HEADER TRANSFERASE 04-MAY-20 7C1I TITLE CRYSTAL STRUCTURE OF HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN B TITLE 2 (HPTB) FROM PSEUDOMONAS AERUGINOSA PAO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE KINASE; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: HISTIDINE-CONTAINING PHOSPHOTRANSFER (HPT) DOMAIN PROTEIN, COMPND 5 HPT DOMAIN-CONTAINING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: C0044_25200, F3H14_21835, GNQ12_19260, GNQ27_08460, SOURCE 5 NCTC10662_05262; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS P. AERUGINOSA, TWO-COMPONENT REGULATORY SYSTEM, SENSOR HISTIDINE KEYWDS 2 KINASE, HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.K.CHEN,H.H.GUAN,P.H.WU,L.T.LIN,M.C.WU,H.Y.CHANG,N.C.CHEN,C.C.LIN, AUTHOR 2 P.CHUANKHAYAN,Y.C.HUANG,P.J.LIN,C.J.CHEN REVDAT 2 27-MAR-24 7C1I 1 REMARK REVDAT 1 04-NOV-20 7C1I 0 JRNL AUTH S.K.CHEN,H.H.GUAN,P.H.WU,L.T.LIN,M.C.WU,H.Y.CHANG,N.C.CHEN, JRNL AUTH 2 C.C.LIN,P.CHUANKHAYAN,Y.C.HUANG,P.J.LIN,C.J.CHEN JRNL TITL STRUCTURAL INSIGHTS INTO THE HISTIDINE-CONTAINING JRNL TITL 2 PHOSPHO-TRANSFER PROTEIN AND RECEIVER DOMAIN OF SENSOR JRNL TITL 3 HISTIDINE KINASE SUGGEST A COMPLEX MODEL IN THE JRNL TITL 4 TWO-COMPONENT REGULATORY SYSTEM IN PSEUDOMONAS AERUGINOSA JRNL REF IUCRJ V. 7 934 2020 JRNL REFN ESSN 2052-2525 JRNL PMID 32939285 JRNL DOI 10.1107/S2052252520009665 REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0258 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.37 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 157637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.194 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 8321 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.62 REMARK 3 REFLECTION IN BIN (WORKING SET) : 11651 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2620 REMARK 3 BIN FREE R VALUE SET COUNT : 618 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5499 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.96 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.080 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.055 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.577 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.954 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6547 ; 0.001 ; 0.013 REMARK 3 BOND LENGTHS OTHERS (A): 6037 ; 0.000 ; 0.017 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8924 ; 3.085 ; 1.646 REMARK 3 BOND ANGLES OTHERS (DEGREES): 14002 ; 1.804 ; 1.582 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 873 ; 6.086 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 467 ;30.190 ;20.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1216 ;13.363 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 99 ;23.453 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 790 ; 0.129 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 8018 ; 0.018 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1601 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3240 ; 2.972 ; 1.929 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3239 ; 2.939 ; 1.927 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4194 ; 3.746 ; 2.862 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4195 ; 3.763 ; 2.863 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3307 ; 5.203 ; 2.498 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3308 ; 5.203 ; 2.499 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4730 ; 7.208 ; 3.554 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 8564 ; 9.976 ;27.693 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 8129 ; 9.765 ;25.860 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 7C1I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-20. REMARK 100 THE DEPOSITION ID IS D_1300012655. