HEADER METAL BINDING PROTEIN 29-APR-20 7BZZ TITLE CRYSTAL STRUCTURE OF THE SRCR DOMAIN OF MOUSE SCARA5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCAVENGER RECEPTOR CLASS A MEMBER 5; COMPND 3 CHAIN: A, D; COMPND 4 FRAGMENT: SRCR DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: SCARA5; SOURCE 6 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7111 KEYWDS SCARA5, SRCR, SR CLASS A, SCAVENGER RECEPTOR, FERRITIN, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.YU,Y.HE REVDAT 3 29-NOV-23 7BZZ 1 REMARK REVDAT 2 31-MAR-21 7BZZ 1 JRNL REVDAT 1 16-SEP-20 7BZZ 0 JRNL AUTH B.YU,C.CHENG,Y.WU,L.GUO,D.KONG,Z.ZHANG,Y.WANG,E.ZHENG,Y.LIU, JRNL AUTH 2 Y.HE JRNL TITL INTERACTIONS OF FERRITIN WITH SCAVENGER RECEPTOR CLASS A JRNL TITL 2 MEMBERS. JRNL REF J.BIOL.CHEM. V. 295 15727 2020 JRNL REFN ESSN 1083-351X JRNL PMID 32907880 JRNL DOI 10.1074/JBC.RA120.014690 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.15.2_3472 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.070 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 8038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.202 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.990 REMARK 3 FREE R VALUE TEST SET COUNT : 803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 27.1450 - 4.5378 0.99 1196 141 0.2021 0.2340 REMARK 3 2 4.5378 - 3.6045 1.00 1203 130 0.1748 0.2201 REMARK 3 3 3.6045 - 3.1496 1.00 1232 132 0.1963 0.2323 REMARK 3 4 3.1496 - 2.8620 1.00 1191 138 0.2181 0.2849 REMARK 3 5 2.8620 - 2.6570 1.00 1186 129 0.2041 0.2815 REMARK 3 6 2.6570 - 2.5010 0.99 1227 133 0.2301 0.2793 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.16 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 9.1253 7.0865 -17.8753 REMARK 3 T TENSOR REMARK 3 T11: 0.2637 T22: 0.3786 REMARK 3 T33: 0.2657 T12: -0.0911 REMARK 3 T13: -0.0188 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 1.0511 L22: 0.8545 REMARK 3 L33: 3.8641 L12: 0.0912 REMARK 3 L13: -1.2195 L23: -0.7179 REMARK 3 S TENSOR REMARK 3 S11: -0.1369 S12: -0.2401 S13: -0.0961 REMARK 3 S21: -0.1910 S22: 0.1223 S23: -0.0417 REMARK 3 S31: 0.0791 S32: 0.0472 S33: 0.0320 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 1 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: (CHAIN A AND (RESID 1 THROUGH 11 OR REMARK 3 (RESID 12 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 13 REMARK 3 THROUGH 109 OR RESID 201)) REMARK 3 SELECTION : (CHAIN D AND (RESID 1 THROUGH 108 OR REMARK 3 (RESID 109 AND (NAME N OR NAME CA OR NAME REMARK 3 C OR NAME O OR NAME CB )) OR RESID 201)) REMARK 3 ATOM PAIRS NUMBER : 862 REMARK 3 RMSD : 0.166 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 7BZZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300016794. