 ? A ARG 23 24 1 Y 1 A LEU 24 ? A LEU 24 25 1 Y 1 A ASP 25 ? A ASP 25 26 1 Y 1 A ASP 26 ? A ASP 26 27 1 Y 1 A LEU 27 ? A LEU 27 28 1 Y 1 A LYS 28 ? A LYS 28 29 1 Y 1 A VAL 29 ? A VAL 29 30 1 Y 1 A GLN 30 ? A GLN 30 31 1 Y 1 A ARG 31 ? A ARG 31 32 1 Y 1 A ASN 32 ? A ASN 32 33 1 Y 1 A ILE 33 ? A ILE 33 34 1 Y 1 A PRO 34 ? A PRO 34 35 1 Y 1 A GLN 65 ? A GLN 65 36 1 Y 1 A ASP 66 ? A ASP 66 37 1 Y 1 A CYS 67 ? A CYS 67 38 1 Y 1 A GLU 68 ? A GLU 68 39 1 Y 1 A GLU 69 ? A GLU 69 40 1 Y 1 A ASP 70 ? A ASP 70 41 1 Y 1 A GLY 71 ? A GLY 71 42 1 Y 1 A MET 72 ? A MET 72 43 1 Y 1 A GLU 73 ? A GLU 73 44 1 Y 1 A TYR 74 ? A TYR 74 45 1 Y 1 A GLN 75 ? A GLN 75 46 1 Y 1 A ARG 76 ? A ARG 76 47 1 Y 1 A GLN 77 ? A GLN 77 48 1 Y 1 A LEU 78 ? A LEU 78 49 1 Y 1 A ARG 79 ? A ARG 79 50 1 Y 1 A LYS 80 ? A LYS 80 51 1 Y 1 A GLU 81 ? A GLU 81 52 1 Y 1 A TRP 82 ? A TRP 82 53 1 Y 1 B MSE 1 ? B MSE 1 54 1 Y 1 B THR 2 ? B THR 2 55 1 Y 1 B SER 3 ? B SER 3 56 1 Y 1 B GLY 4 ? B GLY 4 57 1 Y 1 B HIS 125 ? B HIS 125 58 1 Y 1 B PRO 126 ? B PRO 126 59 1 Y 1 B GLU 127 ? B GLU 127 # _pdbx_audit_support.funding_organization 'National Research Foundation (NRF, Korea)' _pdbx_audit_support.country ? _pdbx_audit_support.grant_number ? _pdbx_audit_support.ordinal 1 # _pdbx_entity_nonpoly.entity_id 3 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_struct_assembly_auth_evidence.id 1 _pdbx_struct_assembly_auth_evidence.assembly_id 1 _pdbx_struct_assembly_auth_evidence.experimental_support none _pdbx_struct_assembly_auth_evidence.details ? # _space_group.crystal_system orthorhombic _space_group.name_H-M_alt 'C 2 2 21' _space_group.IT_number 20 _space_group.name_Hall 'C 2c 2' _space_group.id 1 # loop_ _space_group_symop.id _space_group_symop.operation_xyz 1 x,y,z 2 x,-y,-z 3 -x,y,-z+1/2 4 -x,-y,z+1/2 5 x+1/2,y+1/2,z 6 x+1/2,-y+1/2,-z 7 -x+1/2,y+1/2,-z+1/2 8 -x+1/2,-y+1/2,z+1/2 #