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-APR-17 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL15A1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX300HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 166104 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 14.50 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 36.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 14.30 REMARK 200 R MERGE FOR SHELL (I) : 0.76100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, BICINE/SODIUM HYDROXIDE, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.97500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 59.58600 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 59.58600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 128.96250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 59.58600 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 59.58600 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 42.98750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 59.58600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.58600 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 128.96250 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 59.58600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.58600 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 42.98750 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 85.97500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C 238 LIES ON A SPECIAL POSITION. REMARK 375 HOH E 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 465 MET C 1 REMARK 465 MET D 1 REMARK 465 MET E 1 REMARK 465 MET F 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 247 O HOH D 332 1.84 REMARK 500 NH1 ARG B 36 O HOH B 201 1.88 REMARK 500 NE2 GLN F 88 O HOH F 201 1.94 REMARK 500 NE ARG C 99 O HOH C 201 1.99 REMARK 500 NE ARG D 9 O HOH D 201 2.07 REMARK 500 O HOH B 234 O HOH B 373 2.08 REMARK 500 OE1 GLN A 50 O HOH A 201 2.10 REMARK 500 O HOH A 295 O HOH A 362 2.11 REMARK 500 OG SER D 2 O HOH D 202 2.13 REMARK 500 O HOH A 265 O HOH A 319 2.14 REMARK 500 O HOH E 364 O HOH E 409 2.14 REMARK 500 O HOH E 210 O HOH E 362 2.15 REMARK 500 NE2 GLN F 113 O HOH F 202 2.15 REMARK 500 CZ ARG F 9 O HOH F 204 2.16 REMARK 500 OE1 GLN B 50 O HOH B 202 2.16 REMARK 500 OE2 GLU F 111 O HOH F 203 2.16 REMARK 500 NH2 ARG F 9 O HOH F 204 2.17 REMARK 500 O HOH A 321 O HOH C 324 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 28 O - C - N ANGL. DEV. = 10.5 DEGREES REMARK 500 ASP A 32 CB - CG - OD2 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 36 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 83 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 MET A 97 CG - SD - CE ANGL. DEV. = -10.3 DEGREES REMARK 500 ARG A 99 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = -11.0 DEGREES REMARK 500 PHE A 108 CB - CG - CD2 ANGL. DEV. = -5.6 DEGREES REMARK 500 PHE A 108 CB - CG - CD1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG A 114 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 TYR A 115 CB - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TYR A 115 CB - CG - CD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 116 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 9 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 THR B 28 O - C - N ANGL. DEV. = -10.2 DEGREES REMARK 500 THR B 28 O - C - N ANGL. DEV. = 11.2 DEGREES REMARK 500 ASP B 48 CB - CG - OD1 ANGL. DEV. = -5.6 DEGREES REMARK 500 ARG B 53 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ALA B 56 N - CA - CB ANGL. DEV. = 9.4 DEGREES REMARK 500 MET B 97 CG - SD - CE ANGL. DEV. = -21.9 DEGREES REMARK 500 ARG B 99 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 99 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 99 NE - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG B 99 NE - CZ - NH2 ANGL. DEV. = -8.7 DEGREES REMARK 500 PHE B 101 CB - CG - CD2 ANGL. DEV. = 4.9 DEGREES REMARK 500 PHE B 101 CG - CD2 - CE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 PHE B 108 CB - CG - CD2 ANGL. DEV. = -6.2 DEGREES REMARK 500 PHE B 108 CB - CG - CD1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG B 116 CA - C - O ANGL. DEV. = -14.8 DEGREES REMARK 500 ARG C 9 CG - CD - NE ANGL. DEV. = 14.9 DEGREES REMARK 500 TYR C 74 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 GLU C 79 OE1 - CD - OE2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG C 83 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG C 99 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG C 99 NE - CZ - NH2 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG C 99 O - C - N ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG C 105 NE - CZ - NH1 ANGL. DEV. = -4.4 DEGREES REMARK 500 PHE C 108 CB - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 PHE C 108 CB - CG - CD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ASN D 65 OD1 - CG - ND2 ANGL. DEV. = 17.0 DEGREES REMARK 500 ARG D 83 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 GLU D 95 O - C - N ANGL. DEV. = -10.0 DEGREES REMARK 500 ARG D 99 CG - CD - NE ANGL. DEV. = -13.0 DEGREES REMARK 500 ARG D 99 CG - CD - NE ANGL. DEV. = 14.1 DEGREES REMARK 500 ARG D 116 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP E 32 CB - CG - OD2 ANGL. DEV. = -8.3 DEGREES REMARK 500 ARG E 36 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ASP E 48 CB - CG - OD1 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG E 83 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 GLU E 95 O - C - N ANGL. DEV. = -11.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 66 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 19 -112.87 45.64 REMARK 500 GLU A 19 -112.70 43.08 REMARK 500 GLU B 19 -112.17 50.33 REMARK 500 GLU B 86 56.50 -98.39 REMARK 500 ARG C 9 -70.63 -41.35 REMARK 500 GLU C 19 -116.09 47.25 REMARK 500 GLU C 19 -107.36 47.25 REMARK 500 GLU D 19 -114.46 53.84 REMARK 500 GLU D 19 -123.33 53.84 REMARK 500 GLU E 19 -110.94 46.13 REMARK 500 GLU F 19 -113.09 49.93 REMARK 500 GLU F 19 -122.98 49.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 GLN B 113 0.08 SIDE CHAIN REMARK 500 GLN D 113 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 67 -10.44 REMARK 500 GLY B 73 -10.25 REMARK 500 ALA C 82 12.63 REMARK 500 ASP E 20 11.95 REMARK 500 LEU E 52 10.26 REMARK 500 ASP F 7 11.32 REMARK 500 ILE F 103 10.