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-18 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL18U1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8067 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 26.2200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 9.90 REMARK 200 R MERGE FOR SHELL (I) : 0.32600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 6J02 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.74 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) POLYETHYLENE GLYCOL 3350, REMARK 280 0.2M AMMONIUM SULFATE (PH 6.0), VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.05767 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.11533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 HIS D 493 REMARK 465 HIS D 494 REMARK 465 HIS D 495 REMARK 465 HIS D 496 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 384 CG SD CE REMARK 470 HIS A 492 CG ND1 CD2 CE1 NE2 REMARK 470 MET D 384 CG SD CE REMARK 470 SER D 395 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG D 443 O HOH D 601 1.97 REMARK 500 NH2 ARG A 443 O HOH A 601 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HH12 ARG A 440 OE1 GLU D 436 2555 1.47 REMARK 500 OD2 ASP A 416 NZ LYS D 420 2555 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 397 2.58 -67.20 REMARK 500 ASP A 407 51.50 34.88 REMARK 500 ARG A 408 -4.79 94.49 REMARK 500 PHE A 444 40.35 -109.00 REMARK 500 PRO D 397 1.99 -66.32 REMARK 500 ASP D 407 55.27 34.29 REMARK 500 ARG D 408 -3.63 89.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 415 OD1 REMARK 620 2 ASP A 416 OD1 78.3 REMARK 620 3 GLU A 482 OE2 99.4 88.0 REMARK 620 4 HOH A 611 O 82.0 160.0 98.2 REMARK 620 5 HOH A 615 O 152.4 129.1 81.0 70.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 416 OD2 REMARK 620 2 ASP A 454 OD1 83.8 REMARK 620 3 ASP A 454 OD2 118.9 49.5 REMARK 620 4 ASP A 455 OD1 120.5 62.1 74.8 REMARK 620 5 ASN A 477 OD1 83.7 104.2 74.8 147.9 REMARK 620 6 HOH A 612 O 154.6 118.3 74.1 83.0 78.9 REMARK 620 7 GLU D 437 OE1 95.2 19.3 30.8 68.4 90.1 103.1 REMARK 620 8 GLU D 437 OE2 97.1 22.2 28.0 69.2 88.2 100.7 2.8 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 417 O REMARK 620 2 ASP A 419 OD2 81.6 REMARK 620 3 ASP A 422 OD1 123.7 112.6 REMARK 620 4 ASP A 422 OD2 80.8 90.2 46.9 REMARK 620 5 VAL A 456 O 86.5 168.1 73.7 87.2 REMARK 620 6 HOH A 603 O 160.5 79.2 67.8 102.6 112.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 437 OE1 REMARK 620 2 GLU A 437 OE2 49.0 REMARK 620 3 ASP D 416 OD2 34.3 14.9 REMARK 620 4 ASP D 454 OD1 35.2 14.6 2.5 REMARK 620 5 ASP D 454 OD2 38.1 12.0 4.4 2.8 REMARK 620 6 ASP D 455 OD1 36.1 15.1 5.0 2.6 3.3 REMARK 620 7 ASN D 477 OD1 38.2 11.0 3.9 3.9 2.4 5.5 REMARK 620 8 HOH D 611 O 39.3 11.5 5.9 4.1 1.6 3.6 3.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 415 OD1 REMARK 620 2 ASP D 416 OD1 79.4 REMARK 620 3 GLU D 482 OE2 101.4 88.2 REMARK 620 4 HOH D 610 O 83.2 161.8 100.7 REMARK 620 5 HOH D 617 O 163.4 115.8 86.5 80.