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 407 DISTANCE = 6.01 ANGSTROMS REMARK 525 HOH A 408 DISTANCE = 6.16 ANGSTROMS REMARK 525 HOH A 409 DISTANCE = 8.38 ANGSTROMS REMARK 525 HOH B 388 DISTANCE = 6.12 ANGSTROMS REMARK 525 HOH B 389 DISTANCE = 7.27 ANGSTROMS REMARK 525 HOH C 400 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH D 413 DISTANCE = 5.89 ANGSTROMS REMARK 525 HOH D 414 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH D 415 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH E 412 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH E 413 DISTANCE = 6.91 ANGSTROMS REMARK 525 HOH E 414 DISTANCE = 7.39 ANGSTROMS REMARK 525 HOH E 415 DISTANCE = 7.55 ANGSTROMS REMARK 525 HOH F 398 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH F 399 DISTANCE = 6.14 ANGSTROMS REMARK 525 HOH F 400 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH F 401 DISTANCE = 8.07 ANGSTROMS DBREF1 7C1I A 1 116 UNP A0A2V3FJP9_PSEAI DBREF2 7C1I A A0A2V3FJP9 1 116 DBREF1 7C1I B 1 116 UNP A0A2V3FJP9_PSEAI DBREF2 7C1I B A0A2V3FJP9 1 116 DBREF1 7C1I C 1 116 UNP A0A2V3FJP9_PSEAI DBREF2 7C1I C A0A2V3FJP9 1 116 DBREF1 7C1I D 1 116 UNP A0A2V3FJP9_PSEAI DBREF2 7C1I D A0A2V3FJP9 1 116 DBREF1 7C1I E 1 116 UNP A0A2V3FJP9_PSEAI DBREF2 7C1I E A0A2V3FJP9 1 116 DBREF1 7C1I F 1 116 UNP A0A2V3FJP9_PSEAI DBREF2 7C1I F A0A2V3FJP9 1 116 SEQRES 1 A 116 MET SER ALA PRO HIS LEU ASP ASP ARG VAL LEU ALA SER SEQRES 2 A 116 LEU GLN GLU VAL MET GLU ASP GLU TYR PRO VAL LEU LEU SEQRES 3 A 116 ASP THR PHE VAL LEU ASP SER GLU GLU ARG LEU ARG SER SEQRES 4 A 116 LEU HIS ALA ALA LEU GLN ALA GLY ASP ALA GLN ALA LEU SEQRES 5 A 116 ARG HIS THR ALA HIS SER PHE LYS GLY GLY SER SER ASN SEQRES 6 A 116 MET GLY ALA VAL LEU LEU ALA GLY TYR CYS LYS GLU LEU SEQRES 7 A 116 GLU GLU SER ALA ARG ARG GLY GLU LEU GLN ARG ALA PRO SEQRES 8 A 116 ALA LEU ILE GLU GLN MET GLU ARG GLU PHE ALA ILE VAL SEQRES 9 A 116 ARG ILE LEU PHE LYS GLN GLU ARG GLN ARG TYR ARG SEQRES 1 B 116 MET SER ALA PRO HIS LEU ASP ASP ARG VAL LEU ALA SER SEQRES 2 B 116 LEU GLN GLU VAL MET GLU ASP GLU TYR PRO VAL LEU LEU SEQRES 3 B 116 ASP THR PHE VAL LEU ASP SER GLU GLU ARG LEU ARG SER SEQRES 4 B 116 LEU HIS ALA ALA LEU GLN ALA GLY ASP ALA GLN ALA LEU SEQRES 5 B 116 ARG HIS THR ALA HIS SER PHE LYS GLY GLY SER SER ASN SEQRES 6 B 116 MET GLY ALA VAL LEU LEU ALA GLY TYR CYS LYS GLU LEU SEQRES 7 B 116 GLU GLU SER ALA ARG ARG GLY GLU LEU GLN ARG ALA PRO SEQRES 8 B 116 ALA LEU ILE GLU GLN MET GLU ARG GLU PHE ALA ILE VAL SEQRES 9 B 116 ARG ILE LEU PHE LYS GLN GLU ARG GLN ARG TYR ARG SEQRES 1 C 116 MET SER ALA PRO HIS LEU ASP ASP ARG VAL LEU ALA SER SEQRES 2 C 116 LEU GLN GLU VAL MET GLU ASP GLU TYR PRO VAL LEU LEU SEQRES 3 C 116 ASP THR PHE VAL LEU ASP SER GLU GLU ARG LEU ARG SER SEQRES 4 C 116 LEU HIS ALA ALA LEU GLN ALA GLY ASP ALA GLN ALA LEU SEQRES 5 C 116 ARG HIS THR ALA HIS SER PHE LYS GLY GLY SER SER ASN SEQRES 6 C 116 MET GLY ALA VAL LEU LEU ALA GLY TYR CYS LYS GLU LEU SEQRES 7 C 116 GLU GLU SER ALA ARG ARG GLY GLU LEU GLN ARG ALA PRO SEQRES 8 C 116 ALA LEU ILE GLU GLN MET GLU ARG GLU PHE ALA ILE VAL SEQRES 9 C 116 ARG ILE LEU PHE LYS GLN GLU ARG GLN ARG TYR ARG SEQRES 1 D 116 MET SER ALA PRO HIS LEU ASP ASP ARG VAL LEU ALA SER SEQRES 2 D 116 LEU GLN GLU VAL MET GLU ASP GLU TYR PRO VAL LEU LEU SEQRES 3 D 116 ASP THR PHE VAL LEU ASP SER GLU GLU ARG LEU ARG SER SEQRES 4 D 116 LEU HIS ALA ALA LEU GLN ALA GLY ASP ALA GLN ALA LEU SEQRES 5 D 116 ARG HIS THR ALA HIS SER PHE LYS GLY GLY SER SER ASN SEQRES 6 D 116 MET GLY ALA VAL LEU LEU ALA GLY TYR CYS LYS GLU LEU SEQRES 7 D 116 GLU GLU SER ALA ARG ARG GLY GLU LEU GLN ARG ALA PRO SEQRES 8 D 116 ALA LEU ILE GLU GLN MET GLU ARG GLU PHE ALA ILE VAL SEQRES 9 D 116 ARG ILE LEU PHE LYS GLN GLU ARG GLN ARG TYR ARG SEQRES 1 E 116 MET SER ALA PRO HIS LEU ASP ASP ARG VAL LEU ALA SER SEQRES 2 E 116 LEU GLN GLU VAL MET GLU ASP GLU TYR PRO VAL LEU LEU SEQRES 3 E 116 ASP THR PHE VAL LEU ASP SER GLU GLU ARG LEU ARG SER SEQRES 4 E 116 LEU HIS ALA ALA LEU GLN ALA GLY ASP ALA GLN ALA LEU SEQRES 5 E 116 ARG HIS THR ALA HIS SER PHE LYS GLY GLY SER SER ASN SEQRES 6 E 116 MET GLY ALA VAL LEU LEU ALA GLY TYR CYS LYS GLU LEU SEQRES 7 E 116 GLU GLU SER ALA ARG ARG GLY GLU LEU GLN ARG ALA PRO SEQRES 8 E 116 ALA LEU ILE GLU GLN MET GLU ARG GLU PHE ALA ILE VAL SEQRES 9 E 116 ARG ILE LEU PHE LYS GLN GLU ARG GLN ARG TYR ARG SEQRES 1 F 116 MET SER ALA PRO HIS LEU ASP ASP ARG VAL LEU ALA SER SEQRES 2 F 116 LEU GLN GLU VAL MET GLU ASP GLU TYR PRO VAL LEU LEU SEQRES 3 F 116 ASP THR PHE VAL LEU ASP SER GLU GLU ARG LEU ARG SER SEQRES 4 F 116 LEU HIS ALA ALA LEU GLN ALA GLY ASP ALA GLN ALA LEU SEQRES 5 F 116 ARG HIS THR ALA HIS SER PHE LYS GLY GLY SER SER ASN SEQRES 6 F 116 MET GLY ALA VAL LEU LEU ALA GLY TYR CYS LYS GLU LEU SEQRES 7 F 116 GLU GLU SER ALA ARG ARG GLY GLU LEU GLN ARG ALA PRO SEQRES 8 F 116 ALA LEU ILE GLU GLN MET GLU ARG GLU PHE ALA ILE VAL SEQRES 9 F 116 ARG ILE LEU PHE LYS GLN GLU ARG GLN ARG TYR ARG FORMUL 7 HOH *1229(H2 O) HELIX 1 AA1 ASP A 7 GLU A 19 1 13 HELIX 2 AA2 GLU A 21 ALA A 46 1 26 HELIX 3 AA3 ASP A 48 MET A 66 1 19 HELIX 4 AA4 ALA A 68 ARG A 84 1 17 HELIX 5 AA5 ARG A 89 GLN A 113 1 25 HELIX 6 AA6 ASP B 7 GLU B 19 1 13 HELIX 7 AA7 GLU B 21 GLY B 47 1 27 HELIX 8 AA8 ASP B 48 MET B 66 1 19 HELIX 9 AA9 ALA B 68 ARG B 84 1 17 HELIX 10 AB1 GLU B 86 GLN B 88 5 3 HELIX 11 AB2 ARG B 89 GLN B 113 1 25 HELIX 12 AB3 ASP C 7 GLU C 19 1 13 HELIX 13 AB4 GLU C 21 GLY C 47 1 27 HELIX 14 AB5 ASP C 48 MET C 66 1 19 HELIX 15 AB6 ALA C 68 GLY C 85 1 18 HELIX 16 AB7 ARG C 89 GLN C 113 1 25 HELIX 17 AB8 ASP D 7 GLU D 19 1 13 HELIX 18 AB9 GLU D 21 GLY D 47 1 27 HELIX 19 AC1 ASP D 48 MET D 66 1 19 HELIX 20 AC2 ALA D 68 ARG D 84 1 17 HELIX 21 AC3 GLU D 86 GLN D 88 5 3 HELIX 22 AC4 ARG D 89 GLN D 113 1 25 HELIX 23 AC5 ASP E 7 GLU E 19 1 13 HELIX 24 AC6 GLU E 21 GLY E 47 1 27 HELIX 25 AC7 ASP E 48 MET E 66 1 19 HELIX 26 AC8 ALA E 68 ARG E 84 1 17 HELIX 27 AC9 GLU E 86 GLN E 88 5 3 HELIX 28 AD1 ARG E 89 GLN E 113 1 25 HELIX 29 AD2 ASP F 7 GLU F 19 1 13 HELIX 30 AD3 ASP F 20 GLY F 47 1 28 HELIX 31 AD4 ASP F 48 MET F 66 1 19 HELIX 32 AD5 ALA F 68 ARG F 84 1 17 HELIX 33 AD6 GLU F 86 GLN F 88 5 3 HELIX 34 AD7 ARG F 89 GLN F 113 1 25 CISPEP 1 ALA A 3 PRO A 4 0 1.37 CISPEP 2 ALA B 3 PRO B 4 0 -1.64 CISPEP 3 ALA C 3 PRO C 4 0 -0.16 CISPEP 4 ALA D 3 PRO D 4 0 -1.78 CISPEP 5 ALA D 3 PRO D 4 0 -1.78 CISPEP 6 ALA E 3 PRO E 4 0 6.17 CISPEP 7 ALA F 3 PRO F 4 0 3.51 CRYST1 119.172 119.172 171.950 90.00 90.00 90.00 P 43 21 2 48 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008391 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008391 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005816 0.00000