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 504 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY D 417 O REMARK 620 2 ASP D 419 OD2 77.9 REMARK 620 3 ASP D 422 OD1 121.3 112.5 REMARK 620 4 ASP D 422 OD2 77.7 87.0 47.5 REMARK 620 5 VAL D 456 O 85.1 162.9 74.9 87.6 REMARK 620 N 1 2 3 4 DBREF 7BZZ A 384 489 UNP Q8K299 SCAR5_MOUSE 384 489 DBREF 7BZZ D 384 489 UNP Q8K299 SCAR5_MOUSE 384 489 SEQADV 7BZZ SER A 490 UNP Q8K299 EXPRESSION TAG SEQADV 7BZZ HIS A 491 UNP Q8K299 EXPRESSION TAG SEQADV 7BZZ HIS A 492 UNP Q8K299 EXPRESSION TAG SEQADV 7BZZ HIS A 493 UNP Q8K299 EXPRESSION TAG SEQADV 7BZZ HIS A 494 UNP Q8K299 EXPRESSION TAG SEQADV 7BZZ HIS A 495 UNP Q8K299 EXPRESSION TAG SEQADV 7BZZ HIS A 496 UNP Q8K299 EXPRESSION TAG SEQADV 7BZZ SER D 490 UNP Q8K299 EXPRESSION TAG SEQADV 7BZZ HIS D 491 UNP Q8K299 EXPRESSION TAG SEQADV 7BZZ HIS D 492 UNP Q8K299 EXPRESSION TAG SEQADV 7BZZ HIS D 493 UNP Q8K299 EXPRESSION TAG SEQADV 7BZZ HIS D 494 UNP Q8K299 EXPRESSION TAG SEQADV 7BZZ HIS D 495 UNP Q8K299 EXPRESSION TAG SEQADV 7BZZ HIS D 496 UNP Q8K299 EXPRESSION TAG SEQRES 1 A 113 MET ASP PHE THR MET ILE ARG LEU VAL ASN GLY SER GLY SEQRES 2 A 113 PRO HIS GLN GLY ARG VAL GLU VAL PHE HIS ASP ARG ARG SEQRES 3 A 113 TRP GLY THR VAL CYS ASP ASP GLY TRP ASP LYS LYS ASP SEQRES 4 A 113 GLY ASP VAL VAL CYS ARG MET LEU GLY PHE HIS GLY VAL SEQRES 5 A 113 GLU GLU VAL TYR ARG THR ALA ARG PHE GLY GLN GLY THR SEQRES 6 A 113 GLY ARG ILE TRP MET ASP ASP VAL ASN CYS LYS GLY THR SEQRES 7 A 113 GLU SER SER ILE PHE HIS CYS GLN PHE SER LYS TRP GLY SEQRES 8 A 113 VAL THR ASN CYS GLY HIS ALA GLU ASP ALA GLY VAL THR SEQRES 9 A 113 CYS THR SER HIS HIS HIS HIS HIS HIS SEQRES 1 D 113 MET ASP PHE THR MET ILE ARG LEU VAL ASN GLY SER GLY SEQRES 2 D 113 PRO HIS GLN GLY ARG VAL GLU VAL PHE HIS ASP ARG ARG SEQRES 3 D 113 TRP GLY THR VAL CYS ASP ASP GLY TRP ASP LYS LYS ASP SEQRES 4 D 113 GLY ASP VAL VAL CYS ARG MET LEU GLY PHE HIS GLY VAL SEQRES 5 D 113 GLU GLU VAL TYR ARG THR ALA ARG PHE GLY GLN GLY THR SEQRES 6 D 113 GLY ARG ILE TRP MET ASP ASP VAL ASN CYS LYS GLY THR SEQRES 7 D 113 GLU SER SER ILE PHE HIS CYS GLN PHE SER LYS TRP GLY SEQRES 8 D 113 VAL THR ASN CYS GLY HIS ALA GLU ASP ALA GLY VAL THR SEQRES 9 D 113 CYS THR SER HIS HIS HIS HIS HIS HIS HET NAG A 501 14 HET CA A 502 1 HET CA A 503 1 HET CA A 504 1 HET NAG D 501 14 HET CA D 502 1 HET CA D 503 1 HET CA D 504 1 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 3 NAG 2(C8 H15 N O6) FORMUL 4 CA 6(CA 2+) FORMUL 11 HOH *38(H2 O) HELIX 1 AA1 ASP A 385 THR A 387 5 3 HELIX 2 AA2 ASP A 419 LEU A 430 1 12 HELIX 3 AA3 SER A 464 CYS A 468 5 5 HELIX 4 AA4 GLY A 479 ASP A 483 5 5 HELIX 5 AA5 ASP D 385 THR D 387 5 3 HELIX 6 AA6 ASP D 419 LEU D 430 1 12 HELIX 7 AA7 SER D 464 CYS D 468 5 5 HELIX 8 AA8 GLY D 479 ASP D 483 5 5 SHEET 1 AA1 4 ILE A 389 ASN A 393 0 SHEET 2 AA1 4 GLN A 399 HIS A 406 -1 O GLU A 403 N ARG A 390 SHEET 3 AA1 4 GLY A 485 CYS A 488 -1 O VAL A 486 N GLY A 400 SHEET 4 AA1 4 VAL A 435 TYR A 439 -1 N TYR A 439 O GLY A 485 SHEET 1 AA2 4 ILE A 389 ASN A 393 0 SHEET 2 AA2 4 GLN A 399 HIS A 406 -1 O GLU A 403 N ARG A 390 SHEET 3 AA2 4 ARG A 409 VAL A 413 -1 O ARG A 409 N HIS A 406 SHEET 4 AA2 4 ARG A 450 MET A 453 1 O TRP A 452 N THR A 412 SHEET 1 AA3 4 ILE D 389 ASN D 393 0 SHEET 2 AA3 4 GLN D 399 HIS D 406 -1 O GLU D 403 N ARG D 390 SHEET 3 AA3 4 GLY D 485 CYS D 488 -1 O VAL D 486 N GLY D 400 SHEET 4 AA3 4 VAL D 435 TYR D 439 -1 N GLU D 437 O THR D 487 SHEET 1 AA4 4 ILE D 389 ASN D 393 0 SHEET 2 AA4 4 GLN D 399 HIS D 406 -1 O GLU D 403 N ARG D 390 SHEET 3 AA4 4 ARG D 409 VAL D 413 -1 O ARG D 409 N HIS D 406 SHEET 4 AA4 4 ILE D 451 MET D 453 1 O TRP D 452 N THR D 412 SSBOND 1 CYS A 414 CYS A 478 1555 1555 2.03 SSBOND 2 CYS A 427 CYS A 488 1555 1555 2.09 SSBOND 3 CYS A 458 CYS A 468 1555 1555 2.05 SSBOND 4 CYS D 414 CYS D 478 1555 1555 2.03 SSBOND 5 CYS D 427 CYS D 488 1555 1555 2.12 SSBOND 6 CYS D 458 CYS D 468 1555 1555 2.06 LINK ND2 ASN A 393 C1 NAG A 501 1555 1555 1.44 LINK ND2 ASN D 393 C1 NAG D 501 1555 1555 1.43 LINK OD1 ASP A 415 CA CA A 502 1555 1555 2.45 LINK OD1 ASP A 416 CA CA A 502 1555 1555 2.30 LINK OD2 ASP A 416 CA CA A 503 1555 1555 2.49 LINK O GLY A 417 CA CA A 504 1555 1555 2.33 LINK OD2 ASP A 419 CA CA A 504 1555 1555 2.36 LINK OD1 ASP A 422 CA CA A 504 1555 1555 2.98 LINK OD2 ASP A 422 CA CA A 504 1555 1555 2.36 LINK OE1 GLU A 437 CA CA D 503 1555 2655 2.72 LINK OE2 GLU A 437 CA CA D 503 1555 2655 2.58 LINK OD1 ASP A 454 CA CA A 503 1555 1555 2.73 LINK OD2 ASP A 454 CA CA A 503 1555 1555 2.48 LINK OD1 ASP A 455 CA CA A 503 1555 1555 2.33 LINK O VAL A 456 CA CA A 504 1555 1555 2.51 LINK OD1 ASN A 477 CA CA A 503 1555 1555 2.28 LINK OE2 GLU A 482 CA CA A 502 1555 1555 2.35 LINK CA CA A 502 O HOH A 611 1555 1555 2.43 LINK CA CA A 502 O HOH A 615 1555 1555 2.90 LINK CA CA A 503 O HOH A 612 1555 1555 2.34 LINK CA CA A 503 OE1 GLU D 437 3554 1555 2.72 LINK CA CA A 503 OE2 GLU D 437 3554 1555 2.61 LINK CA CA A 504 O HOH A 603 1555 1555 2.61 LINK OD1 ASP D 415 CA CA D 502 1555 1555 2.39 LINK OD1 ASP D 416 CA CA D 502 1555 1555 2.32 LINK OD2 ASP D 416 CA CA D 503 1555 1555 2.53 LINK O GLY D 417 CA CA D 504 1555 1555 2.44 LINK OD2 ASP D 419 CA CA D 504 1555 1555 2.43 LINK OD1 ASP D 422 CA CA D 504 1555 1555 2.93 LINK OD2 ASP D 422 CA CA D 504 1555 1555 2.40 LINK OD1 ASP D 454 CA CA D 503 1555 1555 2.79 LINK OD2 ASP D 454 CA CA D 503 1555 1555 2.49 LINK OD1 ASP D 455 CA CA D 503 1555 1555 2.34 LINK O VAL D 456 CA CA D 504 1555 1555 2.46 LINK OD1 ASN D 477 CA CA D 503 1555 1555 2.27 LINK OE2 GLU D 482 CA CA D 502 1555 1555 2.34 LINK CA CA D 502 O HOH D 610 1555 1555 2.43 LINK CA CA D 502 O HOH D 617 1555 1555 2.47 LINK CA CA D 503 O HOH D 611 1555 1555 2.38 CRYST1 39.795 39.795 132.173 90.00 90.00 120.00 P 31 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025129 0.014508 0.000000 0.00000 SCALE2 0.000000 0.029016 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007566 0.00000